BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342316
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21660.1 | Symbols: | UBX domain-containing protein | chr3:... 555 6e-157
> AT3G21660.1 | Symbols: | UBX domain-containing protein | chr3:7624495-7626654
REVERSE LENGTH=1308
Length=1308
Score = 555 bits (300), Expect = 6e-157
Identities = 415/467 (89%), Gaps = 22/467 (5%)
Strand=Plus/Plus
Query 360 AAAACGTGCAGCAGCTAATCCATTTTCGAGGCATACGATTAAACGCCGTCAAGGCGATGG 419
||||||||||||||||||||||||||| |||| | || ||||||||||||||||| |||
Sbjct 225 AAAACGTGCAGCAGCTAATCCATTTTCTAGGC--A-GAATAAACGCCGTCAAGGCGCTGG 281
Query 420 AAATGTCCGTATCGATGATTTCTCCGGTGGAACTGGTAGCGATTCCGATGAAGCTCTGGA 479
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 282 GAATGTCCGTATCGATGATTTCTCCGGCGGAACTGGAAGCGATTCCGATGAAGCGGTGGA 341
Query 480 GAATTACGGCGGAGAAGATAATAGAGCTATAGAAAGAACTGAGC-A--ATC---ATC--T 531
| | |||||||||||||| |||||||||||||||||| |||||| | ||| ||| |
Sbjct 342 GCACTACGGCGGAGAAGAGAATAGAGCTATAGAAAGACCTGAGCAATCATCAAGATCAAT 401
Query 532 G---G-AGAAACTGATTCACCTGAGCTTGAAGAAGAGCTTGAAGGAGTCTTTACGTACAC 587
| | |||||||| |||| |||||||||||||||||| | || ||| |||||| ||||
Sbjct 402 GTCTGAAGAAACTGTTTCATCTGAGCTTGAAGAAGAGCCTCAAAAAGTGTTTACGCACAC 461
Query 588 TGTAACAAGCTGGAGCAACGGTTTCACTGTCGATGATAGTTCGTTAAAGACGTTGGATGA 647
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 462 TGTAACAAGCTGGAGCAACGGTTTCACTGTCGATGATAGCTCGTTAAAGACGTTGGATGA 521
Query 648 TCCGGAAAATGCATAT-TTTCTGGAGATCATATCGAAG-ATGGAGTCCCCGCGTGAACTC 705
|||||||||||| | ||||| ||||||||||| ||| ||||||||||| |||||||||
Sbjct 522 CCCGGAAAATGCA-ACCTTTCTTGAGATCATATC-AAGTATGGAGTCCCCACGTGAACTC 579
Query 706 GCTCAAGTCCGTGTTCAAGTCAAAATCATTAGGCGTGAAGAAGAAAACTTCACTGAAGCA 765
| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||
Sbjct 580 GGTCAAGTCCGTGTTCAAGTCAAAATCATTAGCCGTGAAGAAGAAAACTACACTGAATCA 639
Query 766 CAAGCCGGATCAGACTCTGCCTCAACTGAGCCACCA---GCTTTAGC 809
||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 640 CAAGCCGGATCAGACTCTGCCTCAACTAAGCCACCACCAGCTTTAGC 686
Score = 394 bits (213), Expect = 1e-108
Identities = 262/284 (92%), Gaps = 10/284 (4%)
Strand=Plus/Plus
Query 877 AGAGCTAAGGAGTCAGCTATAGAAAGATTTGAGCAATCATCAAAGGTAATGTCTGGAGAA 936
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 691 AGAGCTAAGGAGTCAGCTATAGAAAGATCTGAGCAATCATCAAAGGTATTGTCTGGAGAA 750
Query 937 ACTGATTCAGCTGAGCTTCAAGAACAACAGCAAGAAGACCAGCCATATAAAGTAGTCACG 996
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 751 ACTGATTCAGCTGAGCTTCAAGAACAACAGCAAGAAGACCAGCCATATGAAGTAGTCACG 810
Query 997 TCCACTGTAACTATTTGGAGGAATGGTTTTACTATCGATGATGATCCGTTTAAGAGTTTG 1056
| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 811 TACACTGTAACTATTTGGAGGAACGGTTTCACTGTCGATGATGATCCGTTTAAGAGTTTG 870
Query 1057 GATGACCCGGAAAATGCAGCCTTTCT----T----G--AGAGGATAACAAGTTTGGAGTC 1106
||||| || ||||||||||| ||||| | | ||||||||||||||||||||||
Sbjct 871 GATGATCCAGAAAATGCAGCTTTTCTCGAGTATATGCCAGAGGATAACAAGTTTGGAGTC 930
Query 1107 CCCACGACTACTTGATCCACTTAGTGTTCAAGTCAAACTCATCA 1150
|||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 931 CCCACGACTACTCGATCCACTTCGTGTTCAAGTCAAACTCATCA 974
Score = 387 bits (209), Expect = 2e-106
Identities = 291/330 (88%), Gaps = 7/330 (2%)
Strand=Plus/Plus
Query 1200 AACTCTAGCCGAATCAGACTCTGTCTCTACCGAGCTACCAACTTTAGCCACCT-CACCGC 1258
||||||||||| |||||| ||| |||||| |||| ||| | || | | | || ||| |
Sbjct 984 AACTCTAGCCGGATCAGAGTCTACCTCTACTGAGCCACC-A-TTGA-CGA-CTACACAAC 1039
Query 1259 CACCATCAATGGGCTTAATAGTGGTAGATCCTACAGCGCCAACAACCTCGATTCAGCTCA 1318
||||||| ||| ||| | ||||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 1040 CACCATCCATGAGCTCATTAGTGGTGGATCCTGCAGCGCCAACAACCTCGATCCAGCTTA 1099
Query 1319 GATTAGCAGACGGCACACGCCTAGTCACCC-GTTTCAACACTCACCACACCATTAGAGAC 1377
|||||||||| |||||||| | ||||||| | ||||| |||||||||||||||||||||
Sbjct 1100 TATTAGCAGACAGCACACGCATTGTCACCCAG-TTCAATACTCACCACACCATTAGAGAC 1158
Query 1378 ATTCGAGGCTTCATAGACGCGTCTAGACCAGACGGCTCCAAAGACTACGAATTACTCATC 1437
|||||| ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1159 ATTCGATGCTTCATAGACACGTCTAGACCAGATGGCTCCAAAGACTACCAATTACTCATC 1218
Query 1438 ATGGGGTCTCCTCCTACACGACTGCCTGACTTTGACCAAACCATAGAGAAAGCTGGCATC 1497
||||||||||||||||||| |||| | ||||||||||||||||| ||||| |||||||||
Sbjct 1219 ATGGGGTCTCCTCCTACACCACTGTCGGACTTTGACCAAACCATCGAGAAGGCTGGCATC 1278
Query 1498 GCCAACTCTGTCCTCGTCCAAAAATTCTAG 1527
||||||||||||||||||||||||||||||
Sbjct 1279 GCCAACTCTGTCCTCGTCCAAAAATTCTAG 1308
Score = 207 bits (112), Expect = 2e-52
Identities = 154/174 (89%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 152 CCGTCGCCGCCGAGCCAAATGTTCCAAACCCTAAAGACGAACAACTTCTCCGACGTAATA 211
||| ||||||| |||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 53 CCGACGCCGCCAAGCCAAATGTTCCAAACCCTAACGACG---AACTTCTCCGGCGTAATC 109
Query 212 GAAGTCCGTTTCCGAATCTTCGAGTCCGTATCCCTAATTCATCTTTTTCTGCGTTTGATG 271
|||| ||||||| ||||| ||| || ||||||| ||||||||||||| |||||||||
Sbjct 110 CAAGTTCGTTTCCAAATCTACGAATCAAAATCCCTACTTCATCTTTTTCTACGTTTGATG 169
Query 272 GCTCTTCCGGTTACTCTCCGTCGCGGTTACAGTTACGACCACCGTTTCCGTCGT 325
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 170 GCTCTTCCGGTTACTCTCCGTCGCGGTTACAGTTACGACCACCGTGGCCGTCGT 223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5