BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342616
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24530.1 | Symbols: | AAA-type ATPase family protein / anky... 1757 0.0
> AT3G24530.1 | Symbols: | AAA-type ATPase family protein / ankyrin
repeat family protein | chr3:8945425-8947938 REVERSE LENGTH=1851
Length=1851
Score = 1757 bits (951), Expect = 0.0
Identities = 1049/1097 (96%), Gaps = 3/1097 (0%)
Strand=Plus/Plus
Query 400 CAG-AACGGTATGACACCATTGCACCTTGCGGTATGGTACTCAATTACTGCGAAAGACAT 458
||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 503 CAGCAATGGTATGACACCGTTGCATCTTGCGGTATGGTACTCAATTACTGCTAAAGAGAT 562
Query 459 CTCAACTGTTAAGACACTGCTTGATCATAACGCAGATTGCAGCGCAAAAGATAATGAAGG 518
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 563 CTCGACTGTTAAGACACTGCTTGATCATAACGCAGATTGCAGTGCAAAAGATAATGAAGG 622
Query 519 GATGACTCCTTTGGACCATCTGCCTCAAGGACAAGGCAGTGAGAAGTTACGGGAATTGTT 578
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 623 GATGACTCCTTTGGACCATCTGCCTCAAGGGCAAGGCAGTGAGAAGTTACGGGAATTACT 682
Query 579 GCGCTGGTTTCTCCAAGAACAGAGGAAAAGAAGCGCGCTTGAGCAATGCGGTAAGACAAA 638
||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 683 GCGGTGGTTTCTCCAAGAGCAGAGGAAAAGAAGTGCGCTTGAGCAATGTGGTAAGACAAA 742
Query 639 AGCCAAGATGGAACTACTTGAGGACGAGTTGTCAAATATTGTTGGACTAAGTGAGCTGAA 698
|||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 743 AGCCAAGATGGAACTACTTGAGGATGAGTTATCAAATATTGTTGGATTAAGTGAGCTGAA 802
Query 699 GACACAATTGAGGAAATGGGCAAAAGGAATGCTTTTAGATGAAAGGCGAAGGGCTCTTGG 758
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 803 GACACAACTGAGGAAATGGGCGAAAGGAATGCTTTTAGATGAAAGGCGAAGGGCTCTTGG 862
Query 759 GCTGAACATTGGAACCCGAAGACCTCCGCATATGGCATTTCTTGGAAACCCTGGAACAGG 818
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GCTAAATATTGGAACCCGAAGACCTCCGCATATGGCATTTCTTGGAAACCCTGGAACAGG 922
Query 819 TAAAACCATGGTAGCTCGAGTTCTTGGGAAGTTGCTTAACACGGTTGGAATTTTACCAAC 878
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 923 TAAAACCATGGTAGCTCGAGTTCTCGGGAAGCTGCTTAACACGGTTGGAATTTTACCAAC 982
Query 879 TGATAAGGCAACAGAAGTACAGCGTACAGACTTGGTTGGTGAGTTTGTTGGCCATACAGG 938
|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 983 TGATAAGGTAACAGAAGTACAGCGTACAGATTTGGTGGGTGAGTTTGTTGGCCATACAGG 1042
Query 939 ACCAAAGACCAGGAGAAAGATCCAAGAAGCTGAGGGAGGAATTCTGTTTGTCGATGAAGC 998
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1043 ACCAAAGACCAGGAGAAAGATCCAAGAAGCTGAGGGAGGAATTCTGTTTGTGGATGAAGC 1102
Query 999 ATACAGATTGATCCCGATGCAAAAGGCGGACGACAAGGACTACGGTCTAGAAGCTCTGGA 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 ATACAGATTGATCCCGATGCAAAAGGCGGACGACAAGGACTACGGTCTAGAAGCTCTGGA 1162
Query 1059 AGAAATCATGTCGGTCATGGACACAGGGAAAATCGTGGTGATATTCGCGGGATACAGTGA 1118
|||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| ||
Sbjct 1163 AGAAATCATGTCAGTCATGGACACAGGGAAAATTGTGGTGATATTTGCAGGATACAGCGA 1222
Query 1119 GCCCATGAAGCGTGTGATCGCATCAAACGAAGGGTTTTGCAGAAGGGTCACAAAGTTTTT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GCCCATGAAGCGTGTGATCGCATCAAACGAAGGGTTTTGCAGAAGGGTCACAAAGTTTTT 1282
Query 1179 CAATTTCAGCGACTTCAGTGCCAAGGAACTAGCGCAGATACTACACATCAAGATGAACAA 1238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1283 CAATTTCAGCGACTTCAGTGCCAAGGAACTGGCGCAGATACTACACATCAAGATGAACAA 1342
Query 1239 CCAAGGAGAGGACACTCTGTTCTACGGCTTCAGATTGCATGAGTCTTGCACTCTGCAGGA 1298
|||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||
Sbjct 1343 CCAAGGAGAGGACACTCTGTTCTATGGTTTCAGATTGCATGAGTCCTGCACTTTGCAGGA 1402
Query 1299 GATAGCGTCACTGATAGAGGCAGAAACAACCGAGAAGCAGAG-AAAGGAGATGAACGGAG 1357
|||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||||
Sbjct 1403 GATAGCGTCACTGATAGAGGCAGAAACAACGGAAAAGCAGAGGAAAG-AGATGAATGGAG 1461
Query 1358 GATTGGTGGACACGTTACTTGTTAACGCGAGGGAGAATCTTGATCTCCGACTTAGCTTTG 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 GATTGGTGGACACGTTACTTGTTAACGCGAGGGAGAATCTTGATCTCCGACTTAGCTTTG 1521
Query 1418 AATGTGTTGACACTGAAGAGATTTGTACAATCAAGTTGGAAGACCTAGATGCTGGGCTTC 1477
| |||||||||||||||||||||||||||||||||||||| || ||||| || |||||||
Sbjct 1522 AGTGTGTTGACACTGAAGAGATTTGTACAATCAAGTTGGAGGATCTAGAGGCCGGGCTTC 1581
Query 1478 GAGTTTTCTCGCAGTGA 1494
|||||||||||||||||
Sbjct 1582 GAGTTTTCTCGCAGTGA 1598
Score = 577 bits (312), Expect = 1e-163
Identities = 341/355 (96%), Gaps = 2/355 (1%)
Strand=Plus/Plus
Query 1 ATGAACCGACAAAACGGTGGAGGACAGCGGCTGAGATCCGCTAGACCCACCACAATTCAC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 153 ATGAACCGACAAAACGGTGGAGGGCAGCGGCTGAGATCCGCTAGACCCACCACAATTCAC 212
Query 61 GATTGTGCTCTCTCCGGTGATCTTATTGCTTTGCAGAGACTTCTTAAAGACAATCCTTCT 120
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 213 GATTGTGCTCTCTCCGGCGATCTTATTGCTTTACAGAGACTTCTTAAAGACAATCCTTCT 272
Query 121 CTTCTCAATGAACGCAATCCCGTCATGTATCACACGCCTCTTCATGTTTCTGCTGGTAAT 180
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 273 CTTCTCAATGAACGCAATCCCGTCATGTATCATACGCCACTTCATGTTTCTGCTGGTAAT 332
Query 181 GGTAATGTTGATATAGTTAAGTATCTTCTTGCTTGGACTGGATCTGAGAAAGTTGAGTTA 240
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 333 GGTAATGTTGATATTGTTAAGTATCTTCTCGCTTGGACTGGATCTGATAAAGTTGAGTTA 392
Query 241 GAAGCAATGAATACTTATGGTGAGACTCCATTGCATATGGCAGCAAAGAACGGTTGCAAC 300
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 393 GAAGCAATGAATACTTATGGTGAGACTCCATTGCATATGGCAGCTAAGAACGGTTGTAAT 452
Query 301 GAAGCTGCGAAGCTACTCCTTGAGCA-TGGTGCTTTTATCGAAGCTAAAGCCAGC 354
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 453 GAAGCTGCAAAGCTACTCCTTGAG-AGTGGTGCTTTTATCGAAGCTAAAGCCAGC 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5