BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342380
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:79... 1520 0.0
AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10... 1134 0.0
> AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:7904156-7905384
FORWARD LENGTH=978
Length=978
Score = 1520 bits (823), Expect = 0.0
Identities = 928/979 (95%), Gaps = 5/979 (1%)
Strand=Plus/Plus
Query 1 ATGATGATGA---GTCGCTGTGGAGCCAAGGC-AATGGCAACTGCTGTGTCTCACAGCCA 56
|||||||||| |||||| ||||||||| || ||||| |||||||||| ||||||||||
Sbjct 1 ATGATGATGAGTCGTCGCTATGGAGCCAA-GCTAATGGAAACTGCTGTGACTCACAGCCA 59
Query 57 TCTTTTGAACCCTAGGGTTCCTCTCGTGGCGGAAAATGTTAGGGTTCCGATGATGGGAGT 116
||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 60 TCTTTTGAATCCTAGGGTTCCTCTCGTGACGGAAAATATTAGGGTTCCGGCGATGGGAGT 119
Query 117 CGTGAGAGATTTCAGCAAGATGACATTTGAGAAGAAGAAAACGACGGAGGAGAAAGAATC 176
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 120 CGTGAGAGTTTTCAGCAAGATGACATTTGAGAAGAAGAAAACTACGGAGGAGAAAGGATC 179
Query 177 TAACGGTGGCAAGGCTGATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGTTATTGGGG 236
|| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 180 TAGCGGTGGCAAGGCTGATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGCTACTGGGG 239
Query 237 TGTGAAGCCGATGAAGATCACCAAAGAAGATGGCACTGAATGGAAATGGAGTTGCTTCCG 296
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 240 AGTGAAGCCGATGAAGATCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTAG 299
Query 297 GCCATGGGAGACTTATAAATCAGATTTGACGATAGATTTGAAGAAGCATCATGTTCCATC 356
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 300 GCCATGGGAGACATATAAATCAGATCTGACTATAGATTTGAAGAAGCATCATGTTCCATC 359
Query 357 GACATTATCGGACAAATTAGCTTATTGGACCGTTAAATCTCTTCGATGGCCTACCGATGT 416
||| ||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |
Sbjct 360 GACTTTACCGGACAAACTAGCTTATTGGACCGTGAAATCTCTTCGATGGCCTACCGATCT 419
Query 417 TTTCTTCCAGAGGCGGTACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTCTTCCAGAGGCGGTACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCC 479
Query 477 AGGAATGGTTGGAGGGATGTTAGTCCACTGCAAATCGCTTAGGCGTTTTGAACAAAGCGG 536
|||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||
Sbjct 480 AGGAATGGTTGGAGGGATGTTAGTACACTGCAAATCGCTTCGACGGTTTGAACAAAGCGG 539
Query 537 TGGTTGGATCAAAGCCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGTTGGATCAAAGCCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATT 599
Query 597 CATGGAAGTCGCGAAACCCAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCGt 656
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 CATGGAAGTCGCGAAACCTAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCAT 659
Query 657 ttttttCAACGCTTATTTCCTCGGATACCTAATCTCTCCCAAATTTGCTCATCGTATGGT 716
||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TTTCTTCAATGCTTATTTCCTTGGATACCTAATTTCTCCCAAATTTGCTCATCGTATGGT 719
Query 717 TGGATACCTTGAGGAAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGATACCTTGAGGAAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAA 779
Query 777 CGGTAACATCGAAAACGTTCCTGCACCGGCTATTGCCATTGATTACTGGAGGCTTGAAGC 836
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TGGTAACATCGAAAATGTGCCTGCACCGGCTATTGCCATTGATTACTGGAGACTTGAAGC 839
Query 837 AGATGCGACGCTTCGTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGA 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGATGCGACGCTTCGTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGA 899
Query 897 CGTTAACCATTATGCATCCGATATTCACTACCAAGGTCGTGAGCTGAAAGAAGCTCCAGC 956
|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 900 TGTTAACCACTATGCATCCGATATTCATTACCAAGGTCGTGAGCTAAAAGAAGCTCCAGC 959
Query 957 TCCCATCGGATATCATTGA 975
|||||| ||||||||||||
Sbjct 960 TCCCATTGGATATCATTGA 978
> AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10229045-10230702
REVERSE LENGTH=1341
Length=1341
Score = 1134 bits (614), Expect = 0.0
Identities = 811/904 (90%), Gaps = 22/904 (2%)
Strand=Plus/Plus
Query 88 GAAA-ATGTTAGGGTTCC-G-ATGATGGGA-GTCGTGAGAGATTTCAGCAAGATGACATT 143
|||| || |||||||||| | | | ||||| ||| |||||||||||||||||||||||||
Sbjct 200 GAAATATTTTAGGGTTCCGGCA-G-TGGGAGGTC-TGAGAGATTTCAGCAAGATGACATT 256
Query 144 TGAGAAGAAGAAAACGA-CGG-AG--GAGAAAGAAT-C--TAACGGTGGCAAGG---CTG 193
||| ||||||||||| | ||| || ||| ||| || | | |||| | ||||| ||
Sbjct 257 TGAAAAGAAGAAAAC-ATCGGAAGAAGAGGAAGGATCCGGTGACGGCGTCAAGGTTAATG 315
Query 194 ATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGTTATTGGGGTGTGAAGCCGATGAAGA 253
||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| |
Sbjct 316 ATCAAGGTAACAAAGGGGAACAATTAATAGTTAGTTATTGGGGCGTGAAGCCAATGAAAA 375
Query 254 TCACCAAAGAAGATGGCACTGAATGGAAATGGAGTTGCTTCCGGCCATGGGAGACTTATA 313
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 376 TCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTCGGCCATGGGAGACTTATA 435
Query 314 AATCAGATTTGACGATAGATTTGAAGAAGCATCATGTTCCATCGACATTATCGGACAAAT 373
|| | ||| | ||||||||||||||||||||||||||||| || || ||| ||||||||
Sbjct 436 AAGCTGATCTAACGATAGATTTGAAGAAGCATCATGTTCCTTCAACTTTACCGGACAAAA 495
Query 374 TAGCTTATTGGACCGTTAAATCTCTTCGATGGCCTACCGATGTTTTCTTCCAGAGGCGGT 433
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 496 TAGCTTATTGGATGGTTAAATCTCTTCGATGGCCTACCGATCTTTTCTTCCAGAGGAGGT 555
Query 434 ACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGA 493
| || ||| |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 556 ATGGTTGCCGAGCGATTATGCTAGAGACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGA 615
Query 494 TG-TTAGTCCACTGCAAATCGCTTAGGCGTTTTGAACAAAGCGGTGGTTGGATCAAAGCC 552
|| ||| | |||| |||||| || |||||||| |||||||| || |||||||||||||||
Sbjct 616 TGCTTA-TGCACTTCAAATCTCTCAGGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCC 674
Query 553 CTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATTCATGGAAGTCGCGAAA 612
|| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 675 CTTCTCGAAGAAGCAGAGAATGAGAGAATGCACTTAATGACATTCATGGAAGTAGCGAAA 734
Query 613 CCCAATTGGTACGAACGAGCTCTTGTGAT-TGCCGTTCAAGGCGtttttttCAACGCTTA 671
||||| ||||||||||||||||||||||| | | |||||||| ||||| |||||||||||
Sbjct 735 CCCAAATGGTACGAACGAGCTCTTGTGATCT-CTGTTCAAGGGGTTTTCTTCAACGCTTA 793
Query 672 TTTCCTCGGATACCTAATCTCTCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGGA 731
||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 794 TTTAATCGGATACATAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGATACCTTGAGGA 853
Query 732 AGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAACGGTAACATCGAAAA 791
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 854 AGAAGCAATACATTCTTACACTGAGTTTCTCAAAGAACTCGATAACGGTAACATCGAAAA 913
Query 792 CGTTCCTGCACCGGCTATTGCCATTGATTACTGGAGGCTTGAAGCAGATGCGACGCTTCG 851
||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||
Sbjct 914 TGTTCCTGCACCGGCTATCGCTGTTGATTACTGGAGGCTTGAAGCTGATGCAACGCTTCG 973
Query 852 TGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGACGTTAACCATTATGC 911
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 974 TGATGTTGTCATGGTGGTTCGTGCTGATGAGGCGCATCACCGTGACGTTAACCACTATGC 1033
Query 912 ATCCGATATTCACTACCAAGGTCGTGAGCTGAAAGAAGCTCCAGCTCCCATCGGATATCA 971
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 1034 ATCCGATATTCACTACCAAGGTCATGAGCTGAAAGAAGCTCCAGCTCCTATAGGATATCA 1093
Query 972 TTGA 975
|||
Sbjct 1094 CTGA 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5