BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342623
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 1303 0.0
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 555 5e-157
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 357 2e-97
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 333 3e-90
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 279 3e-74
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 143 5e-33
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 143 5e-33
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 1303 bits (705), Expect = 0.0
Identities = 1006/1146 (88%), Gaps = 41/1146 (4%)
Strand=Plus/Plus
Query 1 ATGACTAAGATATCTAATCTTCCTAAGGATTTGGTGGAGGAGGTGCTCTCTAGGGTTCCG 60
||||| ||||| |||||||| ||||| ||||||| ||| |||||||||||||||||| ||
Sbjct 1 ATGACGAAGATGTCTAATCTCCCTAATGATTTGGCGGAAGAGGTGCTCTCTAGGGTTTCG 60
Query 61 TTAACATCTTTAAGAAATATCCGA-TTAACTTGCAAAAAGTGGAACATTTTATCCAAAGG 119
||||||||| | ||||| ||||| || ||||| ||| | ||||| | |||||| |||||
Sbjct 61 TTAACATCTCTGAGAAACGTCCGACTT-ACTTGTAAAGATTGGAATACTTTATCTAAAGG 119
Query 120 TGAGAGCTTTGCAAAGAAGCACCTTGGTGATCAAGCAAAAGAAGCAGC-AACGGAAAGAG 178
|||||||||||||||||| ||||||||| ||||||||| || |||||| || ||||| ||
Sbjct 120 TGAGAGCTTTGCAAAGAATCACCTTGGTTATCAAGCAATAGTAGCAGCGAA-GGAAAAAG 178
Query 179 AGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGAGTCAATC-TTCAC 237
|||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 179 AGTTTATGATGGTCCTGATGATGGATTTTAGGGTTTATTTGATTCGAGTCAA-CGTTCAC 237
Query 238 AATGACGTTGAGTCATGTATAAAGCCTGAAGGTGAACTTATTTGCTTAGACGAAGAAGAC 297
|||||| ||||||| ||||| |||||||||||||| |||||| |||| | ||| |||| |
Sbjct 238 AATGACATTGAGTCGTGTATTAAGCCTGAAGGTGAGCTTATTAGCTTGGGCGATGAAGTC 297
Query 298 GATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATTATGGAAGATAAC--- 354
|||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||
Sbjct 298 GATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGCTATGCATCACGGAAGATAACGAA 357
Query 355 ----A--CT-AGGATTGTGGTTTGGAACCCGTATTGGGGGCATAC-CTGGTGGATCGTGC 406
| || ||| | || |||||||||||||||||||||| || | ||||||||| |
Sbjct 358 GATAACGCTAAGG-TCGTTCTTTGGAACCCGTATTGGGGGCAAACAC-GGTGGATCGAGT 415
Query 407 CTACACATAATTTCCACAAATTGGACGTTTATACGTATGCTCTTGGATACAAGCAGAGCA 466
||||| |||||||||||||||||||| | |||||||||||||| ||||||||| ||||||
Sbjct 416 CTACAAATAATTTCCACAAATTGGACATGTATACGTATGCTCTCGGATACAAGAAGAGCA 475
Query 467 GCAAATCATGTCGCAGCTACAAAATCTTGAGATTTATTGATTTTTCTCGCACTTGTTTTG 526
|||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 476 GCAAATCAAGCCGCAGCTACAAAATCTTGAGATTTATTGATTTTTCTCCCACTTGTTCTG 535
Query 527 AATTCAAAATCTACAATATAAACTCTGATTCATGGAAGGTTCTTGATGTCTCTCCAGATT 586
| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 536 AGTTCAAAATCTACAATATCAACTCTGATTCATGGAAGGTTCTTGATGTGTCTCCAGACT 595
Query 587 GGAAGATAGATTCTTATAGTCGTGGCGTGTCTCTCAAGGGAAATACGTACTGGTTTGCTA 646
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||
Sbjct 596 GGAAGATAGATTCTTATATTCGTGGCGTGTCTCTCAAGGGAAATACATACTGGATTGCTA 655
Query 647 GAGAGAGGCAAGGA-A--G-CAGTACTTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGA 702
|||||||||| ||| | | || |||||||||||||||||||||||||||||||||||||
Sbjct 656 GAGAGAGGCACGGATACGGCCA-TACTTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGA 714
Query 703 TTTAGATCACGTTTTCCTCTGCCGATTCAGCCGTATATTTTAGATACCGTGAGTCTATCT 762
||||| || ||||| |||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 715 TTTAGGTCGCGTTTACCTCTGCCGAGTCAGCCGTGTGTTTTAGATACCGTGAGTCTATCT 774
Query 763 AGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTCAGCGCTCAAGATTATCAGAGATGGAG 822
|||||||||||||||||||| || |||||||||||| ||||||| | | || |||||
Sbjct 775 AGTGTTAGAGAAGAGCAGCTTGCTGTTTTATTTCAGTGCTCAAG-T-A-CAT---TGGAG 828
Query 823 ATGGAGATCTGGATAACCACGAAACTTGAGCCCAACGCGGTGTCGTGGAACAGCAAGGTG 882
||| |||||||| |||| || ||| |||||||||| ||||||| ||||||||||||||||
Sbjct 829 ATGCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGGTGTTGTGGAACAGCAAGGTG 888
Query 883 TTCTTAGCAATGGATATTGG-C-C--TTCAA-TTTCAGTTTCAAGTTAGAGCTGCAAGTT 937
|||||||| ||||||| | | | || || ||||||||||||||||||||| | ||||
Sbjct 889 TTCTTAGCTGTGGATAT-GCACTCACTT-AAGTTTCAGTTTCAAGTTAGAGCTTCGAGTT 946
Query 938 TCTTTATCGATGAGGAGAAGAAAGTTGTTGTGGTTTTTGATAAAGAGAAAAAAT-ATTTA 996
|||||||||| |||||||||| ||||||||| |||||||||||||| |||| | |||||
Sbjct 947 TCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGATAAAGA-AAAACGTTATTTA 1005
Query 997 GTGTCCACTCACAACATAGCTTACATCTTTGGAGAGGATGGAACCTTGGAACAAGTGGAT 1056
| |||| ||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 1006 GCGTCCTCTCGCAACAAAGCTTACATCGTTGGAGTGGATGGAACCTGGGAACAAGTGGAC 1065
Query 1057 CTTGGATTATCTGCAGACAAATTTTGTT-ATCCACTTGTGTGCTGTTATGTTCCAAGTTT 1115
|||||| | |||| |||||||||| ||| | ||||||||||||| |||||||||||||||
Sbjct 1066 CTTGGAATGTCTGTAGACAAATTT-GTTTACCCACTTGTGTGCTCTTATGTTCCAAGTTT 1124
Query 1116 AGTGCA 1121
||||||
Sbjct 1125 AGTGCA 1130
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 555 bits (300), Expect = 5e-157
Identities = 902/1176 (77%), Gaps = 107/1176 (9%)
Strand=Plus/Plus
Query 1 ATGACTAAGATATCTAATCTTCCTAA-GGATTTGGTGGAGGAGGTGCTCTCTAGGGTTCC 59
|||||||||||||| |||||||| || |||||||| ||| |||||||||| ||| ||||
Sbjct 42 ATGACTAAGATATCCAATCTTCC-AAGGGATTTGGCGGAAGAGGTGCTCTGTAGAATTCC 100
Query 60 GTTAACATCTTTAAGAAATATCCGAT-TAACTTGCAAAAAGTGGAACATTTTATCCAAAG 118
||| || ||| | |||| | | ||| | ||||||||| |||||||| |||||||||
Sbjct 101 GTTGACGTCTCTGAGAACTGTTTGATCT-TCTTGCAAAACGTGGAACACGTTATCCAAAT 159
Query 119 GTGAGAGCTTTGCAAAGAAGCACCTTGGTGATCAAGCAAAAGAAGCAGCAACGGAAAGAG 178
||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||
Sbjct 160 ATGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGGAAAGAG 219
Query 179 AGTTTATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGAGTCAATCTTCACA 238
|||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |
Sbjct 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAA 279
Query 239 ATGACGTTG-A--GTCATGTATAAAGCCTGAAGGTGAACTTATTTGCTTAGACGAAGAAG 295
| | |||| | ||||||||||| | ||||| | |||||||| | |||| ||| ||||
Sbjct 280 ACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGCGATGAAG 339
Query 296 ACGATGTATCTCAAGTCTTTCACTGCGACGGTTTATTG---TT-AT--GCATTATGGAAG 349
||| |||||||||||||||||||| ||||||||||| || || |||| | |||
Sbjct 340 TTGATATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAG 399
Query 350 ATAACACTAGGATTGTGGTTTGGAACCCG--T-ATTGGGGGCATACCTGGT-GGATCGTG 405
| || |||||| | ||||||||||||||| | ||||||| |||||| || |||||
Sbjct 400 ACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACC-CGTACGATCGAA 458
Query 406 CCTACACATAATTTCCACAAATT--GGACGT-T--TATACGTATGCTCTTGGATACAAGC 460
|| |||||||| | ||||| ||| | || | |||| ||||||||| |||||||| |
Sbjct 459 CCCACACATAACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAA-C 517
Query 461 -AGAGC-AGCAAATCATGTCGCAGCTACAAAATCTTGAGATTTATTGATTTTTCTCGCAC 518
||||| |||| | | || | | ||||||||||||| ||| || | || || | |
Sbjct 518 AAGAGCTAGCAGCT-A-ATC-C--C-ACAAAATCTTGAGGTTTGTT-A-CTTACT-GGA- 567
Query 519 T---TGTT-T---TGAATTCAAAATCTACAATATAAACTCTGATTCATGGAAGGTTCTTG 571
| ||| | ||| |||| ||||||| || | |||||||||||||||| ||||||||
Sbjct 568 TGAGGGTTATGGATGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTG 627
Query 572 ATGTCTCTCCAGATTGGAAGAT-AGATTCTTAT-AGTCGTGGCGTGTCTCTCAAGGGAAA 629
||||| |||||||||||| ||| || || ||| | | |||||||||||||||||||||
Sbjct 628 ATGTCACTCCAGATTGGACGATAAG-TT-ATATGAACCTTGGCGTGTCTCTCAAGGGAAA 685
Query 630 TACGTACTGGTTTGCTA--GAGAG--A---GGCAA-GGAAGCAGTACTTTCTTAGTCTGT 681
| | ||||||||||||| ||||| | | || || | | || |||||||||||||
Sbjct 686 TGCATACTGGTTTGCTACTGAGAGATATTCCGAAACAGACG-ATTA-TTTCTTAGTCTGT 743
Query 682 TTTGATTTCACAAGAGAGAGATTTAGATCACGTTTT-CCTCTGCCGATTCAG-CCG-TAT 738
||||||||||||||||||| |||| | | | |||| |||| ||| || | | ||
Sbjct 744 TTTGATTTCACAAGAGAGACATTTGGGCCTC-TTTTGACTCTTCCGTTTGTGTTTGTTAA 802
Query 739 AT-TTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTCA 797
|| | |||| || || |||||| |||||||||||||||||| |||||||||| |||
Sbjct 803 ATCTGAAGATGTTATGTGTGTATCTAATGTTAGAGAAGAGCAGCTTGCGGTTTTATATCA 862
Query 798 G-CGCTCAAGATTATCAGAGATGGAGATGGAGATCTGGATAAC--C-ACGAAACTTGAGC 853
| || | || || | | | |||||||||||||||| || | ||| | ||||||
Sbjct 863 GCCG-T-GGGA-TA--A-ATA-AAAGATGGAGATCTGGATTACGTCTACG--A-TTGAGC 912
Query 854 CCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTAGCAATG-G-ATA-------T--T-G 901
||||||||||||||||||||||||||||||||||| || || | ||| | | |
Sbjct 913 CCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTG 972
Query 902 GCCTTCAATTTCAGTTTCAAGTTAGAGCTGCAAGTTTCTTTATCGATGAGGAGAAGAAAG 961
||| || ||||||||| ||| | | | | ||||||| || || |||||||||||||
Sbjct 973 GCCCTCCGTTTCAGTTTT--GTTTGGG--G-A-GTTTCTTCATTGACGAGGAGAAGAAAG 1026
Query 962 TTGTTGTGGTTTTTGATAAAGAGAAAAAATATTTAGTGTCCAC-T--C--ACAACATAGC 1016
| | |||||||||||||||||| | ||| || || | | || | | ||| ||| |
Sbjct 1027 TCGCTGTGGTTTTTGATAAAGACTACAAAGATA-AGCG-CAACATAGCTTACATCATTGG 1084
Query 1017 TTACATCTTTGGAGAGGATGGAACCTTGGAACAAGTGGATCTTGGATTATCTGCAGACA- 1075
| | |||||||| |||||| |||| || ||| |||||| ||| ||| || ||
Sbjct 1085 --AGA-CTTTGGAGTCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATCAGCCTACGC 1140
Query 1076 AATTTTGTTATCCACTTGTGTGCTGTTATGTTCCAA 1111
||| | |||| |||||| |||||| |||||||||||
Sbjct 1141 AATGT-GTTACCCACTTATGTGCTCTTATGTTCCAA 1175
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 357 bits (193), Expect = 2e-97
Identities = 360/439 (82%), Gaps = 18/439 (4%)
Strand=Plus/Plus
Query 32 TGGTGGAGGAGGTGCTCTCTAGGGTTCCGTTAACATCTTTAAGAAATA-TCCGATTAACT 90
||| |||||||||||| |||||||||||| | |||||| |||| || | ||||||| |||
Sbjct 2 TGGCGGAGGAGGTGCTTTCTAGGGTTCCGATGACATCTCTAAG-AAGACTCCGATTTACT 60
Query 91 TGCAAAAAGTGGAACATTTTATCCAAAGGTGA-GAGCTTTGCAAAGAAGCACCTTG-GTG 148
|||||||||||||||| |||||| | | || | ||||||||||||||||||||||| ||
Sbjct 61 TGCAAAAAGTGGAACACTTTATCTAGATGT-AGGAGCTTTGCAAAGAAGCACCTTGTTTG 119
Query 149 ATCAAGCAAAAGAAGCAGCAACGGAAAGAGAGTTTATGATGGTCATGATGATGGATTTTA 208
||||||||||| ||| |||| | ||||||||| || | |||||||||||||||||||||
Sbjct 120 -TCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTATAAGGTGGTCATGATGATGGATTTTA 178
Query 209 GGGTTTATTTGATGCG-AGTCAATCTTCACAATGACGTTGAGTCATGTATAAAGCCTGAA 267
|||||||||||||||| | | |||||||| || ||||||| | |||||||||| ||||
Sbjct 179 GGGTTTATTTGATGCGCA-TAAATCTTCAGAACAACGTTGAATTGTGTATAAAGCGTGAA 237
Query 268 GGTGAACTTATTTGCTTAGACGAAGAAGA-CGA-TGTA--TC--TCAAGTCTTTCACTGC 321
|||||||| ||| | |||| ||| | | | || || ||| ||||||||||||
Sbjct 238 CGTGAACTTCTTTTCCCCGACGCTTCAGATCAAATTTACGTCCGTCACGTCTTTCACTGC 297
Query 322 GACGGTTTATTGTTATGCATTATGGAAGATAACACTAGGATTGTGGTTTGGAACCCGTAT 381
|||||||||||||||||||| ||| |||| ||| ||||| |||||||||| |||||||||
Sbjct 298 GACGGTTTATTGTTATGCATCATGAAAGACAACCCTAGGCTTGTGGTTTGTAACCCGTAT 357
Query 382 TGGGGGCATACCTGGTGGATCGTGCCTACACATAATTTCCACA-A-ATTGGACGTTTATA 439
| || || ||| ||||||||| | ||||| ||||| || || | ||| || | |||
Sbjct 358 AGTGGACAAACCCGGTGGATCGAGACTACAAATAAT--CCTCAGAGATTAGATGCATATT 415
Query 440 CGTATGCTCTTGGATACAA 458
|||||||||| ||||||||
Sbjct 416 CGTATGCTCTCGGATACAA 434
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 333 bits (180), Expect = 3e-90
Identities = 703/937 (75%), Gaps = 110/937 (12%)
Strand=Plus/Plus
Query 250 TCATGTATAAAGCCTGAAGGTGAACTTATTTGCTTA---GACGAAGAAGACGATGTATCT 306
||||||||||| | ||||| | || ||||| ||||| ||||||| || ||| |||||
Sbjct 91 TCATGTATAAAACGTGAAGCTAAAGTTATTAGCTTAGGCGACGAAGTTGATGATATATCT 150
Query 307 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCAT-----T-ATGGAAGATAACACTAGG 360
||||||||||||||||||||||||||||||||||| | | ||| || ||||||
Sbjct 151 CAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGACTAGG 210
Query 361 ATTGTGGTTTGGAACCCGTATTGGGGGCATACCTGGTGGATCGTGCCTACACATAATTTC 420
| |||||||||||||||||||||||||||||| ||| |||| ||| |||||| | |||
Sbjct 211 CTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAGCCCACACATCAGTTC 270
Query 421 CACAAATTGGAC-GTTTATACGTATGCTCTTGGATACAAGCA-GAGCAGCAAATCATGTC 478
||||||| ||| | | || | |||||||| |||||| | || |||||||||||| |
Sbjct 271 AACAAATTCGACAGCT-ATTCTTATGCTCTCGGATACGA-CAAGAGCAGCAAATC----C 324
Query 479 GCAGCTACAAAATCTTGAGATTTATTGA-TT-TTTCTCG-CACT-TGTTT--TGAATTCA 532
|| | | ||| ||||||| | |||| | || ||| | | | | ||| ||| ||||
Sbjct 325 -CA-C-A-AAA-TCTTGAGGTGTATT-ACTTGTTTGA-GACCCCAT-TTTCATGAGTTCA 376
Query 533 AAATCTACAATATAAACTCTGATTCATGGAAGGTTCTTGATGTCTCTCCAGATTGGAAGA 592
||||||| || | |||||| ||||||||| |||| || ||||| ||||||| ||| | |
Sbjct 377 TAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTCATGTCACTCCAGACTGGCA-A 435
Query 593 T-AG--ATTCTTATAGTCGTGGCGTGTCTCTCAAGGGAAATACGTACTGGTTTGCT-A-G 647
| || | | ||| | | ||||||||||||||||||||||| | | |||| ||||| | |
Sbjct 436 TTAGGGACTATTA-A-TAGTGGCGTGTCTCTCAAGGGAAATGCCTTCTGGGTTGCTGAAG 493
Query 648 AGA-G-AG---G---CAAG-GAAGCA---GTAC--TTT--CTTAGTCTGTTTTGATTTCA 691
||| | | | |||| ||| || | | ||| |||| ||| |||||||||||
Sbjct 494 AGAAGTATTACGAAACAAGTGAAACAAACGAAGAGTTTTTCTTACTCTCTTTTGATTTCA 553
Query 692 CAAGAGAGAGATTTAGATCACGTTTT-CCTCTGCCGATTCAGCC-GTAT-ATTTT-A-GA 746
||||||||| |||| || ||| |||| ||||| ||| ||||| || | | | | | ||
Sbjct 554 CAAGAGAGACATTTGGACCAC-TTTTGCCTCTTCCGTTTCAGTTTGT-TGAATCTGAAGA 611
Query 747 TACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTCAGC-GCTCAA 805
| | ||||| |||| | ||||||||| |||||||| || ||||||| ||||| | |
Sbjct 612 TGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGCTGTTTTATATCAGCCG-TGG- 669
Query 806 GATTATCAG-AGATGGAGATGGAGATCTGGATAACCACGAA-ACTTGAGCCCAACGCGGT 863
||| | || | ||| | ||||||||||| | || | || | ||||||||||||||||
Sbjct 670 GAT-A-CATTA-ATG-A--TGGAGATCTGGGTCACGTCTAAGA-TTGAGCCCAACGCGGT 722
Query 864 GTCGTGGAACAGCAAGGTGTTCTTAGCAATG-G-ATA-------T--T-GGCCTTCAATT 911
||| ||||||||||||||||||||| || || | ||| | | |||| ||| ||
Sbjct 723 GTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGCCCTCAGTT 782
Query 912 TCAGTTTCAAGTTAGAGCTGCAAGTTTCTTTATCGATGAGGAGAAGAAAGTTGTTGTGGT 971
||||||| ||| | | | | ||||||| || || |||||||||||||| | ||| ||
Sbjct 783 TCAGTTTT--GTTTGGG--G-A-GTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTGT 836
Query 972 TTTTGATAAAGAGAAA-A-AATATTTAGTGTCCACTCACAACATAGCTTACATCTTTGGA 1029
||||||||||| | | | |||| || | | | ||| ||||||||||| |||||
Sbjct 837 TTTTGATAAAG-GCTACAGAATAC--AGCG-C---T-ACA---TAGCTTACATCATTGGA 885
Query 1030 GAGGATGGAACCTTGGAACAAGTGGATCTTGGATTATCTGCAGACA-AATTTTGTTATCC 1088
| ||||||| || || || |||||||||||||| ||| ||||| || | |||| ||
Sbjct 886 GTGGATGGATCCATGAAAGAAGTGGATCTTGGAGAATC---AGACAGAAGGT-GTTACCC 941
Query 1089 ACTTGTGTGCTGTTATGTTCCAAGTTTAGTGCAGCTT 1125
| ||||||| | ||||||||||||| ||||||| |||
Sbjct 942 AATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTT 978
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 279 bits (151), Expect = 3e-74
Identities = 705/954 (74%), Gaps = 112/954 (12%)
Strand=Plus/Plus
Query 242 ACGTTGAGTCATGTATAAAGCCTGAAGGTGAACTTATTTGCTTAGACG----A-A-GAAG 295
||||||| |||||||| ||| ||||| | |||||||| || |||||| | | ||||
Sbjct 294 ACGTTGAATCATGTATCGAGCATGAAGCTAAACTTATTAGCCTAGACGATTCATATGAAG 353
Query 296 ACGATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATTATGGAAGATAACA 355
| | |||||| |||| ||||||||||||||||||||||||||||||| |||| | |
Sbjct 354 TCCAAGTATCTAAAGTTTTTCACTGCGACGGTTTATTGTTATGCATTACAAAAGACCATA 413
Query 356 CTAGGATTGTGGTTTGGAACCCGTATTGGGGGCATACCTGGTGGATCGTGCCTACACATA 415
||| | | | |||||||||||||||||||| || ||| |||||||| || | |||||
Sbjct 414 CTAAGCTCCTAGTTTGGAACCCGTATTGGGGTCAAACCAAGTGGATCGAACCCATACATA 473
Query 416 ATTTCC-ACAAATTGGACGTT-TATACGTATGCTCTTGGATACAAGCAGAGCAGCAAATC 473
|| | || || |||| || ||| ||||||| |||||||| | || || |||| |
Sbjct 474 CTT-CATACCAACTGGAA-TTGTATTCGTATGCGATTGGATACGA-CA-AG-AGCAG--C 526
Query 474 ATGTCGCAGCTACAAAATCTTGAGATTTA-TTGATT--T-TT-CTCG-C-ACTTGTT-TT 525
|||||||||||||||||||| ||| |||||| | || | | | || | || ||
Sbjct 527 ----CGCAGCTACAAAATCTTGAG-TTTCCTTGATTCATATTACCCAACTACCT-TTGTT 580
Query 526 GA-ATTCAAAATCTACAA-TATAAACTCTGATTCATGGAAGGTTCTTGATGTC--T-CTC 580
|| || |||||||||| | | ||| ||||| |||||||| ||| ||||||||| | |||
Sbjct 581 GATAT-CAAAATCTACGAGTGTAA-CTCTGGTTCATGGAGGGTACTTGATGTCGCTGCTC 638
Query 581 CAGATTGGAAGATAGATTCTTAT-AGTCGTGGCGTGTCTCTCAAGGGAAATACGTACTGG 639
|||| || || ||||| |||| || |||| || ||||||||||||||||| ||||||
Sbjct 639 CAGACGGGCAGGTAGATGATTATGAGG-GTGGAGTCTCTCTCAAGGGAAATACTTACTGG 697
Query 640 TTTGCTAGAGAGAGGCA---AGGAAG--CAGTA--------C---T-TT-CTTAGTCTGT 681
|||| || ||||| || || || ||||| | | || |||||| |||
Sbjct 698 TTTGTTAAAGAGAAGCCTTCAGAAACAACAGTAGGTGAGGACGACTCTTTCTTAGTATGT 757
Query 682 TTTGATTTCACAAGAGAGAGATTTAGATCACGTTTT-CCTCTGCCGATTCAGCCGTATAT 740
||||||||||||| |||||||||| | | | |||| ||||| ||| || || ||||
Sbjct 758 TTTGATTTCACAAAAGAGAGATTTGGGCCGC-TTTTGCCTCTACCGTTTGAGTGGTATCC 816
Query 741 TTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTCAGCG 800
| |||||||| | |||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 817 TGAAGATACCGCCACTCTATCTAGTGTTAGAGAGGAGCAGCTTGCGGTTTTATTTTAGCG 876
Query 801 CTCAAGATTATCAGAGATGGAGATGGAGAT-CTGGATAACCACGAA-ACTTGAGCCCAAC 858
| || | || |||| | |||||| | ||||||| || || | |||||||||||
Sbjct 877 ATGG-GAC-A-CATCGATGT-G--GGAGATAC-GGATAACTACTAAGA-TTGAGCCCAAC 928
Query 859 GCGGTGTCGTGGAA--CAG--C--AAG-GTGTTCTTAG--CA---A-TGGATATTGGCCT 905
||||||||||||| | | | || ||| | || || | | | | ||||| |
Sbjct 929 GCGGTGTCGTGGAGGTC-GTTCTTAACAGTGAA-TGAGAACACTCACTTGCT-TTGGCTT 985
Query 906 TCAATTTCAGTTT-CAAGTTAGAGCTGCAAGTTTCTTTATCGATGAGGAGAAGAAAGTTG 964
| ||||| ||| | |||| || || |||||||||||| || ||||||||| |||| |
Sbjct 986 TGGCTTTCAATTTGCG-GTTACAGGTGGAAGTTTCTTTATTGACGAGGAGAAGGAAGTCG 1044
Query 965 TTGTGGTTTTTGATAAAG---AGAAA-A--AATAT--TTAGTGT---CCAC---TCACAA 1010
|||||||||| ||||| | ||| | || || ||| | |||| || ||
Sbjct 1045 CGGTGGTTTTTGGTAAAGTCTACAAAGACGAAAATGGTTA-TACAAACCACCGCTCTCA- 1102
Query 1011 CATAGCTTA-CATCTTTGGAGAGGATGGAACCTTGGAACAAGTGGATCTTGGATTATCTG 1069
|| | |||| || || |||| |||||| ||||| || ||||| || ||||| ||||
Sbjct 1103 CA-A-CTTAGCAG-TT-GGAGTGGATGGTTCCTTGAAAAAAGTGTATGTTGGAGAATCTC 1158
Query 1070 CAGAC--AAATTTTGTTATCCACTTGTGTGCTGTTATGTTCCAAGTTTAGTGCA 1121
||||| ||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 1159 CAGACTGAAATT--GTTATCCACTTGT-TGCTCTTATGTTCCAAGTTTAGTGCA 1209
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 143 bits (77), Expect = 5e-33
Identities = 344/464 (74%), Gaps = 54/464 (12%)
Strand=Plus/Plus
Query 679 TGTTTTGATTTCACAAGAGAGAGATTTAGATCACGTTTTCCTCTGCCGATTCAG-C-CGT 736
||||||||||| |||| |||||||||| || | ||| ||| ||||||| |||| | |||
Sbjct 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTTCACTCTCGT 774
Query 737 ATATTTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTC 796
| | || ||||| |||| ||| |||||||||||||||||||||| ||||| |||||||
Sbjct 775 -TGTGTT-GATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTTATTTC 832
Query 797 AGCG-CTCAAGATTATCAGA-GATGG-AGATGGAGATCTGGATAACCACGAA-ACTTGAG 852
|| | ||||| | | | | ||| ||| || || ||||||| || || | |||||
Sbjct 833 AG-GACTCAAAA--A-C-GTTGATCCTAGA-GGT-AT--GGATAACGACTAAGA-TTGAG 882
Query 853 CCCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTAGCAA-TGGATATTG-G-CCT-TCA 908
|| || ||||| || |||| ||||||||||||||||| || || |||| | | || |||
Sbjct 883 CCTAATGCGGTCTCATGGAGCAGCAAGGTGTTCTTAG-AAGTGAATAT-GAGTCCACTCA 940
Query 909 AT--TT--CAGTTTCAAGTTAG-AGCT--GCAAGTTTCTTTATCGATGAGGAGAAGAAA- 960
| || |||||| || | | |||| | |||||||| || | ||||||||| |||
Sbjct 941 CTGGTTTTCAGTTT-AA-TC-GTAGCTTTGGGAGTTTCTTCATTGTTGAGGAGAA-AAAT 996
Query 961 GTTGTTGTGGTTTTTGAT-AAAGAGAAAAAATATTTAGTGTCCACTCACAACATAGCTTA 1019
|| ||||||||| | || |||| || || || | || | ||| |||||||
Sbjct 997 GTCGTTGTGGTTCCT-ATTAAAG-GAGGGCAT-TTCAA-----ACG-A-AACCTAGCTTA 1046
Query 1020 CATCTTTGGAGAGGATGGA-ACCTTGGAACAAGTGGATCTTGGATTATCT-G--CAGACA 1075
|||| ||||| |||||| | || || || |||||||||||||| | | | || | |
Sbjct 1047 CATCATTGGAAAGGATGAATAC-TTCAAAGAAGTGGATCTTGGAGTGCCAAGTTCATATA 1105
Query 1076 AAT-TTTGTTATCCACTTGTGTGCTGTTATGTTCCAAGTTTAGT 1118
|| ||| || |||| |||||||| ||||||||||||||||||
Sbjct 1106 TATATTT-TTCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGT 1148
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 143 bits (77), Expect = 5e-33
Identities = 344/464 (74%), Gaps = 54/464 (12%)
Strand=Plus/Plus
Query 679 TGTTTTGATTTCACAAGAGAGAGATTTAGATCACGTTTTCCTCTGCCGATTCAG-C-CGT 736
||||||||||| |||| |||||||||| || | ||| ||| ||||||| |||| | |||
Sbjct 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTTCACTCTCGT 774
Query 737 ATATTTTAGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGCTAGCGGTTTTATTTC 796
| | || ||||| |||| ||| |||||||||||||||||||||| ||||| |||||||
Sbjct 775 -TGTGTT-GATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTTATTTC 832
Query 797 AGCG-CTCAAGATTATCAGA-GATGG-AGATGGAGATCTGGATAACCACGAA-ACTTGAG 852
|| | ||||| | | | | ||| ||| || || ||||||| || || | |||||
Sbjct 833 AG-GACTCAAAA--A-C-GTTGATCCTAGA-GGT-AT--GGATAACGACTAAGA-TTGAG 882
Query 853 CCCAACGCGGTGTCGTGGAACAGCAAGGTGTTCTTAGCAA-TGGATATTG-G-CCT-TCA 908
|| || ||||| || |||| ||||||||||||||||| || || |||| | | || |||
Sbjct 883 CCTAATGCGGTCTCATGGAGCAGCAAGGTGTTCTTAG-AAGTGAATAT-GAGTCCACTCA 940
Query 909 AT--TT--CAGTTTCAAGTTAG-AGCT--GCAAGTTTCTTTATCGATGAGGAGAAGAAA- 960
| || |||||| || | | |||| | |||||||| || | ||||||||| |||
Sbjct 941 CTGGTTTTCAGTTT-AA-TC-GTAGCTTTGGGAGTTTCTTCATTGTTGAGGAGAA-AAAT 996
Query 961 GTTGTTGTGGTTTTTGAT-AAAGAGAAAAAATATTTAGTGTCCACTCACAACATAGCTTA 1019
|| ||||||||| | || |||| || || || | || | ||| |||||||
Sbjct 997 GTCGTTGTGGTTCCT-ATTAAAG-GAGGGCAT-TTCAA-----ACG-A-AACCTAGCTTA 1046
Query 1020 CATCTTTGGAGAGGATGGA-ACCTTGGAACAAGTGGATCTTGGATTATCT-G--CAGACA 1075
|||| ||||| |||||| | || || || |||||||||||||| | | | || | |
Sbjct 1047 CATCATTGGAAAGGATGAATAC-TTCAAAGAAGTGGATCTTGGAGTGCCAAGTTCATATA 1105
Query 1076 AAT-TTTGTTATCCACTTGTGTGCTGTTATGTTCCAAGTTTAGT 1118
|| ||| || |||| |||||||| ||||||||||||||||||
Sbjct 1106 TATATTT-TTCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGT 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5