BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342406
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22640.1 | Symbols: PAP85 | cupin family protein | chr3:8011... 2069 0.0
> AT3G22640.1 | Symbols: PAP85 | cupin family protein | chr3:8011724-8013902
REVERSE LENGTH=1658
Length=1658
Score = 2069 bits (1120), Expect = 0.0
Identities = 1353/1467 (92%), Gaps = 9/1467 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATAACCAACAAATTAATCATAACACTTCTCCTCCTTATCTCCATAGCTTTCGTC 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 20 ATGGCAATAACCAACAAATTAATCATAACACTTCTTCTCCTTATCTCCATAGCTGTCGTC 79
Query 61 CACTGCTTGGCCTTCCATGTGGATATCGAAAAGTTCGAGCCACCGCAGCAAGAAGAACAA 120
|||||||| |||||| |||||| ||||| ||||||||||||| ||||||| |||||||
Sbjct 80 CACTGCTTATCCTTCCGTGTGGAGATCGACGAGTTCGAGCCACCACAGCAAGGAGAACAA 139
Query 121 GAAGGTCCCGGCCGCCGTCCTGGCGGTGGCTCCGGTGAGGGATGGGAGGAAGAGTCGACG 180
||||||||| | ||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 140 GAAGGTCCCCGTCGCCGTCCTGGTGGTGGCTCTGGCGAGGGATGGGAGGAAGAGTCGACG 199
Query 181 AATCACCCGTACCACTTCAGGAAGCGGAGTTTCAAG-AACTGGTTCCAGTCAAAGGAAGG 239
||||| || |||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 200 AATCATCCATACCACTTCAGGAAGCGGAGTTTC-AGTGATTGGTTCCAGTCAAAGGAAGG 258
Query 240 TTTTGTGAAATTGTTGCCCAAGTTCACAAAACGTGCACCAGCTCTCTTCCGCGGAATTGA 299
|||||||| | || |||| ||||||||||||| |||||| ||||||||||| ||||| ||
Sbjct 259 TTTTGTGAGAGTGCTGCCTAAGTTCACAAAACATGCACCGGCTCTCTTCCGAGGAATCGA 318
Query 300 GAACTACAGATTCTCATTGGTGGAGATGGAGCCAACAACTTTCTTTGTGCCTCACCATTG 359
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GAACTACAGATTCTCGTTGGTGGAGATGGAGCCAACAACTTTCTTTGTGCCTCACCATTT 378
Query 360 GGATGCTGATTCCGTGGTTATAGTCCTACAAGGTAAAGGAGTGATCGAGTTTGTGACGGA 419
|||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GGATGCCGATGCTGTTTTTATAGTCCTACAAGGTAAAGGAGTGATCGAGTTTGTGACGGA 438
Query 420 TAACACAAAGGAAGCCTTTCATATAAAC-AAAGGTGATGTGGTGAGAGTCCCTTCCGGCG 478
||| ||||| ||| | || || || ||| |||||||||||||| ||| ||||||| || |
Sbjct 439 TAAAACAAAAGAATCGTTCCACAT-AACTAAAGGTGATGTGGTAAGAATCCCTTCTGGTG 497
Query 479 TCACCCACTTCCTCACCAACACTAACCAAACCGTTCCTCTCCGCCTCGCCAAGTTCATAG 538
||||| |||| |||||||||||||||| || |||||||||||||||||| || ||| |
Sbjct 498 TCACCAACTTTATCACCAACACTAACCAGACGGTTCCTCTCCGCCTCGCCCAGATCACCG 557
Query 539 TCCCCGTCAACAATCCTGGCCAGTTTAAGGATTACTTCCCTTCTCCATCGCAATTTCAGC 598
|||| ||||||||||| ||| | | ||||||||||||||| || |||| ||||||||||
Sbjct 558 TCCCTGTCAACAATCCCGGCAACTACAAGGATTACTTCCCTGCTGCATCCCAATTTCAGC 617
Query 599 AATCCTACTTCAGTGGGTTAAGCAAAGAAGTCCTCTCTACCAGTTTCAACGTACCGGAAG 658
|||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 618 AATCCTACTTCAATGGGTTTACCAAAGAAGTCCTCTCTACCAGTTTCAACGTGCCGGAAG 677
Query 659 AATTGCTAGAGAGATTGGTTACAAGATCGAAAGAAAGGGGTCAAGGGATTATCCGAAGAA 718
||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 678 AATTGCTAGGGAGATTGGTTACGAGATCAAAAGAAATTGGTCAAGGGATTATCCGAAGAA 737
Query 719 TTTCTCCAGACCAAATCAAGGAACTTGCCGAACACGCTACATCTCCTTCAAACAAACACA 778
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 738 TTTCTCCAGACCAAATCAAGGAACTTGCTGAGCACGCTACATCTCCTTCAAACAAACACA 797
Query 779 AAGCTAAAAAAGAAAAGGAGGAAGACAAAGACTTGAGGACGATGTGGACTCCTTTCAATC 838
|||| ||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct 798 AAGCCAAAAAAGAAAAGGAGGAAGACAAAGACCTAAGAACGTTGTGGACTCCTTTCAATC 857
Query 839 TCTTTGCAATAGATCCAATCTACTCCAACGACTTTGGTCATTTCCACGAGGCACATCCTA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TCTTTGCAATAGATCCAATCTACTCCAACGACTTTGGTCATTTCCACGAGGCACATCCTA 917
Query 899 AGAGTTTTGATCAACTCCAAGACCTTCACATAGCCACCGCTTGGGCTAGCATGAGACAGG 958
||| || | ||||||| |||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 918 AGAATTATAATCAACTGCAAGACCTTCACATAGCCGCCGCTTGGGCTAACATGACACAGG 977
Query 959 GATCCTTGTTCCTTCCTCATTTTAACTCTAAGACCACGTTTGTAACGTTTGTGGAGAATG 1018
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 978 GATCCTTGTTCCTTCCTCATTTTAACTCTAAGACCACATTTGTAACGTTTGTGGAGAATG 1037
Query 1019 GTTGTGCCCGCTTCGAGATGGCTACTCCTTATAAATCCCAA-GAAGAGCAACAACAATGG 1077
|||||||||||||||||||||||||||||||||||| |||| || | |||||||||||||
Sbjct 1038 GTTGTGCCCGCTTCGAGATGGCTACTCCTTATAAATTCCAAAGAGG-GCAACAACAATGG 1096
Query 1078 CCAGGACAAGGACAAGAACAAGAAGAAGAAGATCTAAGTGAAGATGTACACAAAGTTGTA 1137
|||||||||||||||||| |||||||||||| | |||||| | ||||||||||||||
Sbjct 1097 CCAGGACAAGGACAAGAA---GAAGAAGAAGATATGAGTGAAAACGTACACAAAGTTGTG 1153
Query 1138 TCACGAGTGTGTAAAGGCGAAGTTTTTATCGTTCCGGCAGGTCATCCATTCACTATACTC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TCACGAGTGTGTAAAGGCGAAGTTTTTATCGTTCCGGCAGGTCATCCATTCACTATACTC 1213
Query 1198 TCGCAAGATCAAGACTTTGTCGCGGTAGGGTTTGGTATTTATGCGACCAACAACAAACGA 1257
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1214 TCGCAAGATCAAGACTTTATCGCGGTAGGGTTTGGTATTTATGCGACCAACAGCAAAAGA 1273
Query 1258 ACGTTCCTTGCAGGGGAAGAGAATATGCTGAGCAACCTCAACCCCGCGGCGACTAGGGTA 1317
|||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 1274 ACGTTCCTTGCAGGGGAAGAGAATTTGCTGAGCAACCTCAACCCGGCGGCAACTAGGGTA 1333
Query 1318 ACCTTCGGTGTTGGAAGTAAATTGGCGGAGAAACTGTTCACGAGCCAAAACTATTCCTAC 1377
||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1334 ACCTTTGGTGTTGGAAGTAAAGTCGCGGAGAAACTGTTCACGAGCCAAAACTATTCCTAC 1393
Query 1378 TTTGCGCCTACGAGCCGTAGCCAACAACAAATTCCAGAGAAACACAAGCCATCGTTTCAA 1437
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 TTTGCACCTACGAGTCGTAGCCAACAACAAATTCCAGAGAAACACAAGCCATCGTTTCAA 1453
Query 1438 TCAATCTTAGACTTTGCCGGTTTTTGA 1464
||||||||||||||||| |||||||||
Sbjct 1454 TCAATCTTAGACTTTGCTGGTTTTTGA 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5