BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342622

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-...   667    0.0  


> AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr3:8715236-8718211 REVERSE 
LENGTH=1729
Length=1729

 Score =  667 bits (361),  Expect = 0.0
 Identities = 396/412 (96%), Gaps = 6/412 (1%)
 Strand=Plus/Plus

Query  128  ATCAACTGTCTCCTTCCGGATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATG  187
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  338  ATCAACTCTCTCCTTCCGGATTTGGAGCAACACCTTTTGATAAAATGAACTTCTCTGATG  397

Query  188  TGATGCAGTTTGTGGACTTCGGTCCGAAACTGGCGTTGAACCAGACCAGAAACCAAGACG  247
            |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct  398  TGATGCAGTTTGCGGACTTCGGTTCGAAACTTGCGTTGAACCAGACCAGAAACCAAGACG  457

Query  248  ATCAAGAAACCGGGATTGACCCGGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAGA  307
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  458  ATCAAGAAACCGGGATTGACCCCGTTTATTTCTTGAAGTTCCCTGTCTTGAACGACAAAA  517

Query  308  TAGAGGACCATAACCAAACCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAG  367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  TAGAGGACCATAACCAAACCCAACATCTCATGCCTTCTCATCAGACGTCTCAAGAAGGAG  577

Query  368  GTGAGTGTGGAGGAAACATAGGCAACGTGTTTCTTGAAGAAAAAGAGGATCAAGACGA--  425
            ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  
Sbjct  578  GTGAGTGTGGAGGAAACATAGGCAATGTGTTTCTTGAAGAAAAAGAAGATCAAGACGATG  637

Query  426  -C---GACAACAACTCCGTGCAACTCCGTTTTATTGGAGGAGAAGAAGAAGATAGGGAGA  481
             |   |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  638  ACAACGACAACAACTCCGTGCAACTACGTTTTATTGGAGGAGAAGAAGAAGATAGGGAGA  697

Query  482  ACAAGAATGTTACGACAAAGGAGGTGAAGAGCAAGAGGAAGAGAGCTAGAAC  533
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  698  ACAAGAATGTTACGAAAAAGGAGGTGAAGAGCAAGAGGAAGAGAGCTAGAAC  749



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5