BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342592 Length=474 Score E Sequences producing significant alignments: (Bits) Value AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein h... 231 3e-60 > AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8822979-8829694 REVERSE LENGTH=3730 Length=3730 Score = 231 bits (125), Expect = 3e-60 Identities = 166/184 (90%), Gaps = 9/184 (5%) Strand=Plus/Plus Query 266 GAATCACAACGGCTTCTAAGAAAGTCAAGACGTCAAGTGATGTTCTCACTGACAAAGATC 325 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 293 GAATCACAACGGCTTCTAAGAAAGTGAAGACGTCAAGTGATGTTCTCACTGACAAAGATC 352 Query 326 TCTCTCATTTGGTTTGGTGGAAGGAGA-----CA----TGTCAGAAACCATCTACTCTTC 376 ||||||||||||||||||||||||||| || ||| |||||||||||||||||| Sbjct 353 TCTCTCATTTGGTTTGGTGGAAGGAGAGATTGCAGACATGTAAGAAACCATCTACTCTTC 412 Query 377 AGCTTATTCAAAGGCATATGTACACTAATTTACTGGGTTTGGACCCCATCATGAGGAATG 436 |||||||| |||||| ||||||||| |||||||| ||||||||||| | | ||||||||| Sbjct 413 AGCTTATTGAAAGGCTTATGTACACCAATTTACTTGGTTTGGACCCTAGCTTGAGGAATG 472 Query 437 GAAG 440 |||| Sbjct 473 GAAG 476 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22555132003 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5