BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342459
Length=3048
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and ... 1271 0.0
AT3G23140.1 | Symbols: URO | C2H2 and C2HC zinc fingers superfa... 608 9e-173
AT3G23145.1 | Symbols: | zinc ion binding;isoleucine-tRNA liga... 119 2e-25
> AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and
V) family protein | chr4:6397330-6404596 REVERSE LENGTH=3856
Length=3856
Score = 1271 bits (688), Expect = 0.0
Identities = 954/1077 (89%), Gaps = 40/1077 (4%)
Strand=Plus/Plus
Query 565 TTTGTTTATCTTAAGGTTCGTAACAACTACACTGGAAAAGTCTACGTTGTTGCTGAATCT 624
||||| ||| | |||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct 817 TTTGTCTATGTGAAGGTTCGTAACAAGAACACTGGAAAAGTGTACATTGTTGCTGAATCT 876
Query 625 CGATTGTCAT-CCCTTCCCATC-GATAAGCCTAAGGCC-------G-AA---A-CTGCTG 670
|| ||||| | | ||||||| | ||||||||||||||| | || | ||||||
Sbjct 877 CGGTTGTC-TGCTCTTCCCA-CTGATAAGCCTAAGGCCAAGTTAAGTAATGGACCTGCTG 934
Query 671 GTGATACCAAGAAAG-------T---G--AAAGGTGCTAAGCCTGAAAATGAAGAGGATT 718
||||||| ||||||| | | ||||||||||| ||||| | || || ||||
Sbjct 935 GTGATACTAAGAAAGCAAATCCTAAAGCTAAAGGTGCTAAACCTGAGAGTGCAGCTGATT 994
Query 719 CTTATCAAGTTTTGGAAAAATTTAATGGAGCTTCCTTGGTTGGGAAAAAGTATGAACCTT 778
||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||||
Sbjct 995 CTTATGAAGTTTTGGAGAAATTTAATGGAGCTTCCCTGGTTGGGAAGAAGTATGAACCTT 1054
Query 779 TGTTTGACTACTTTAACGATTTCTCAAGTGTGGCTTTTCGAGTAGTAGCCGATGATTATG 838
||||||| ||||||| ||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 1055 TGTTTGATTACTTTAGTGATTTCTCAAGTGAGGCCTTTCGAGTAGTAGCAGATGATTATG 1114
Query 839 TCACTAATGATAGTGGTACTGGTATTGTCCACTGTGCTCCTGCTTTTGGCGAAGATGACT 898
||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1115 TCACTGATGACAGTGGTACTGGTATTGTCCACTGTGCTCCTGCCTTTGGTGAAGATGATT 1174
Query 899 ATCGTGTTTGTC--TTGAAAATAAGATAATTAATAAGGGAGAGAATCTAGTTGTGGCTGT 956
|||||||||||| ||||| | || ||||| || ||||| |||||||||||||| |||||
Sbjct 1175 ATCGTGTTTGTCTTTTGAACA-AA-ATAATCAAAAAGGGGGAGAATCTAGTTGTTGCTGT 1232
Query 957 TGATGATGATGGGTTGTTTACTGAGAGAATTACCCACTTCAGTGGCCTTTACGTCAAAGA 1016
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1233 TGATGATGATGGGTTGTTTACTGAGAGAATTACCCACTTCAGTGGCCGTTATGTCAAAGA 1292
Query 1017 TGCAGACAAAGATATAATTAAAGCTGTGAAGGCCAAAGGCAGGCTTGTTAAGTCCGGGA- 1075
||||||||| ||||||||| |||| || |||||||| |||||||||||||| | ||||
Sbjct 1293 TGCAGACAAGGATATAATTGAAGCCGTTAAGGCCAAGGGCAGGCTTGTTAAAAC-GGGAA 1351
Query 1076 GCTTTACTCACTCATATCCATTCTGCTGGCGATCAGACACTCCTCTCATATATAGAGCAG 1135
|||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1352 GCTTTACTCACTCATACCCATTTTGCTGGCGATCAGACACCCCACTCATATATAGAGCAG 1411
Query 1136 TTCCGAGTTGGTTTGTACGTGTGGAGCAGTTGAAAGAAAAATTGTTAGAAAA-CAATGAA 1194
|||| ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 1412 TTCCAAGTTGGTTTGTGCGTGTGGAGCAGTTGAAAGAAAAGTTGTTA-AAAAGCAATGAA 1470
Query 1195 AAGAC-GAAATGGGTACCTAAATATGTGAAGGATAAACGTTTTCACAATTGGCTTGAAAA 1253
|||| ||| ||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1471 CAGACAGAA-TGGGTACCTGGTTATGTGAAGGATAAACGTTTTCACAATTGGCTCGAAAA 1529
Query 1254 TGCAAGGGATTGGGCAGTCAGCCGAAGTAGATTTTGGGGAACGCCTCTTCCGATATGGAT 1313
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1530 TGCAAGGGATTGGGCAATCAGCCGAAGTAGATTTTGGGGCACGCCTCTTCCGATATGGAT 1589
Query 1314 CAGCCATGATGGAGAAGAAGTTGTGGTCATGGATTCAGTTGAGAAGCTTGAAAAGCTTTC 1373
|| ||||||| || ||||||||| |||||||||| || ||||||||||||||||| ||
Sbjct 1590 AAGTGATGATGGGGAGGAAGTTGTGATCATGGATTCCGTAGAGAAGCTTGAAAAGCTCTC 1649
Query 1374 TGGTGTCAAGGTATTTGATCTGCATCGTCACCATATTGATCAAATTACAATCCCATCTAG 1433
|||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1650 TGGTGTTAAGGTCTTTGACCTGCATCGTCACCATATTGATCATATTACAATTCCATCTAG 1709
Query 1434 TCGCGGTCG-TGAGTTTGGTGTGCTCCGTCGTGTCGAAGATGTATTTGATTGTTGGTTTG 1492
||| || || |||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1710 TCGTGG-CGATGAGTTTGGTGTGCTCCGTCGTGTAGAAGATGTTTTTGATTGTTGGTTTG 1768
Query 1493 AGAGTGGGTCAATGCCTTATGCATATATCCATTATCCGTTTGAGAACAAGGAGCTATTTG 1552
||||||||||||||||||| || |||||||||||||||||||| ||||||||| ||||||
Sbjct 1769 AGAGTGGGTCAATGCCTTACGCGTATATCCATTATCCGTTTGAAAACAAGGAGTTATTTG 1828
Query 1553 AGAAGAACTTTCCTGGTGATTTTGTTGCTGAAGGGCTTGATCAAACTCGTGGATGGT 1609
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1829 AGAAGAACTTTCCTGGTGATTTTGTGGCTGAAGGTCTTGATCAGACTCGTGGATGGT 1885
Score = 1009 bits (546), Expect = 0.0
Identities = 967/1164 (83%), Gaps = 54/1164 (5%)
Strand=Plus/Plus
Query 1610 CCTTTCTTCCTAGTAATCTAGCAACTTTACAGTCATCAAACGTTCTCGATCAGTGGATTC 1669
||||| |||||| | |||| |||||| |||||||| ||||| |||| |||||||||||||
Sbjct 2213 CCTTTGTTCCTACTGATCTGGCAACTATACAGTCAGCAAACATTCTTGATCAGTGGATTC 2272
Query 1670 ACTCAGCTACGCAGACTCTTG-TCAAG-GATGTCCACGAAAAGATGGATGAATATCGTCT 1727
||||||||||||||| ||||| || | ||||| ||| ||||||||| ||||| ||
Sbjct 2273 ACTCAGCTACGCAGAGTCTTGTTC--GTTTTGTCCGCGAGGAGATGGATGCCTATCGGCT 2330
Query 1728 TGACACCGTGGTTCCTCTTCTCTTGGAGTTCCTTGACAATCTCACTAACATATATGTTAG 1787
| |||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 2331 TTACACTGTGGTTCCTCGTCTCTTGAAGTTCCTCGACAATCTCACTAACATATATGTCAG 2390
Query 1788 ATTCAACCGCAAGAGGTTAAAAGGCCGTACAGGAAAAGATGATTGTCACACTGCTCTTTC 1847
||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 2391 ATTCAACCGCAAGAGATTAAAAGGCCGTACGGGGGAAGATGATTGTCACACTGCTCTTTC 2450
Query 1848 AACTCTCTAT-AATGTTCTCCTTACTTCTTGCAAAGTGATGACTCCTTTTACACCCTTCT 1906
||||| | | ||||| |||||||||||||||||||||||| | || |||||||| ||||
Sbjct 2451 GACTCTAT-TCAATGTGCTCCTTACTTCTTGCAAAGTGATGGCCCCGTTTACACCTTTCT 2509
Query 1907 TCACTGAGACTTTATACCAGAATCTACGGAAAGTGTGTGAAGGTTCTGAGGAAAGCATTC 1966
||||||| ||||| ||||||||||| ||||||| |||| |||||||||||||||| |||
Sbjct 2510 TCACTGAAACTTTGTACCAGAATCTGCGGAAAGCGTGTAAAGGTTCTGAGGAAAGTGTTC 2569
Query 1967 ATTACTGTAGTTA-TCC-TCAAGAGGAA-GAAACGAGAGGGGAGAGGATTGAGAAAAGTG 2023
| ||||| || || ||| |||| |||| ||| || |||||||||||||||| |||||
Sbjct 2570 ACTACTGCAG-TATTCCACCAAG-GGAAGGAATGGA-AGGGGAGAGGATTGAGTTAAGTG 2626
Query 2024 TTACAAGTATGAAGAAAATTATTAAACTTGCTCGGAACATTCGTAATCGTAAGGGTGATA 2083
|||| || |||| |||||| ||| | ||||||||||||||||| | | | | | ||
Sbjct 2627 TTACGAGGATGATGAAAATCATTGATCTTGCTCGGAACATTCG---T-G--A--GCG-TA 2677
Query 2084 AGCTTCAAGAACAACTACCATTGAAAACTCCTCTAAAGGAAATGATTGTAGTCCA-CCCA 2142
| | | ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2678 A----C----A-AACTACCCTTGAAAACTCCTCTAAAGGAAATGATTGTAGTCCATCCC- 2727
Query 2143 GATGCAGAATTCTTGGATGACATAACTGGAAAACTAAAACAGTATGTCTTGGATGAACTC 2202
||||| || ||||| |||||||||||||| ||||| | ||||||||||||| |||||
Sbjct 2728 GATGCTGATTTCTTAAATGACATAACTGGAGTACTAAGAGAGTATGTCTTGGAAGAACTT 2787
Query 2203 AATGTAAGATCTCTTGTCCCATGCAACGATACTCTGAAGTATGTGTCACTAAAAGCAGTA 2262
|| || ||||| ||||| |||||||| |||||||||||||||| ||||||||||||| |
Sbjct 2788 AACGTGAGATCGCTTGTACCATGCAATGATACTCTGAAGTATGCATCACTAAAAGCAGAA 2847
Query 2263 CCAGATTACAGTGTGTTGGGAAAACGACTTGGAAAGTCTATGGGAATTGTTACACAAG-A 2321
||||||| |||||| |||||||| |||||||||||||| ||||| ||||| || ||| |
Sbjct 2848 CCAGATTTCAGTGTATTGGGAAAGCGACTTGGAAAGTCGATGGGGCTTGTTGCA-AAGGA 2906
Query 2322 AGTTAGAA-AAATGTCTCACCCAGATATCTTAAG-ATTTAAGGAGACTAAGGAAGTCACT 2379
||||| || |||||||||| |||||||||| | |||| ||||| || |||||| |||
Sbjct 2907 AGTTA-AAGAAATGTCTCAAAAAGATATCTTA-GCATTTGAGGAGGCTGGGGAAGTTACT 2964
Query 2380 ATTGCTAATCACTCGCTCAAGCTAACAGATATCAAGATTGTCAGGGATTTCAAACGTCCA 2439
|||||||| |||| ||| ||| |||||||||||||||||| |||| ||||||||| |||
Sbjct 2965 ATTGCTAACCACTTGCTAAAGGAAACAGATATCAAGATTGTTAGGGTTTTCAAACGCCCA 3024
Query 2440 GATGGTTTGAAAGATACA-GAGATTGATGCAGCTGTAGATGATGATGTTATGGTGATTTT 2498
|| | ||||||||| | | ||||||||| |||||| ||||| ||||||| |||||||| |
Sbjct 3025 GACGATTTGAAAGAGA-ATGAGATTGATTCAGCTGGAGATGGTGATGTTTTGGTGATTCT 3083
Query 2499 GGATCTACGAGAAGATGAATCTTTGAAA-AATGAAGGTGTTGCTCGTGAGATTGTCAATA 2557
||||||||||| |||||| |||||| || | |||| |||| ||||||||||| || |
Sbjct 3084 GGATCTACGAGCAGATGATTCTTTGGTTGAA-GCAGGTTTTGCCCGTGAGATTGTAAACA 3142
Query 2558 GGATCCAGAAACTACG-AAAGAAGTCTTGTCTGGAACCAACAGATTTTGTTGAAGTGTAC 2616
|||||||||||||| | ||| ||||| |||||||||||||||| ||||| |||||||||
Sbjct 3143 GGATCCAGAAACTAAGGAAA-AAGTCAGGTCTGGAACCAACAGACTTTGTGGAAGTGTAC 3201
Query 2617 TTTGAATCATTGGAC-ATGGGTGACTCTGTTGTGC-AA-CGAGTTCTA-TGCTCCCAGGA 2672
|| ||||||||||| | || ||| |||||| | | || | ||||||| | ||| |||||
Sbjct 3202 TTCCAATCATTGGACGA-GGATGAATCTGTT-T-CTAAACAAGTTCTAGT-CTCTCAGGA 3257
Query 2673 ACAATACATTAGGGAAAAAATTGGCTCCCCTTTGCTTCAT-TCTACTTTGATGCCACCAG 2731
|||| |||| | ||| |||||||||| |||| ||| | |||| ||| |||||| ||
Sbjct 3258 ACAAAACATCAAGGATTCAATTGGCTCCACTTTACTTT-TGTCTAGTTTAATGCCATCAC 3316
Query 2732 ATGTAGTTATAATATCTGATGAGA 2755
||| ||| |||||| | |||||||
Sbjct 3317 ATGCAGTCATAATAGCCGATGAGA 3340
Score = 274 bits (148), Expect = 4e-72
Identities = 227/265 (86%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 2787 TAAGATAAGTTTGGCTAGACCAGCTTTAAAGTTCAATGAAGAAGCTCTTCTCGCTTTGTA 2846
||||||||||||||||||||| ||||| |||||||||||||| ||| |||| ||||| ||
Sbjct 3399 TAAGATAAGTTTGGCTAGACCGGCTTTGAAGTTCAATGAAGAGGCTGTTCTTGCTTTATA 3458
Query 2847 CTCGGGAGATGTGAAATTC-GCAACCCGGCTCCAAACATACTTGTTATCGAGGGATCATT 2905
||| |||||||||||| || |||||| |||| ||||||||||||||||| ||||||||||
Sbjct 3459 CTCAGGAGATGTGAAA-TCTGCAACCGGGCTTCAAACATACTTGTTATCAAGGGATCATT 3517
Query 2906 CAAATTTAAAATCAGAGTTCCAAGCCGGAGATGGGAAGATAACTGCAAGTTGCATTGAAA 2965
| ||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 3518 CGAATTTGAAGTCAGAGTTCCAAGCCGGAGATGGGAAGATAACTGTAAGCTGCATTGAAA 3577
Query 2966 A-GCTCCCAGTTGTGATTGTGATTCTAGGAGAACATTTGCATTTAACAGTTGGTGACT-A 3023
| | | || |||| || |||| |||| || |||||| | ||||| | || || || | |
Sbjct 3578 ATG-TGCCTGTTGCGACTGTGGTTCTTGGCGAACATCTCCATTTGAGTGTCGGCGA-TGA 3635
Query 3024 CTTGTTGAGCAAGAAGAACGCGTGA 3048
||| |||||||||| |||||| |||
Sbjct 3636 CTTATTGAGCAAGAGGAACGCATGA 3660
> AT3G23140.1 | Symbols: URO | C2H2 and C2HC zinc fingers superfamily
protein | chr3:8250579-8251097 FORWARD LENGTH=519
Length=519
Score = 608 bits (329), Expect = 9e-173
Identities = 447/500 (89%), Gaps = 24/500 (5%)
Strand=Plus/Plus
Query 40 TCCGGCTCCAGCTCTGGAGATAACCGCCGGACTTACGACTGCAACATTTGCCAGAGAGGC 99
|||||||| |||||||||| |||||||||||||| |||||| |||| ||| |||||||
Sbjct 28 TCCGGCTCTGGCTCTGGAGAAAACCGCCGGACTTATGACTGCGACATCTGCAAGAGAGGT 87
Query 100 TTCACGAATCCTCAAGCTCTCGGTGGTCACAATAACATCCACCGCAGGGAACGCGAAAGA 159
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 TTCACGAATCCTCAAGCCCTCGGTGGTCACAATAACATCCACCGCAGGGAACGCGAAAGA 147
Query 160 TACCCCTCCTCCTCTTTTTCTTCTCACTCATTTCCATTTTCTCTGCCTTTACTGTCTCAG 219
|||||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||
Sbjct 148 TACCCCTCCTCCTCTTCTTCTTCTCACTCATTTCCATTTTCTCTTCCGTTACCATCTCAG 207
Query 220 TATCCATCCTCCTCCATAAACTTCACAAACCCTAATAATAACAACAACCCGCCTCCTTAT 279
| | | |||||||| | | |||||| | | | || | ||||| |||||||||
Sbjct 208 TCT-C--CCTCCTCC-T---C--CACAAA--C---T--TCAC-A-AACCCTCCTCCTTAT 249
Query 280 TTTCCGACCATTGAGTCATACCAACACCAAGGGTCTCAGCCACCGATTAACCCTAGCCAC 339
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 250 TTTCCGACCATTGAGTCATACCTACACCAAGGGTCTCAGCCACCTATTAACCCTAGCCAC 309
Query 340 AACACACAATACTTTGGATCATCATCATCATCAAGAGGAGGAGGGAGATTTTCTCAAGGG 399
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 310 AACACACAATACTTTGGATCATCATCATCATCAAGAGGAGGAGGGAGATTTGCTCAAGGG 369
Query 400 GAC-TATCATGATCTCAATTTGAGCTTAGGGCTCGGATCCATGAATGACA-ATGATGACA 457
| | | ||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 370 G-CGTCTCATGATCTTAATTTGAGCTTAGGGCTCGGATCCATGAATGA-AGATGATGACA 427
Query 458 CTTACCAGAGCCCACCAGAGACTGGAGGTTCTCAGCCCCAAGATGAG-GATCTTGATCTT 516
|| ||| ||||||||||||||| ||||||||||| || ||||||| | ||||||||||||
Sbjct 428 CTCACCGGAGCCCACCAGAGACCGGAGGTTCTCAACCTCAAGATG-GTGATCTTGATCTT 486
Query 517 GATCTTCGACTTGGCGATCA 536
||||||||||| |||| |||
Sbjct 487 GATCTTCGACTCGGCGGTCA 506
> AT3G23145.1 | Symbols: | zinc ion binding;isoleucine-tRNA ligases;ATP
binding;aminoacyl-tRNA ligases;nucleotide binding
| chr3:8252138-8253196 FORWARD LENGTH=477
Length=477
Score = 119 bits (64), Expect = 2e-25
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2413 AAGATTGTCAGGGATTTCAAACGTCCAGATGGTTTGAAAGATACAGAGATTGATGCAGCT 2472
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AAGATTGTCAGAGATTTCAAACGTCCAGATGGTTTGAAAGATACAGAGATTGATGCAGCT 405
Query 2473 GTAGATGATGATG 2485
|||||| | ||||
Sbjct 406 GTAGATAAAGATG 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151554334803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5