BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342633

Length=1092
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination e...  82.4    9e-15
  AT3G04250.1 | Symbols:  | F-box associated ubiquitination effec...  73.1    5e-12


> AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination 
effector family protein | chr1:21933021-21934216 FORWARD LENGTH=795
Length=795

 Score = 82.4 bits (44),  Expect = 9e-15
 Identities = 57/63 (90%), Gaps = 2/63 (3%)
 Strand=Plus/Plus

Query  808  GAGATATGGATTACAACTAAGATTGATCCCAATGCAGTGTCGTGGAGCAAATTCTTT-AA  866
            ||||| |||||||||| | |||||||||||||||||||||||||||||| ||| ||| ||
Sbjct  472  GAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCATATT-TTTGAA  530

Query  867  AGT  869
            |||
Sbjct  531  AGT  533


> AT3G04250.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr3:1121950-1122828 FORWARD LENGTH=879
Length=879

 Score = 73.1 bits (39),  Expect = 5e-12
 Identities = 157/211 (74%), Gaps = 19/211 (9%)
 Strand=Plus/Plus

Query  658  ATATTCTGTTTTGATTTTACAACG-GAAAGATTTGGACC-TTGTTTGCATCTGCCCTTT-  714
            ||| ||||||||||||| |||| | || |||||||| ||  | ||||| ||| || ||| 
Sbjct  280  ATAATCTGTTTTGATTTCACAA-GTGAGAGATTTGGGCCACT-TTTGCGTCTACCGTTTA  337

Query  715  GATTTTG--TTGGT-ACGGATGTGACTTTATCTTGTGTTAGAGAAGAGCAA-CTTGCGGT  770
            |   | |   || | ||  ||||||||||||||||||||||||||||| || ||||||| 
Sbjct  338  GCGCTGGCCATGATGAC-TATGTGACTTTATCTTGTGTTAGAGAAGAG-AAGCTTGCGGC  395

Query  771  ATTTGCTCATAGCTGCGT-GACAGGTA-C-ATATAAGATGGAGATATGGATTACAACTAA  827
             ||| || |  ||  |   ||| || | | |||| || | ||||||||||| || |||||
Sbjct  396  -TTTACTTAC-GCA-CAACGACTGGAATCCATATGAGTTTGAGATATGGATCACGACTAA  452

Query  828  GATTGA-TCCCAATGCAGTGTCGTGGAGCAA  857
            ||| || |   | |  |||||||||||||||
Sbjct  453  GATCGAGTATGA-TAAAGTGTCGTGGAGCAA  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53513780970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5