BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342592

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein h...   231    3e-60


> AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein 
homolog 1 | chr3:8822979-8829694 REVERSE LENGTH=3730
Length=3730

 Score =  231 bits (125),  Expect = 3e-60
 Identities = 166/184 (90%), Gaps = 9/184 (5%)
 Strand=Plus/Plus

Query  266  GAATCACAACGGCTTCTAAGAAAGTCAAGACGTCAAGTGATGTTCTCACTGACAAAGATC  325
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  293  GAATCACAACGGCTTCTAAGAAAGTGAAGACGTCAAGTGATGTTCTCACTGACAAAGATC  352

Query  326  TCTCTCATTTGGTTTGGTGGAAGGAGA-----CA----TGTCAGAAACCATCTACTCTTC  376
            |||||||||||||||||||||||||||     ||    ||| ||||||||||||||||||
Sbjct  353  TCTCTCATTTGGTTTGGTGGAAGGAGAGATTGCAGACATGTAAGAAACCATCTACTCTTC  412

Query  377  AGCTTATTCAAAGGCATATGTACACTAATTTACTGGGTTTGGACCCCATCATGAGGAATG  436
            |||||||| |||||| ||||||||| |||||||| ||||||||||| | | |||||||||
Sbjct  413  AGCTTATTGAAAGGCTTATGTACACCAATTTACTTGGTTTGGACCCTAGCTTGAGGAATG  472

Query  437  GAAG  440
            ||||
Sbjct  473  GAAG  476



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5