BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342434

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22920.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-...   739    0.0  


> AT3G22920.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-trans 
isomerase family protein | chr3:8122713-8123411 REVERSE 
LENGTH=699
Length=699

 Score =  739 bits (400),  Expect = 0.0
 Identities = 462/493 (94%), Gaps = 0/493 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTAACCCTAAAGTTTTCTTTGATTTGACTGTTGATGAAAAACCCGCTGGTCGGATC  60
            |||||||||||||||||||||||||||||||| || ||||  ||||||||||||||||||
Sbjct  1    ATGGCTAACCCTAAAGTTTTCTTTGATTTGACCGTGGATGGCAAACCCGCTGGTCGGATC  60

Query  61   GTGATAGAGCTCTTCGCCGACTTGACTCCGCGGACGGCAGAGAACTTCAGGGCTCTGTGT  120
            ||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||
Sbjct  61   GTGATAGAGCTCTTCGCTGACTTGACTCCACGGACGGCGGAGAACTTCAGGGGTCTGTGT  120

Query  121  ACCGGCGAGAGAGGCATCGGAAAGTGTGGTAAACCACTGCACTATAAAGGATCAATCTTC  180
            |||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||
Sbjct  121  ACCGGCGAGAGAGGCATCGGAAAGTGTGGTAAACCAATCCACTACAAAGGATCAACCTTC  180

Query  181  GACGATATTGTTCCCGATCTCATGTGGTGTGGAGGAGATATCATCTTCGAAAACGAATCA  240
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct  181  GACCATATTGTTCCCGATCTCATGTGGTGTGGAGGAGATATCATCTTCGAAAACGAACCC  240

Query  241  ATCCACGGCGAAGAATTAGAAGACGAGTACTTCATCCTGAACCACGAAGATGGTCCAGGT  300
            |||||| ||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||
Sbjct  241  ATCCACAGCGAAGAATTAGACGACGAGTACTTTATCTTGAACCACGAAGACGGTCCAGGT  300

Query  301  ATCATCTCCATGGCCGACTCCACCGGATCTCAGTTCCAAATCCACATGAAGGACTATGGC  360
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  301  ATCATCTCCATGGCCGACTCCAACGGATCTCAGTTCCAAATCCACATGAAGGACTATGGC  360

Query  361  GTGCAAGTGGACGGTGATCACGTTGTGTTTGGCAAAGTTGTTGAAGGATTGGATCTTATG  420
             |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  361  TTGCAAGTGGACGGTGATCACGTTGTGATCGGCAAAGTTGTTGAAGGATTGGATCTTATG  420

Query  421  AGGAGCATTGAGAAGGAGGTTATAAGTACAACAACGAGGACGCCTTCCAAGCCCGTGGTG  480
            |||| ||||||||||||||| |||| ||| ||||| ||||||||||| ||||| ||||||
Sbjct  421  AGGAACATTGAGAAGGAGGTCATAACTACGACAACAAGGACGCCTTCAAAGCCTGTGGTG  480

Query  481  ATCGCGGACTGCG  493
            |||||||||||||
Sbjct  481  ATCGCGGACTGCG  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5