BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342541
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23910.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1956 0.0
AT3G24255.1 | Symbols: | RNA-directed DNA polymerase (reverse ... 1613 0.0
AT3G23900.1 | Symbols: | RNA recognition motif (RRM)-containin... 195 1e-48
> AT3G23910.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: RNA-directed DNA polymerase (reverse transcriptase)-related
family protein (TAIR:AT3G24255.2); Has 562 Blast hits
to 532 proteins in 147 species: Archae - 28; Bacteria - 51;
Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other
Eukaryotes - 153 (source: NCBI BLink). | chr3:8636427-8639442
REVERSE LENGTH=1531
Length=1531
Score = 1956 bits (1059), Expect = 0.0
Identities = 1202/1271 (95%), Gaps = 10/1271 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGAAACCCACGACGGACCTCTCGATCTCCAAGAGATTCGCAGTCGCGTTAAA 60
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 99 ATGGAAGAAGAAACCCACGACGGATCTCTCGATCTCCAAGAGATTCGCAGGCGCGTGAAA 158
Query 61 GAGCTCGAGTTCATTCACCGGAATTGCAGAGATGAGCCTGGAGAATCGTGTAGTTCCGAT 120
|||||||| ||| ||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 159 GAGCTCGATTTCTTTCCCCGGAATTGCAGAGAAGAGCCTGTAGAATCGTGTAGTTCCGAT 218
Query 121 TCCGAGACTC---TGGTTCAAGATTTTGTTCTTCAGTTTGAACCAAAGGTGAAAGAGATT 177
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TACGAGACTCTGGTGGTTCAAGATTTTGTTCTTCAGTTTGAACCAAAGGTGAAAGAGATT 278
Query 178 GTTGAAGATTACAGTGATGTTGATTTATTGGATGTTGAAGATTCAGATGCTTACTTGGAG 237
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GTTGAAGAATACGGCGATGTTGATTTATTGGATGTTGAAGATTCAGATGCTTACTTGGAG 338
Query 238 TACTTGAGAAAGGAGCTTCATTCTGTGGAGGCTGAAAGTGCCAAAGTTTCTGAAGAAATT 297
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 339 TACTTGAGAAATGAGCTTCAGTCTGTGGAGGCTGAAAGTGCCAAAGTTTCTGAAGAAATT 398
Query 298 GAACGTCTTTCTAAGTCTCATGCCCAAGATTCTAGTAGGCCGGAAAGGAATCTTGAAGGT 357
|||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 399 GAACGTCTTTCTCAGTCTCATGCCCAAGATTCTAGTAGGTTGCAAAGGGATCTTGAAGGT 458
Query 358 CTTTTACTGTCACTGGATTCGATGTCATCACAGGATGTGGAGAAGTCAAAAGAGAATCCT 417
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 459 CTTTTACTGTCACTGGATTCTATGTCATCTCAGGATGTGGAGAAGTCAAAAGAGAATCAA 518
Query 418 CCATCTAGCAGCTCAATGGAAGTATGTGAAGGGAATGATGATGACAAGTTTAAGATGTTT 477
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 519 CCATCTAGCAGCTCAATGGAAGTATGTGAAGTGATTGATGATGACAAGTTTAAGATGTTT 578
Query 478 GAACTCGAAAATCAGATGGAGGAGAAAA-GAAGTATTCTTAAGTCACTGGAAGATCTGGA 536
|||||||||||||||||||||||||||| || | |||||||||||| |||||||||||||
Sbjct 579 GAACTCGAAAATCAGATGGAGGAGAAAAGGATG-ATTCTTAAGTCATTGGAAGATCTGGA 637
Query 537 TTCTTTACGTAAAAGGTTTGATGCTGCAGAACAAGTTGAGGACGCATTGACAGGCTTGAA 596
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTCGTTACGTAAAAGGTTTGATGCTGCAGAACAAGTTGAGGACGCATTGACAGGCTTGAA 697
Query 597 GGTGCTCGAGTTTGATGGAAACTTTATTAGGCTCCAACTGCGAACATATATTCCAAAACT 656
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 698 GGTGCTCGAGTTTGACGGAAACTTTATTAGGCTCCAACTGCGAACATATATTCAAAAACT 757
Query 657 AGACAGCTTGCTTGGACAGCAAAAATTTGAACACACTACTGAGCCATCTGAATTGATCCA 716
|||| | || ||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 758 AGACGGTTTTCTTGGACAGCACAAATTTGACCACATTACTGAGCCATCTGAATTGATCCA 817
Query 717 TGAATTGCTAATATAC-TTGAAGGATAAAACTACAGAGATAACAAAATTTGAGATGTTTC 775
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TGAATTGCTAATATACCTT-AAGGATAAAACTACAGAGATAACAAAATTTGAGATGTTTC 876
Query 776 CAAATGATGTGTACATAGGAGACATCATCGAGGCTGCTGATTCTTTCAGGCAGGTAAGGT 835
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 877 CAAATGATATATACATAGGAGACATCATCGAGGCAGCTGATTCTTTCAGGCAGGTAAGGT 936
Query 836 TACACTCTGCAGTGCTAGACACAAGGTCTTCAGTCCAGTGGGTTGTCGCCAAAGTGCAAG 895
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 937 TACACTCTGCAGTGCTAGACACAAGATCTTCAGTCCAGTGGGTTGTCGCCAAAGTGCAAG 996
Query 896 ATAGAATTATTTCATCCACTCTGAGAAAATATATTGTGACGAGTTCGAAAACAATCAGGC 955
||| |||||||||| | ||| |||||||||||||||||| ||||||||||||||| |||
Sbjct 997 ATAAAATTATTTCAACAACTTTGAGAAAATATATTGTGATGAGTTCGAAAACAATTAGGT 1056
Query 956 ACACGTTCGAATACTACGACAAAGATGAAACAATTGTGGGTCATATAGCTGGAGGTATTG 1015
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1057 ACACGTTTGAATACTACGACAAAGATGAAACAATTGTGGCTCATATAGCTGGAGGTATTG 1116
Query 1016 ATGCATTTTTAAAGGTCTCCGATGGTTGGCCACTGTTGAATACCCCATTGAAGCTTGAAT 1075
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1117 ATGCATTTTTAAAGGTCTCTGATGGTTGGCCACTGCTGAATACCCCATTGAAGCTTGCAT 1176
Query 1076 CTCTCAAGAACTCTGACAATCAGTCAAAGGGAATTTCTCTGAGCCTTATCTGCAAAGTTG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 CTCTCAAGAACTCTGACAATCAGTCAAAGGGAATTTCTCTGAGCCTTATCTGCAAAGTTG 1236
Query 1136 AGGATCTAGCGAACTCCTTGGATTTACAGACCCGGCAAAACTTATCAGGCTTCATGGATG 1195
|||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1237 AGGAACTAGCGAATTCCTTGGATTTAGAGACCCGGCAAAACTTATCAGGCTTCATGGATG 1296
Query 1196 CTATTGAGAAAATACTCGTGCAGCAAACCCGTGAAGAACTCCTCCAGTCCAATGAATCCT 1255
| |||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1297 CAATTGAGAAAATACTCGTGGAGCAAACCCGTGAAGAACTCC---AGTCCAATAAATCCT 1353
Query 1256 CCCAAAAATGA 1266
||||||| |||
Sbjct 1354 CCCAAAAGTGA 1364
> AT3G24255.1 | Symbols: | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | chr3:8788854-8793368
FORWARD LENGTH=2777
Length=2777
Score = 1613 bits (873), Expect = 0.0
Identities = 990/1047 (95%), Gaps = 5/1047 (0%)
Strand=Plus/Plus
Query 221 CAGATGCTTACTTGGAGTACTTGAGAAAGGAGCTTCATTCTGTGGAGGCTGAAAGTGCCA 280
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1575 CAGATGCTTACTTGGAGTACTTGAGAAATGAGCTTCAGTCTGTGGAGGCTGAAAGTGCCA 1634
Query 281 AAGTTTCTGAAGAAATTGAACGTCTTTCTAAGTCTCATGCCCAAGATTCTAGTAGGCCGG 340
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 1635 AAGTTTCTGAAGAAATTGAACGTCTTTCTCAGTCTCATGCCCTAGATTCTAGTAGGTTGC 1694
Query 341 AAAGGAATCTTGAAGGTCTTTTACTGTCACTGGATTCGATGTCATCACAGGATGTGGAGA 400
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1695 AAAGGGATCTTGAAGGTCTTTTACTGTCACTGGATTCTATGTCATCTCAGGATGTGGAGA 1754
Query 401 AGTCAAAAGAGAATCCTCCATCTAGCAGCTCAATGGAAGTATGTGAAGGGAATGATGATG 460
||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1755 AGTCAAAAGAGAATCAACCATCTAGCAGCTCAATGGAAGTATGTGAAGTGATTGATGATG 1814
Query 461 ACAAGTTTAAGATGTTTGAACTCGAAAATCAGATGGAGGAGAAAA-GAAGTATTCTTAAG 519
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 1815 ACAAGTTTAAGATGTTTGAACTCGAAAATCAGATGGAGGAGAAAAGGATG-ATTCTTAAG 1873
Query 520 TCACTGGAAGATCTGGATTCTTTACGTAAAAGGTTTGATGCTGCAGAACAAGTTGAGGAC 579
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1874 TCATTGGAAGATCTGGATTCGTTACGTAAAAGGTTTGATGCTGCAGAACAAGTTGAGGAC 1933
Query 580 GCATTGACAGGCTTGAAGGTGCTCGAGTTTGATGGAAACTTTATTAGGCTCCAACTGCGA 639
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1934 GCATTGACAGGCTTGAAGGTGCTCGAGTTTGACGGAAACTTTATTAGGCTCCAACTGCGA 1993
Query 640 ACATATATTCCAAAACTAGACAGCTTGCTTGGACAGCAAAAATTTGAACACACTACTGAG 699
|||||||||| |||||||||| | || ||||||||||| |||||||| |||| |||||||
Sbjct 1994 ACATATATTCAAAAACTAGACGGTTTTCTTGGACAGCACAAATTTGACCACATTACTGAG 2053
Query 700 CCATCTGAATTGATCCATGAATTGCTAATATACTTGAAGGATAAAACTACAGAGATAACA 759
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2054 CCATCTGAATTGATCCATGAATTGCTAATATACCTGAAGGATAAAACTACAGAGATAACA 2113
Query 760 AAATTTGAGATGTTTCCAAATGATGTGTACATAGGAGACATCATCGAGGCTGCTGATTCT 819
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 2114 AAATTTGAGATGTTTCCAAATGATATATACATAGGAGACATCATCGAGGCAGCTGATTCT 2173
Query 820 TTCAGGCAGGTAAGGTTACACTCTGCAGTGCTAGACACAAGGTCTTCAGTCCAGTGGGTT 879
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2174 TTCAGGCAGGTAAGGTTACACTCTGCAGTGCTAGACACAAGATCTTCAGTCCAGTGGGTT 2233
Query 880 GTCGCCAAAGTGCAAGATAGAATTATTTCATCCACTCTGAGAAAATATATTGTGACGAGT 939
||||||||||||||||||| |||||||||| | ||| |||||||| || |||||| ||||
Sbjct 2234 GTCGCCAAAGTGCAAGATAAAATTATTTCAACAACTTTGAGAAAAGATTTTGTGATGAGT 2293
Query 940 TCGAAAACAATCAGGCACACGTTCGAATACTACGACAAAGATGAAACAATTGTGGGTCAT 999
||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 2294 TCGAAAACAATTAGGTACACGTTTGAATACTACGACAAAGATGAAACAATTGTGGCTCAT 2353
Query 1000 ATAGCTGGAGGTATTGATGCATTTTTAAAGGTCTCCGATGGTTGGCCACTGTTGAATACC 1059
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2354 ATAGCTGGAGGTATTGATGCATTTTTAAAGGTCTCTGATGGTTGGCCACTGCTGAATACC 2413
Query 1060 CCATTGAAGCTTGAATCTCTCAAGAACTCTGACAATCAGTCAAAGGGAATTTCTCTGAGC 1119
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2414 CCATTGAAGCTTGCATCTCTCAAGAACTCTGACAATCAGTCAAAGGGATTTTCTCTGAGC 2473
Query 1120 CTTATCTGCAAAGTTGAGGATCTAGCGAACTCCTTGGATTTACAGACCCGGCAAAACTTA 1179
|||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2474 CTTATCAGCAAACTTGAGGAACTAGCGAACTCCTTGGATTTAGAGACCCGGCAAAACTTA 2533
Query 1180 TCAGGCTTCATGGATGCTATTGAGAAAATACTCGTGCAGCAAACCCGTGAAGAACTCCTC 1239
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2534 TCAGGCTTCATGGATGCTGTTGAGAAAATACTCGTGCAGCAAACCCGTGAAGAACTCA-- 2591
Query 1240 CAGTCCAATGAATCCTCCCAAAAATGA 1266
|||||||||||||||||||||| |||
Sbjct 2592 -AGTCCAATGAATCCTCCCAAAAGTGA 2617
Score = 224 bits (121), Expect = 2e-57
Identities = 149/162 (92%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGAAACCCACGACGGACCTCTCGATCTCCAAGAGATTCGCAGTCGCGTTAAA 60
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||
Sbjct 96 ATGGAAGAAGAAACCCACGACGGATCTCTCGATCTCCAAGAGATTCGCAGGCGCGTGAAA 155
Query 61 GAGCTCGAGTTCATTCACCGGAATTGCAGAGATGAGCCTGGAGAATCGTGTAGTTCCGAT 120
||| |||| ||| ||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 156 GAGTTCGATTTCTTTCCCCGGAATTGCAGAGAAGAGCCTGTAGAATCGTGTAGTTCCGAT 215
Query 121 TCCGAGACTCTGGT--T-CAAGATTTTGTTCTTCAGTTTGAA 159
| |||||||||||| | ||||||||||||||||||||||||
Sbjct 216 TACGAGACTCTGGTGGTTCAAGATTTTGTTCTTCAGTTTGAA 257
> AT3G23900.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:8631606-8636045 REVERSE LENGTH=3417
Length=3417
Score = 195 bits (105), Expect = 1e-48
Identities = 137/152 (90%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 324 AGATTCTAGT-AGGCCGGAAAGGAATCTTGAAGGTCTTTTACTGTCACTGGATTCGATGT 382
|||||||||| | || |||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 2977 AGATTCTAGTCA-GCAGGAAAGGAATCTTGAAGGTCATTTATTGTCATTGGATTCGATGT 3035
Query 383 CATCACAGGATGTGGAGAAGTCAAAAGAGAATCCTCCATCTAGCAGCTCAATGGAA-GTA 441
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | |
Sbjct 3036 CATCACAGGATGTGGAGAAGTCAAAAGAGAATCCACCATCTAGCAGCTCAGTGGAAAG-A 3094
Query 442 TGTGAAGGGAATGATGATGACAAGTTTAAGAT 473
|||| | ||||||||||| |||||||||||
Sbjct 3095 GGTGATGCAAATGATGATGAGAAGTTTAAGAT 3126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5