BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342532

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding...   302    2e-81


> AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding 
protein 4 | chr3:8606477-8608055 REVERSE LENGTH=792
Length=792

 Score =  302 bits (163),  Expect = 2e-81
 Identities = 177/184 (96%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  7    TTCTGCAACAAACTTAGCGGTATTTTGAGACAAGGGGTTTCTCAGAGCTCAAATGTTCCA  66
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  103  TTCTGCAACAAACTTAGCGGTATCTTGAGACAAGGGGTTTCTCAGAGCTCAAATGGTCCA  162

Query  67   GTGACATCTATGCTTGGCTCTCTTCGTTACATGTCCACTAAGCTTTTTGTTGGTGGTCTC  126
            || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  163  GTTACATCTATGCTTGGCTCTCTTCGTTACATGTCCTCTAAGCTTTTTGTTGGTGGTCTC  222

Query  127  TCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCTCTAACTTTGGCGAAGTCACA  186
            ||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct  223  TCTTGGGGAACTGATGACAGCTCCTTAAAGCAAGCTTTCACTAGCTTTGGTGAAGTCACA  282

Query  187  GAAG  190
            ||||
Sbjct  283  GAAG  286



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5