BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342480
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23360.1 | Symbols: | Protein phosphatase 2C family protein... 1094 0.0
> AT3G23360.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:8355257-8356381 REVERSE LENGTH=783
Length=783
Score = 1094 bits (592), Expect = 0.0
Identities = 726/790 (92%), Gaps = 11/790 (1%)
Strand=Plus/Plus
Query 1 ATGGGCTTCTTAGATCTCCCTTTCATGCTCAAGGCGTTCCAATTTAGACGACTTGTAGTT 60
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1 ATGGGCTTCTTAGATCTCCCTTTCATGCTCAAGGCGTTCCGGTTTAGAAGACTTGTAGTT 60
Query 61 GAGGAT-GGAAGGAGAAGGAAGAAGAATAAACCATCATGGTTAACTCCGGTTTCTCATGG 119
|| ||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 61 GAAGATGGGAA-GAGAAGGAAGAAGAAGAAACCATTATGGTTAACTCCGGTTTCTCATGG 119
Query 120 ATTCTATACCGTTGACCGGTTAAGCAATATCGACAATTCATCGAATGATGATTCGGTTTT 179
|| |||||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 120 ATACTATACGGTTGACCGGTTAAGCTATGCCGACAATTCATCGAATGATGATTCGGTTTT 179
Query 180 TGTACAAAGAGAGCAACACAGTGAAGAGCTTGAGATTTGGTTCTTTGGAGTTTCGAAA-G 238
||| || ||||||||||| ||||| ||||||||||||||||| |||||||| || ||| |
Sbjct 180 TGTTCAGAGAGAGCAACAAAGTGATGAGCTTGAGATTTGGTTATTTGGAGTCTC-AAATG 238
Query 239 CTGAAAGAGGGAAAGAGATTGTCAAATATATGCAAAACCATCTCTTTGATAAGCTCCCCA 298
||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 CTGGAACAGGGAAAGAGATTGTCAAATATATGCAAAACCATCTATTTGATAAGCTCCCCA 298
Query 299 ATGAGCTCGGAATTATGAGAAAGTGTAAAGAGACAATGAGAGGAGCGTACGTGGAGGAAG 358
|||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||
Sbjct 299 ATGAGCTCGGGATTATGAGAAAGTGTAAAGAGACTATGAGAAGAGCGTACGTTGAGGAAG 358
Query 359 AGAGAACCGGTGGCTCAGCCGCTTCGGTTATGGTGGTGAACGGAGAAAAGCTAGCCATGG 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 359 AGAGAACCGGTGGCTCAGCCGCTTCGGTTATGGTGGTGAACGGAGAGAAGCTAGCTATAG 418
Query 419 CGAGTATCGGGGGCCATAGAGTAGTGGTTTGCAGAGACGGCGAGGCTCATCAAATCAGAG 478
||||||| |||| |||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 419 CGAGTATTGGGGACCATAGAGTAGTGGTTTGCAAAGATGGTGAGGCTCATCAAATCAGAG 478
Query 479 ATA--AAAACCTGAAATCCTCAAAACATTGGTCACAATTTATTTTCCCAGTTTGTAATCA 536
||| ||| ||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 479 ATAGGAAAGCCT-CAA----CAAAACATTGGTCACAATTTATTTTCCCTGTTTGTAATCA 533
Query 537 AGAAGATTTAGAAGATGAATCAGATCAAAGAAATTCAGAACTTGTAGTGATTACAGAGAA 596
|| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 534 AGGAGAAGAAGAAGATGAATCAGATCCAAGAAATTCAGAGCTTGTAGTGATTACAGAAAA 593
Query 597 GATTAATACAGATACAGAGTTTATCATTATCGGTAGCTCTGGAATTTGGGAGGTTATGAA 656
||||||| |||||||||| |||||||||||||||||| | || ||||||||||| |||||
Sbjct 594 GATTAATTCAGATACAGAATTTATCATTATCGGTAGCCCCGGGATTTGGGAGGTGATGAA 653
Query 657 GAATCAAGAAGCGATTAATCTAATCAGACACATAGAAGATCCTAAAGAAGCTGCAAAATG 716
|| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 654 GAGTCAAGAAGCGATTAACCTAATAAGACACATAGAGGATCCTAAAGAAGCTGCAAAATG 713
Query 717 TTTAGCTAAAGAAGCTTTAAACAGGATTAGCAAAAGCAGCATTTCTTGCGTTGTAATTCG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TTTAGCTAAAGAAGCTTTAAACAGGATTAGCAAAAGCAGCATTTCTTGCGTTGTAATTCG 773
Query 777 GTTTGACTAA 786
||||| ||||
Sbjct 774 GTTTGGCTAA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5