BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342596
Length=3369
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:8... 4549 0.0
> AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:8832085-8835722
REVERSE LENGTH=3399
Length=3399
Score = 4549 bits (2463), Expect = 0.0
Identities = 3132/3439 (91%), Gaps = 110/3439 (3%)
Strand=Plus/Plus
Query 1 ATGGATATGACTACTTGTGTTGCTAGAAGAACTCGTTCAAGGACTGAATCTTACTTGAAT 60
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGATATGACTAGTTGTGTTGCTAGAAGAACTCGTTCGAGGACTGAATCTTACTTGAAC 60
Query 61 TCGATTCTCAATAGATCAAAGGGGATTACTGGAGAAG-AG--G---A-T-TC------GT 106
||||||||||||| ||||||||||||| ||||||||| || | | | || ||
Sbjct 61 TCGATTCTCAATAAATCAAAGGGGATTTCTGGAGAAGAAGAAGATCAGTCTCTGGGTTGT 120
Query 107 -TAAATTCGAGGACGGAGAAGAGAAGAGTGAACATGCGTAATGCTTGTTCACCGTCTCCG 165
||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| ||||||
Sbjct 121 GTAAATTCGAGGACTGAGAAGAGGAGAGTTAACATGCGTGATGCTTGTTCACCTTCTCCG 180
Query 166 AGGAAGAAGAAACGACGGCGGAGTAAGGTGGGTGAGGATGATGACGACGACGATGTTG-A 224
||||||||||||||||||| | | | || |||||||| ||||||||||||| |
Sbjct 181 AGGAAGAAGAAACGACGGC-G-G--A----GG-AAGGATGAT---GACGACGATGTTGTA 228
Query 225 GTTTATCAGAACTGATTATCCAGAAGGTAAGCGTGATGGTGAGAATGTTGGTTCTACTTC 284
||| | |||||||| ||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 229 -TTTGTTAGAACTGAATATCCTGAAGGTAAGCGAGATGATGAGAATGTTGGTTCTACTTC 287
Query 285 TGGGAATTTTGAATCGAAATCGCTTGA------T--T---G-TTCTGATTTTGATG-TGG 331
||||||||| ||||||||||| |||| | | | || ||||||||||| | |
Sbjct 288 TGGGAATTTACAATCGAAATCGTTTGATTTTGGTGATAGGGTTTGTGATTTTGATGCT-G 346
Query 332 ATGATGGTAACTTGGGAGGTGAAGAGAGAA-TTTCTAATTTTAACCCTTTATCTCCGGAT 390
||||| |||| |||||| ||||||||| || |||||||||||||||| || | |||
Sbjct 347 ATGATCGTAATTTGGGATGTGAAGAGA-AAGCTTCTAATTTTAACCCTATAGATGATGAT 405
Query 391 GATGATGTTGTTTTTGTTAGAACTGTTTTGAGAGAGAATGATCATGTTGAAGAGGATGAT 450
|||||||||||||| ||| |||||||| |||||||||||||||||| || || |||||
Sbjct 406 GATGATGTTGTTTTCGTTGGAACTGTTCAGAGAGAGAATGATCATGTAGAGGATGATGAC 465
Query 451 AATGTTGGTTCTGCTTCGGTGATTTCTCCTAGGGTTTGCGATTTTGATGTGGATGGTGCT 510
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 466 AATGTTGGTTCTGCTTCGGTGATTTCTCCTAGGGTTTGTGATTTTGATGAGGATGATGCT 525
Query 511 GATTTGAGGGGTGAGGAGAAAACTTCTACTTTGGATCATTTATCTCCGGATGATGATGAT 570
| |||| ||| | ||| || | | | ||||||||||||||||||||||
Sbjct 526 AAAGTGAGTGGT-A-AAGAGAA---C--C-------C-TTTATCTCCGGATGATGATGAT 570
Query 571 GATGTTGTTTTTGTTGGAACTGTTC-C-GG-GAG-AT--G--T-T-GAGGATGGCAATGT 620
||||||||||| |||||||| || | || ||| || | | | ||||||| |||||
Sbjct 571 GATGTTGTTTTCCTTGGAACT-ATCGCGGGAGAGAATCAGCATGTCGAGGATGTCAATGC 629
Query 621 TGGTTCTGGGGTTTGTGATATTCTTTTGGATGATGCTAATTTGAGGGGTGAGGAGAAGAC 680
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 630 TGGTTCTGAGGTTTGTGATATTCTTCTGGATGATGCTAATTTGAGGGGTGAGGAGAAGAC 689
Query 681 TTATGAGTCTGATGAGGTTGTGAGTCTAAGTTTTAATTCTGATGACGAGG-A-A-----T 733
||||| ||||||||||||||| |||||||||| || ||||||||| |||| | | |
Sbjct 690 TTATGTGTCTGATGAGGTTGTAAGTCTAAGTTCTAGTTCTGATGATGAGGAAGACCCTTT 749
Query 734 ----G---T-GGGACTGATTCTGGAGAGGAAGTTAGTGGCGAAGATAGAGATTCTGGTGA 785
| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 750 AGAGGAATTAGGGACTGATTCAAGAGAGGAAGTTAGTGGCGAAGATAGAGATTCTGGTGA 809
Query 786 GATTGATATGAATGAAGATGCTAATGA--C---C-CATCTTATAACATGGAGGAAAGTTC 839
|| ||||||| |||||||||||||||| | | ||||| || || ||| |||||||||
Sbjct 810 GAGTGATATGGATGAAGATGCTAATGATTCTGACTCATCTGATTACGTGGGGGAAAGTTC 869
Query 840 AGATCCTTCTTG-TG-AGGAGAGCTCTGATAGTGATTTCGTTCGTTCTGAGGATGAAGAG 897
|||| |||| || || | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 870 AGATTCTTC-TGATGTA-GAGAGCTCTGATAGTGATTTCGTTTGTTCTGAGGATGAAGAG 927
Query 898 GGTGGTACCGGAGAC-ATTGCTAAAGGCGAAAAGAACCCAAGTGAAAAAGTATACTACCA 956
||||||||| ||||| | ||||| | ||||||||||||||||||||||||||||| | ||
Sbjct 928 GGTGGTACCAGAGACGA-TGCTACATGCGAAAAGAACCCAAGTGAAAAAGTATACCATCA 986
Query 957 AAAGAAGTCGAGGAGTTTTCGTAGGAAGCATAACTTGGAAGTAATTAACCTGCTAGCTAA 1016
||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 987 TAAGAAGTCGAGGACTTTTCGTAGGAAGCATAACTTCGATGTAATTAACCTGCTAGCTAA 1046
Query 1017 ATCTAT-TTGGGAGAGCAAAGACGTTTTCAAGGAAGACATTTGCTCCGGGGACAAAATGG 1075
|||||| || ||||||||||||||||||||||||||| |||| |||| |||||||||| |
Sbjct 1047 ATCTATGTT-GGAGAGCAAAGACGTTTTCAAGGAAGATATTTTCTCCTGGGACAAAATAG 1105
Query 1076 CAGAGGTTGATTCTAGAGAAGATGGTATAAATAGGGAGAGCTCAAGTGAAAAGGTAAATG 1135
||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||
Sbjct 1106 CAGAGGTTGATTCTAGAGAAGATCCTGTAGTTAGGGAGAGCTCAAGTGAGAAGGTAAATG 1165
Query 1136 AACAGGGGAAACCAAGGGAACCGAGGAGTTTCCATAGGGCGAGGGAGAAGAACCACTTGA 1195
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1166 AACATGGGAAACCAAGGGAACGGAGGAGTTTCCATAGGGTGAGGGAGAAGAACCACTTGA 1225
Query 1196 ATGGTGAGAGTTTTTATGGTGGCGAAAATCTATGTGATGGAGAAGAGACAATACACTACT 1255
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 1226 ATGGTGAGAGTTTTTATGGTGGCGAAAAACTCTGTGATGGAGAAGAGACAATAAACTACT 1285
Query 1256 CGACAGAAGATTCACCTCCATTAAACTTGAGATTTGGCTGCGAGGAGCCTGTGCTTATCG 1315
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 CGACAGAAGATTCACCTCCTTTAAACTTGAGATTTGGCTGCGAGGAGCCTGTGCTTATCG 1345
Query 1316 AGAAAACAGAAGAGGAGAAAGAATTAGACAGCTTGTGGGAAGATATGGCCGTTGCTCTAA 1375
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1346 AGAAAACAGAAGAGGAGAAAGAATTAGACAGCTTGTGGGAAGATATGAACGTTGCTCTAA 1405
Query 1376 CATTGGAAGGAATGAACTCATCTACTCCTGCTAAAAATGGAGATAAGCTATGTAGCAAAG 1435
|||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct 1406 CATTGGAAGGAATGCACTCATCTACCCCTGATAAAAATGGAGATATGCTATGTAGCAAAG 1465
Query 1436 GGACGCACGACTTTGTCCTGGATGAGGAAATCGGTTTGAAATGCCTCCACTGTTCGTATG 1495
|||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||
Sbjct 1466 GGACACACGACTTTGTCCTGGATGATGAAATCGGTTTGAAATGCGTCCACTGTGCGTATG 1525
Query 1496 TGGCTGTCGAGATCAAAAACATCTCACCAGCTATGGTCAAGTATCGTCCTAGTGTTAATG 1555
||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1526 TGGCTGTCGAGATCAAAGACATCTCACCAGCCATGGACAAGTATCGTCCTAGTGTTAATG 1585
Query 1556 ACAATAAAAAATGTAGTGATAAAAAGGGTGACCCTTTACCTAACAGGCTTGAGTTTGATG 1615
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1586 ACAATAAGAAATGTAGTGATAGAAAGGGTGACCCTTTACCTAACAGGCTTGAGTTTGATG 1645
Query 1616 CTTCAGATCCCAGCAGTCATGACACCCCTTTGGAGAAGACAGAAGGAACTGTCTGGCGAT 1675
||||||||||||||||| || | |||||||||| || | ||||||||||||||||| ||
Sbjct 1646 CTTCAGATCCCAGCAGTTTTGTCGCCCCTTTGGATAATATAGAAGGAACTGTCTGGCAAT 1705
Query 1676 ACGTCCCTGGCATCAAAGATACTTTGTACCCACACCAACAAGAAGGCTTTGAATTTATTT 1735
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1706 ACGTCCCTGGCATCAAAGATACTTTGTACCCACACCAACAAGAAGGGTTTGAATTTATTT 1765
Query 1736 GGAAGAACTTAGCCGGGACAACAAAACTTAATGAGTTGAACAGCGTAGGGGTTAAGGGAA 1795
||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1766 GGAAGAATTTAGCTGGGACAACAAAAATTAATGAGTTGAACAGCGTAGGGGTTAAGGGAA 1825
Query 1796 GTGGCGGATGCATTATTTCGCATAAGGCTGGAACTGGTAAGACACGCTTGACCATCGTTT 1855
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1826 GTGGCGGATGCATTATTTCGCATAAGGCTGGAACTGGTAAGACACGTTTGACCGTCGTTT 1885
Query 1856 TTCTTCAGTCATACTTAGAACGGTTTCCAGATAGTCATCCTATGGTCATAGCTCCTGCAA 1915
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1886 TTCTTCAGTCATACTTAAAACGGTTTCCAAATAGCCATCCTATGGTCATAGCTCCTGCAA 1945
Query 1916 ATCTAATGCGTACGTGGGAAGAAGAATTCAGGAAATGGAACGCAAATATTCCATTTTATA 1975
|||||||||||| |||||||| ||| ||||||||||||||| ||| |||||||||||||
Sbjct 1946 CTCTAATGCGTACTTGGGAAGACGAAGTCAGGAAATGGAACGTAAACATTCCATTTTATA 2005
Query 1976 ATATGAATAGTCCGCAGTTCTCAGGGCATGAGGACGTTGAAGCTGTCTCATGTTTAGAGG 2035
| |||||||||| |||||| |||||| ||||||| | ||||||||||||| |||||||||
Sbjct 2006 ACATGAATAGTCTGCAGTTATCAGGGTATGAGGATGCTGAAGCTGTCTCACGTTTAGAGG 2065
Query 2036 GAGATAGGCATCATAATTCCATCCGTATGGTTAAGCTAGTTTCGTGGTGGAAGCAGAAAA 2095
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 GAAATAGGCATCATAATTCCATCCGTATGGTTAAGCTAGTTTCGTGGTGGAAGCAGAAAA 2125
Query 2096 GCATTCTTGGAGTTAGCTACCCTCTGTATGAGAAGCTCGCAACAAATAAGAACGCTGAAG 2155
||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2126 GCATTCTTGGAATTAGCTACCCTCTGTATGAGAAGCTCGCGGCAAATAAGAACACTGAAG 2185
Query 2156 GAATGCAAGTGTTTAGAAGGATGTTGGTAGAATTGCCGGGGTTGCTGGTCCTTGACGAGG 2215
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 GAATGCAAGTGTTTAGGAGGATGTTGGTAGAATTGCCGGGGTTGCTGGTCCTTGACGAGG 2245
Query 2216 GCCACACCCCGAGAAACCAGAATAGTCTCATTTGGAAAGTGCTTACTGAAGTCAGAACAG 2275
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2246 GCCACACCCCGAGAAACCAGAGTAGTCTCATTTGGAAAGTGCTTACTGAAGTCAGAACAG 2305
Query 2276 AAAAGCGTATCATTCTTTCAGGGACACTGTTCCAGAATAATTTCAAGGAGCTCTCTAACG 2335
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2306 AAAAGCGTATCTTTCTTTCAGGGACACTGTTCCAGAATAATTTCAAGGAACTTTCTAACG 2365
Query 2336 TCTTATGCCTGGCAAGACCAGCTTG-TAAAGATACGATTTCGTCGAGGCTACATGAACTT 2394
|||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||
Sbjct 2366 TCTTATGCCTGGCAAGACCAGC-TGATAAAGATACGATTTCTTCGAGGATACATGAACTT 2424
Query 2395 ATCAAGTGCAGCCAAGAAGGAGAACACGGAAGGGTGAATGAAGAAAATAGAATTGTGGAT 2454
| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2425 AGCAAGTGTAGCCAAGAAGGAGAACACGGAAGGGTGAATGAGGAAAACAGAATTGTGGAT 2484
Query 2455 CTTAAGGCTGTGATTGCCCCTTTTGTGCATGTCCACGAAGGAGA-CATTCTTCAAGAAAG 2513
||||||||| ||||||| | ||||||||||||||| |||||| | ||| |||||||||||
Sbjct 2485 CTTAAGGCTATGATTGCTCATTTTGTGCATGTCCATGAAGGA-ACCATCCTTCAAGAAAG 2543
Query 2514 CCTTCTAGGTCTAAGAGACTGTGTTCTGGTGTTGAACCCGCCTTTTCAACAGAAGAAAAT 2573
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2544 CCTTCCAGGTCTAAGAGACTGTGTTGTCGTGTTGAACCCGCCTTTTCAACAGAAGAAAAT 2603
Query 2574 TCTGGACAGAATTGACACTTCTCAAAACACATTTGAATTTGAGCACAAGCTTTCAGCTGT 2633
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2604 TCTTGACAGAATTGACACTTCTCAAAACACATTTGAATTTGAGCACAAGCTTTCAGCTGT 2663
Query 2634 TTCAGTACACCCATCTCTGTATTTGTGCTGTAATCCGACGAAGAAGGAAAACTTGGTTAT 2693
|||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 2664 TTCAGTACACCCATCTCTGTATTTGTGCTGCAATCCGACCAAGAAGGAAGACTTGGTTAT 2723
Query 2694 TGGGCCAGCAACATTAGAAACTCTGAAGAAGCTTAGACTTAAGTACAAGGAAGGTGTGAA 2753
||||||||||||||||| |||||| |||| |||||||||||| ||| |||||||||||||
Sbjct 2724 TGGGCCAGCAACATTAGGAACTCTCAAGAGGCTTAGACTTAAATACGAGGAAGGTGTGAA 2783
Query 2754 AACAAAGTTCCTTATCGACTTCATCCGCATCAGTGGAACCATGAAAGAGAAAGTGTTGGT 2813
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2784 AACAAAGTTCCTTATCGACTTCATCCGCATCAGTGGAACCGTGAAAGAGAAAGTGTTGGT 2843
Query 2814 GTATAGCCAATACATTGACACTCTAAAGCTGATCATGGAGCAGCTCAGTT-TAGTAT-TT 2871
|||||||||||| ||||||||||| |||||||||||||||||||||| || || || |
Sbjct 2844 GTATAGCCAATATATTGACACTCTGAAGCTGATCATGGAGCAGCTCA-TTGCAGAATGTG 2902
Query 2872 AGCTGGAAAGAAGGGGAAGAAATTCTCTTTATGCATGGTAAAGTTGAACAAAGAGACAGG 2931
| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 2903 A-CTGGACTGAAGGGGAACAAATTCTCTTGATGCATGGTAAAGTTGAACAAAGAGACAGG 2961
Query 2932 CAGCATCTGATCGACAACTTCAACAAACCAGACAGTGGATCTAAAGTTCTACTGGCATCA 2991
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2962 CAGCATATGATCGACAACTTCAACAAACCAGACAGTGGATCTAAAGTTCTACTGGCATCA 3021
Query 2992 ACAAAAGCATGTTCCGAGGGTATCAGTCTTGTTGGCGCTTCAAGAGTTGTGATTCTTGAT 3051
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3022 ACAAAAGCATGTTCTGAGGGTATCAGTCTTGTTGGCGCTTCAAGAGTTGTGATTCTTGAT 3081
Query 3052 GTTGTTTGGAACCCTTCTGTTGAAAGCCAAGCCATAAGTCGGGCTTTCAGACTTGGTCAA 3111
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 3082 GTTGTTTGGAACCCTTCTGTTGAAAGCCAAGCCATAAGTCGAGCTTTCAGAATTGGTCAA 3141
Query 3112 AAGCGTGCTGTGTTCATTTACCATCTCATGGTGAAAGACACATCTGAGTGGAACAAGTAC 3171
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3142 AAGCGTGCTGTGTTCATTTACCATCTCATGGTCAAAGACACATCTGAGTGGAACAAGTAC 3201
Query 3172 TGTAAGCAAAGTGAGAAACATCGCATATCCGAACTGGTCTTCTCTTCTACCAATGAGAAG 3231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3202 TGTAAGCAAAGTGAGAAACATCGCATATCCGAACTGGTCTTCTCTTCTACCAATGAGAAG 3261
Query 3232 GATAAGCCGATCAACAACGAAGTTGATTCCGAAGATAGAATCCTCGACGAGATGGTTCGA 3291
|| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 3262 GACAAGCCGATTAACAACGAAGTTGTTTCCAAAGATAGAATCCTCGACGAGATGGTTCGG 3321
Query 3292 CACGAGAAGCTGAAACACATCTTTGAGAAGATACTTTATCACCCAAAAGAA-TCTGACAT 3350
|||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 3322 CACGAGAAGCTGAAACACATATTTGAGAAGATACTTTATCACCCAAA-GAAATCTGACAT 3380
Query 3351 GTTTACCAGCTTCTTCTGA 3369
| ||||||||||||||||
Sbjct 3381 GAATACCAGCTTCTTCTGA 3399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 167657923506
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5