BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342565

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24200.2 | Symbols:  | FAD/NAD(P)-binding oxidoreductase fam...   141    6e-33


> AT3G24200.2 | Symbols:  | FAD/NAD(P)-binding oxidoreductase family 
protein | chr3:8747831-8751369 REVERSE LENGTH=1991
Length=1991

 Score =  141 bits (76),  Expect = 6e-33
 Identities = 92/100 (92%), Gaps = 0/100 (0%)
 Strand=Plus/Plus

Query  4    GAGAGTAATGCAAAAAAGAATTCTAGTGACGATGGTCAACAACATGACATTGCTATTGTC  63
            ||||| ||||||  ||| ||||| | ||||||||||| ||||||||||||||||||||| 
Sbjct  321  GAGAGCAATGCATTAAATAATTCCACTGACGATGGTCCACAACATGACATTGCTATTGTT  380

Query  64   GGTGGTGGAATGGTTGGAATCGCTTTAGCTGCTTCATTGG  103
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  381  GGTGGTGGAATGGTTGGAATCGCTTTAGCTGCTTCATTGG  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5