BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342373

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily pro...   558    1e-158


> AT2G43360.1 | Symbols: BIO2, BIOB | Radical SAM superfamily protein 
| chr2:18010751-18013238 REVERSE LENGTH=1413
Length=1413

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 337/354 (95%), Gaps = 2/354 (1%)
 Strand=Plus/Plus

Query  1    ATGGGGATGGAAGTTTGCTGCACCTTGGGCATGATTGAGAAACAACAAGCACTAGAGCTA  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  605  ATGGGGATGGAAGTTTGCTGCACCTTAGGCATGATTGAGAAACAACAAGCACTAGAGCTA  664

Query  61   AAGAAAGCTGGACTCACTGCCTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCA  120
            ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  665  AAGAAGGCTGGCCTCACTGCTTATAACCACAATCTTGATACTTCAAGAGAGTACTACCCA  724

Query  121  AACGTCATCACTACTAGAAGTTATGACGAACGCCTTGAAACTCTTGAGC-ATGTTCGTGA  179
            ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct  725  AACGTCATCACTACTAGAAGTTATGACGATCGCCTTGAAACTCTT-AGCCATGTTCGTGA  783

Query  180  AGCTGGAATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGAGAGGCTGAGGAAGACAG  239
             ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  784  TGCTGGAATCAACGTTTGTTCAGGAGGAATCATAGGGCTTGGTGAGGCAGAGGAAGACAG  843

Query  240  AGTAGGTTTACTACACACACTAGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAA  299
            | |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct  844  AATAGGTTTATTACACACGCTGGCAACACTTCCTTCTCACCCTGAGAGTGTTCCCATTAA  903

Query  300  TGCTCTACTTGCAGTGAAAGGCACTTCTCTCGAAGACCAGAAGCCGGTTGAGAT  353
            ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct  904  TGCTCTACTTGCAGTGAAAGGCACTCCTCTTGAAGACCAGAAGCCAGTTGAGAT  957



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5