BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342380 Length=975 Score E Sequences producing significant alignments: (Bits) Value AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:79... 1520 0.0 AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10... 1134 0.0 > AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:7904156-7905384 FORWARD LENGTH=978 Length=978 Score = 1520 bits (823), Expect = 0.0 Identities = 928/979 (95%), Gaps = 5/979 (1%) Strand=Plus/Plus Query 1 ATGATGATGA---GTCGCTGTGGAGCCAAGGC-AATGGCAACTGCTGTGTCTCACAGCCA 56 |||||||||| |||||| ||||||||| || ||||| |||||||||| |||||||||| Sbjct 1 ATGATGATGAGTCGTCGCTATGGAGCCAA-GCTAATGGAAACTGCTGTGACTCACAGCCA 59 Query 57 TCTTTTGAACCCTAGGGTTCCTCTCGTGGCGGAAAATGTTAGGGTTCCGATGATGGGAGT 116 ||||||||| |||||||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 60 TCTTTTGAATCCTAGGGTTCCTCTCGTGACGGAAAATATTAGGGTTCCGGCGATGGGAGT 119 Query 117 CGTGAGAGATTTCAGCAAGATGACATTTGAGAAGAAGAAAACGACGGAGGAGAAAGAATC 176 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 120 CGTGAGAGTTTTCAGCAAGATGACATTTGAGAAGAAGAAAACTACGGAGGAGAAAGGATC 179 Query 177 TAACGGTGGCAAGGCTGATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGTTATTGGGG 236 || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 180 TAGCGGTGGCAAGGCTGATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGCTACTGGGG 239 Query 237 TGTGAAGCCGATGAAGATCACCAAAGAAGATGGCACTGAATGGAAATGGAGTTGCTTCCG 296 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 240 AGTGAAGCCGATGAAGATCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTAG 299 Query 297 GCCATGGGAGACTTATAAATCAGATTTGACGATAGATTTGAAGAAGCATCATGTTCCATC 356 |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 300 GCCATGGGAGACATATAAATCAGATCTGACTATAGATTTGAAGAAGCATCATGTTCCATC 359 Query 357 GACATTATCGGACAAATTAGCTTATTGGACCGTTAAATCTCTTCGATGGCCTACCGATGT 416 ||| ||| |||||||| |||||||||||||||| |||||||||||||||||||||||| | Sbjct 360 GACTTTACCGGACAAACTAGCTTATTGGACCGTGAAATCTCTTCGATGGCCTACCGATCT 419 Query 417 TTTCTTCCAGAGGCGGTACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCC 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TTTCTTCCAGAGGCGGTACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCC 479 Query 477 AGGAATGGTTGGAGGGATGTTAGTCCACTGCAAATCGCTTAGGCGTTTTGAACAAAGCGG 536 |||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||| Sbjct 480 AGGAATGGTTGGAGGGATGTTAGTACACTGCAAATCGCTTCGACGGTTTGAACAAAGCGG 539 Query 537 TGGTTGGATCAAAGCCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATT 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGGTTGGATCAAAGCCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATT 599 Query 597 CATGGAAGTCGCGAAACCCAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCGt 656 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 600 CATGGAAGTCGCGAAACCTAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCAT 659 Query 657 ttttttCAACGCTTATTTCCTCGGATACCTAATCTCTCCCAAATTTGCTCATCGTATGGT 716 ||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 660 TTTCTTCAATGCTTATTTCCTTGGATACCTAATTTCTCCCAAATTTGCTCATCGTATGGT 719 Query 717 TGGATACCTTGAGGAAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAA 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGGATACCTTGAGGAAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAA 779 Query 777 CGGTAACATCGAAAACGTTCCTGCACCGGCTATTGCCATTGATTACTGGAGGCTTGAAGC 836 |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| Sbjct 780 TGGTAACATCGAAAATGTGCCTGCACCGGCTATTGCCATTGATTACTGGAGACTTGAAGC 839 Query 837 AGATGCGACGCTTCGTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGA 896 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGATGCGACGCTTCGTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGA 899 Query 897 CGTTAACCATTATGCATCCGATATTCACTACCAAGGTCGTGAGCTGAAAGAAGCTCCAGC 956 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 900 TGTTAACCACTATGCATCCGATATTCATTACCAAGGTCGTGAGCTAAAAGAAGCTCCAGC 959 Query 957 TCCCATCGGATATCATTGA 975 |||||| |||||||||||| Sbjct 960 TCCCATTGGATATCATTGA 978 > AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10229045-10230702 REVERSE LENGTH=1341 Length=1341 Score = 1134 bits (614), Expect = 0.0 Identities = 811/904 (90%), Gaps = 22/904 (2%) Strand=Plus/Plus Query 88 GAAA-ATGTTAGGGTTCC-G-ATGATGGGA-GTCGTGAGAGATTTCAGCAAGATGACATT 143 |||| || |||||||||| | | | ||||| ||| ||||||||||||||||||||||||| Sbjct 200 GAAATATTTTAGGGTTCCGGCA-G-TGGGAGGTC-TGAGAGATTTCAGCAAGATGACATT 256 Query 144 TGAGAAGAAGAAAACGA-CGG-AG--GAGAAAGAAT-C--TAACGGTGGCAAGG---CTG 193 ||| ||||||||||| | ||| || ||| ||| || | | |||| | ||||| || Sbjct 257 TGAAAAGAAGAAAAC-ATCGGAAGAAGAGGAAGGATCCGGTGACGGCGTCAAGGTTAATG 315 Query 194 ATCAAGGTAACAAAGGGGAGCAATTAATCGTTAGTTATTGGGGTGTGAAGCCGATGAAGA 253 ||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||| | Sbjct 316 ATCAAGGTAACAAAGGGGAACAATTAATAGTTAGTTATTGGGGCGTGAAGCCAATGAAAA 375 Query 254 TCACCAAAGAAGATGGCACTGAATGGAAATGGAGTTGCTTCCGGCCATGGGAGACTTATA 313 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 376 TCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTCGGCCATGGGAGACTTATA 435 Query 314 AATCAGATTTGACGATAGATTTGAAGAAGCATCATGTTCCATCGACATTATCGGACAAAT 373 || | ||| | ||||||||||||||||||||||||||||| || || ||| |||||||| Sbjct 436 AAGCTGATCTAACGATAGATTTGAAGAAGCATCATGTTCCTTCAACTTTACCGGACAAAA 495 Query 374 TAGCTTATTGGACCGTTAAATCTCTTCGATGGCCTACCGATGTTTTCTTCCAGAGGCGGT 433 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 496 TAGCTTATTGGATGGTTAAATCTCTTCGATGGCCTACCGATCTTTTCTTCCAGAGGAGGT 555 Query 434 ACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGA 493 | || ||| |||| || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 556 ATGGTTGCCGAGCGATTATGCTAGAGACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGA 615 Query 494 TG-TTAGTCCACTGCAAATCGCTTAGGCGTTTTGAACAAAGCGGTGGTTGGATCAAAGCC 552 || ||| | |||| |||||| || |||||||| |||||||| || ||||||||||||||| Sbjct 616 TGCTTA-TGCACTTCAAATCTCTCAGGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCC 674 Query 553 CTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATTCATGGAAGTCGCGAAA 612 || || |||||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 675 CTTCTCGAAGAAGCAGAGAATGAGAGAATGCACTTAATGACATTCATGGAAGTAGCGAAA 734 Query 613 CCCAATTGGTACGAACGAGCTCTTGTGAT-TGCCGTTCAAGGCGtttttttCAACGCTTA 671 ||||| ||||||||||||||||||||||| | | |||||||| ||||| ||||||||||| Sbjct 735 CCCAAATGGTACGAACGAGCTCTTGTGATCT-CTGTTCAAGGGGTTTTCTTCAACGCTTA 793 Query 672 TTTCCTCGGATACCTAATCTCTCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGGA 731 ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 794 TTTAATCGGATACATAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGATACCTTGAGGA 853 Query 732 AGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAACGGTAACATCGAAAA 791 ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 854 AGAAGCAATACATTCTTACACTGAGTTTCTCAAAGAACTCGATAACGGTAACATCGAAAA 913 Query 792 CGTTCCTGCACCGGCTATTGCCATTGATTACTGGAGGCTTGAAGCAGATGCGACGCTTCG 851 ||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||| Sbjct 914 TGTTCCTGCACCGGCTATCGCTGTTGATTACTGGAGGCTTGAAGCTGATGCAACGCTTCG 973 Query 852 TGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGACGTTAACCATTATGC 911 |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 974 TGATGTTGTCATGGTGGTTCGTGCTGATGAGGCGCATCACCGTGACGTTAACCACTATGC 1033 Query 912 ATCCGATATTCACTACCAAGGTCGTGAGCTGAAAGAAGCTCCAGCTCCCATCGGATATCA 971 ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| Sbjct 1034 ATCCGATATTCACTACCAAGGTCATGAGCTGAAAGAAGCTCCAGCTCCTATAGGATATCA 1093 Query 972 TTGA 975 ||| Sbjct 1094 CTGA 1097 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47722439650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5