BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342629
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24610.1 | Symbols: | Galactose oxidase/kelch repeat superf... 769 0.0
> AT3G24610.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:8975366-8978102 REVERSE LENGTH=1338
Length=1338
Score = 769 bits (416), Expect = 0.0
Identities = 556/622 (89%), Gaps = 15/622 (2%)
Strand=Plus/Plus
Query 607 CCAGTG-GTGGAGGAGAAGATTTACGTGGTGAATTCATGGGATGATGGAAGCTTTTACTA 665
|||||| | ||| || ||||| ||||||||| |||||||||||| |||||||| ||||||
Sbjct 724 CCAGTGCG-GGAAGAAAAGATATACGTGGTGGATTCATGGGATGTTGGAAGCTATTACTA 782
Query 666 CTTGCCGAGCCAGAGTAAATGGGAAAAAGGGAATCAAGATTCAAAGCGTAGCAAGGATTG 725
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CTTGCCGAGCAAGAGTATATGGGAAAAAGGGAATCAAGATTCAAAGCGTAGCAAGGATTG 842
Query 726 GTGTCTAATAGATAAGTTGATATACAGTTATGGTAACGACGGGGGTATATATTGGTGTGA 785
|||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||
Sbjct 843 GTGTCTAATAGATAAGTTGATATATAGTTGTGGTAACGATGGAGGTATATATTGGTGTGA 902
Query 786 GGCAGGGGAGTTAGATTGGTGTGATGCAGTGAAG-ATTGATTGGAGGGAGGTGTTGGGTT 844
|||||||||||| ||||||||||| ||||| | | || ||||||||||| ||||| ||||
Sbjct 903 GGCAGGGGAGTTGGATTGGTGTGACGCAGT-AGGGATAGATTGGAGGGAAGTGTTTGGTT 961
Query 845 TGGAGTTTTTGTCAATGGCGCTCCGTGATTCGAGTGTGGTATACTTTGGTGGGAAAATGG 904
|||||||| |||||| || ||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 962 TGGAGTTTCTGTCAAAGGAGCTCCGTGAATCGAGAGTGGTCTACTTTGGTGGGAAAATGG 1021
Query 905 TAAAAGTGTGGGAGTCCTATAAGATCATGTACAATATCAGCAAAAACCTTGAAGAATTAC 964
| ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 1022 TGAAAGTGTGGGAGTCCTACAAGATCATGTACAATATTAGCTTAAACCTTGAAGAATTAC 1081
Query 965 TTCCCGAGACC-ATATTGACCAACTTGATC-AACCTTGGTAAGAATGTTTTGGTCTTTTG 1022
||||||||||| | |||||||||||||| | ||| ||||| | |||||||||||||||||
Sbjct 1082 TTCCCGAGACCCA-ATTGACCAACTTGACCGAAC-TTGGTCATAATGTTTTGGTCTTTTG 1139
Query 1023 GGAAAAGCTCGAACGTGGTGGTGAT--TAC-ATGAGCATGGAGATTTGGTGTGTGCGGAG 1079
||||||||||||| || || ||||| | | || | ||||||||||||||| |||||
Sbjct 1140 GGAAAAGCTCGAATGTTGTTGTGATGGTTTTAAGATCTTGGAGATTTGGTGTG--CGGAG 1197
Query 1080 ATTTCGTTGGAAAAGTGGGAAGGAGGCCAGATTT-GGGGCAGGTGTGATTGGTGCCATCC 1138
||||||||||||| |||||| |||||| |||||| |||| ||||||||||||||||||||
Sbjct 1198 ATTTCGTTGGAAAGGTGGGAGGGAGGCGAGATTTTGGGG-AGGTGTGATTGGTGCCATCC 1256
Query 1139 TATCCTCGCAATCGATCTTCTCACGATTGATCCTCTCTTGTGCCACTTTAAGGTCTTGTA 1198
||||||||||||| ||||||||||| | ||||||||||| | ||||| || |||||||||
Sbjct 1257 TATCCTCGCAATCAATCTTCTCACGGTCGATCCTCTCTTCTACCACTCTATGGTCTTGTA 1316
Query 1199 TTCTATCCCTGTTGACGTTTGA 1220
||||||||||||||| ||||||
Sbjct 1317 TTCTATCCCTGTTGATGTTTGA 1338
Score = 348 bits (188), Expect = 9e-95
Identities = 227/246 (92%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 1 ATGTCCAAAGACGCTCCCGAAGTGGCAA-CACATAATAAGAGGAGGAAGAAAGAGGCATC 59
|||||||| || ||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 313 ATGTCCAATGAGGCTCCCGAAGTGG-AACCACATAGTAAGAGGAGGAAGAAAGAGGCATC 371
Query 60 TTCGTCGTCATCGTCAAGGTTTCTACATTCTTTGCCAGAAGCGGTGGCTATAAGTTGCTT 119
| |||||||||| ||| |||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 372 TCCGTCGTCATCTTCAGGGTTTCTACAATCTTTGCCAGAAGCGGTGGCTATGATTTGCTT 431
Query 120 AGCCTGCGTATCAAGATTGGACCATGCAGCCTTATCTCTCGTCTCCAAGACCTGCCGGTC 179
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 432 GGCCCGCGTATCAAGATTGGACCATGCAGCCTTATCTCTCGTCTCCAAGAGCTGCCGGTC 491
Query 180 AATGGTTCTTTCGTCCGAGCTCTACCAGACACGATCGTTGACGGGTTACGCTGAGAAATT 239
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 492 AATGGTTCTTTCACCCGAGCTCTACCAGACACGATCGTTGATAGGTTACGCTGAGAAGTT 551
Query 240 CCTCTA 245
||||||
Sbjct 552 CCTCTA 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5