BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342633 Length=1092 Score E Sequences producing significant alignments: (Bits) Value AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination e... 82.4 9e-15 AT3G04250.1 | Symbols: | F-box associated ubiquitination effec... 73.1 5e-12 > AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination effector family protein | chr1:21933021-21934216 FORWARD LENGTH=795 Length=795 Score = 82.4 bits (44), Expect = 9e-15 Identities = 57/63 (90%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 808 GAGATATGGATTACAACTAAGATTGATCCCAATGCAGTGTCGTGGAGCAAATTCTTT-AA 866 ||||| |||||||||| | |||||||||||||||||||||||||||||| ||| ||| || Sbjct 472 GAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCATATT-TTTGAA 530 Query 867 AGT 869 ||| Sbjct 531 AGT 533 > AT3G04250.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:1121950-1122828 FORWARD LENGTH=879 Length=879 Score = 73.1 bits (39), Expect = 5e-12 Identities = 157/211 (74%), Gaps = 19/211 (9%) Strand=Plus/Plus Query 658 ATATTCTGTTTTGATTTTACAACG-GAAAGATTTGGACC-TTGTTTGCATCTGCCCTTT- 714 ||| ||||||||||||| |||| | || |||||||| || | ||||| ||| || ||| Sbjct 280 ATAATCTGTTTTGATTTCACAA-GTGAGAGATTTGGGCCACT-TTTGCGTCTACCGTTTA 337 Query 715 GATTTTG--TTGGT-ACGGATGTGACTTTATCTTGTGTTAGAGAAGAGCAA-CTTGCGGT 770 | | | || | || ||||||||||||||||||||||||||||| || ||||||| Sbjct 338 GCGCTGGCCATGATGAC-TATGTGACTTTATCTTGTGTTAGAGAAGAG-AAGCTTGCGGC 395 Query 771 ATTTGCTCATAGCTGCGT-GACAGGTA-C-ATATAAGATGGAGATATGGATTACAACTAA 827 ||| || | || | ||| || | | |||| || | ||||||||||| || ||||| Sbjct 396 -TTTACTTAC-GCA-CAACGACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAA 452 Query 828 GATTGA-TCCCAATGCAGTGTCGTGGAGCAA 857 ||| || | | | ||||||||||||||| Sbjct 453 GATCGAGTATGA-TAAAGTGTCGTGGAGCAA 482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53513780970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5