BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342635
Length=2205
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24630.1 | Symbols: | unknown protein; Has 5348 Blast hits ... 3125 0.0
> AT3G24630.1 | Symbols: | unknown protein; Has 5348 Blast hits
to 3182 proteins in 353 species: Archae - 0; Bacteria - 481;
Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10;
Other Eukaryotes - 2313 (source: NCBI BLink). | chr3:8988055-8990873
FORWARD LENGTH=2489
Length=2489
Score = 3125 bits (1692), Expect = 0.0
Identities = 2049/2215 (93%), Gaps = 50/2215 (2%)
Strand=Plus/Plus
Query 1 ATGCCTGAAGGGAAATTGAGATCAGGAGTTTATAGATCATTCATAATGTGTGATGATCCA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATGCCTGAAGGGAAATTAAGATCAGGAGTTTATAGATCATTCATAATGTGTGATGATCCA 238
Query 61 AGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGTCGTAGTAGTAGTACT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 239 AGAGATGTTGTTGAATGTGGAGCTATTAAGAAACAGAGTAAGAGCCGTAGTAGTAGTACT 298
Query 121 AAACAGAGATGTGAAGAACATCTTTCGAAAGCGAAAGAGCGGTCCGAAATGGCGGTGGCG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 AAACAGAGATGTGAAGAACATCTTTCGAAAGTGAAAGAGCGGTCCGAAATGGCGGTGGCG 358
Query 181 CCTAGGAAGAGTAGTA---CAGAGGATGTTCCTCCTTCTTCGTTGCAGCTTTTGAGAGTA 237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCTAGGAAGAGTAGTAGTACAGAGGATGTTCCTCCTTCTTCGTTGCAGCTTTTGAGAGTA 418
Query 238 TCTAAAGGGATTCAGAAACTGAATGTTGCGATTGAGTCATGGTCTAAAGGGTTTAGCTTT 297
|| ||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||
Sbjct 419 TCCAAAGGGATTCAGAAATTGAATGTTGCAATTGAGTCATTGTCTAAAGGTTTTAGCTTT 478
Query 298 GAGGCAGTGTCGAGGCCTGAGGATATAGCGAAAGATTTGTTAAGAGGAGCACTTGATTTG 357
||||| ||||| |||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 479 GAGGCGGTGTCAAGGCCTGAGGATATAGCGAAAGATCTGTTGAGAGGAGCTCTTGATTTG 538
Query 358 GAAGAGTCTTTAGCTATGTTAAGTAGTATTCAAGAAGATGATAGTAAGCAGAAACCGAGG 417
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 539 GAAGAGTCTTTAGCTATGTTAAGTAGTATTCAAGAAGATGATAGTAAGCGGAAACCGATG 598
Query 418 ATTTGTAAAGACGGAAGAAGCGATTTGCGGTTTCAAAGATCGATGTCGGATAGATTCGGA 477
||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 ATTCGGAACGATGGAAGAAGCGATTTGCGGTTTCAAAGATCGATGTCTGATAGATTCGGA 658
Query 478 GAGCG-AGTTGAGAAACGGATGATGGTTCAAGAGAATGTAGCATCAAAGGATTGTTATGA 536
||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 659 GAGCGGA-TTGAGAAACGGATGATGGTTCAAGAGAATGTAGCGTCTAAGGATTGTTATGA 717
Query 537 AGAGTTAAGGAAAGTGATTAGAGAGAGTTTTCTTAGGCAGAATCTTGTTTCACAAACAAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGAGTTAAGGAAAGTGATTAGAGAGAGTTTTCTTAGGCAGAATCTTGTTTCACAAACAAC 777
Query 597 TACTACGGGGACTAAGACTCGAGTTGTTAGAAATGATTTTGCTTCTTCTTCTGGAGCTGC 656
||||| | |||||||| ||||||||||||| |||||||||||| |||||||||||||
Sbjct 778 TACTATAGAGACTAAGAAACGAGTTGTTAGAAGTGATTTTGCTTCCTCTTCTGGAGCTGT 837
Query 657 ATCGTCGTCAACGAGCTCGAGCCAATCTTCTATGGTTTCTGGCTCTACAAAGTCCTCTGT 716
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 838 GTCGTCGTCAACTAGCTCGAGCCAATCTTCAATGGTTTCTGGCTCTACTAAGTCCTCTGC 897
Query 717 TTCGTCTGATATTCCACGGAGAGCTCCAAGTTTGATTGCTAGGCTTATGGGTTTGGATGT 776
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTCGTCTGATGTTCCACAGAGAGCTCCAAGTTTGATTGCTAGGCTTATGGGTTTGGATGT 957
Query 777 ATCAACTCAAGAACCAAGCAAAAGCACGGTGAATCATATTGATAAGGCGGATGTTTTAAA 836
||||||||||||||| || |||||| ||||||||||||| |||||| ||||| |||||||
Sbjct 958 ATCAACTCAAGAACCGAGGAAAAGCTCGGTGAATCATATCGATAAGCCGGATATTTTAAA 1017
Query 837 GCTGTCATCAGAAAGACAAGAGAAGGTGAAGAAGAATAATAAGGAGAGTCCTGAAATTGT 896
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 GCTGTCATCAGAAAGACAAGAGAAGGTGAAGAAGAATAGTAAGGAGAGTCCTGAAATTGT 1077
Query 897 GAGATGCAGCTCTATGAGAGAAGCTGTTTTACAATCTTTGCCTGAAGAGATTCCGAGAGA 956
|||||||| ||||| |||||||||| |||||| |||||||||||||||| |||||| ||
Sbjct 1078 GAGATGCAACTCTACAAGAGAAGCTGCTTTACAGTCTTTGCCTGAAGAGACTCCGAGCGA 1137
Query 957 GAATCCCTCGACTATAGTACTCATCAGACCTATGCGTGTTGTACAACCCGAGATGGAAGA 1016
|||||| |||||||||||||||||||||||||||||||||||| |||| | || |
Sbjct 1138 GAATCCTTCGACTATAGTACTCATCAGACCTATGCGTGTTGTAAAACC-G-GA---A--- 1189
Query 1017 AAAGCCGGGAAGCAAACGACCGGTTGTACCTAAGAAACCGAGAATGCAAGGGGAGGTTCA 1076
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1190 ----CCGGGAAGCAAACAACCGGTTGTACCAAAGAAACCGAGAATGCAAGGGGAGGTTCA 1245
Query 1077 TCCAAGAATGATTAACCAGAGAAAAGATCATCAAGCCAAGGGAAGCAACAAAATGAAATT 1136
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1246 TCCAAGAATGATTAACCAGAGAAAAGATCATCAAGCTAATGGAAGCAACAAAATGAAATT 1305
Query 1137 ACCATTAAGTCTGACCAAGAAAGACAAAGAACCGAAAGAAATGGTGCGGAAAGTAGAAGA 1196
||||||| || |||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1306 ACCATTACGTATGACCAAGAAGGACAAAGAACCGAAAGAAATGGTGCCTAAAGTAGAAGA 1365
Query 1197 GAATGAAGGTAAGGTGATCAAGCTAATGTCTCCAAGCAATGGCAGAACT-CTAACTAGAG 1255
||||||||||||||| ||||||||||||||||||||||||| || || | ||||| ||||
Sbjct 1366 GAATGAAGGTAAGGTCATCAAGCTAATGTCTCCAAGCAATGCCA-AAGTTCTAACAAGAG 1424
Query 1256 ATCGAAAACCGTTGGAAACCAACAAAACCAACAAAAAACTTGTTGTCAAGAAGGAGGATA 1315
||||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 1425 ATCGAAAACCGTTGGAAACCAACAAAA--AAC-------TTGTTGTCAAGAAGGATGATA 1475
Query 1316 TTGCTGAAGGTAAAGACAGACATAGACCTCATGACCGAGCTCTTAAACCACCTAGCAATT 1375
|||||||||| ||||||||||||||| | | |||||||||||| ||||||
Sbjct 1476 TTGCTGAAGGCAAAGACAGACATAGA------G-C-----TCTTAAACCACCCAGCAATC 1523
Query 1376 CTGCGACTCAAAAGAAATCGAACAATTCTTCAGACGTATCAAGAAACAAGAGTCGACGTT 1435
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CTGTGAGTCAAAAGATATCGAACAATTCTTCAGACGTATCAAGAAACAAGAGTCGACGTT 1583
Query 1436 CCAGCAGGTTGAGCTCAAGCTCTAGTAGTGGTAGCCGAGAAAAGAAGTCCGGTGAGGCTA 1495
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1584 CCAGTAGGTTGAGCTCAAGCTCTAGTAGTGGTAGCCGGGAAAAGAAGTCCGGTGAGGCTA 1643
Query 1496 GTAGACCAAATGCCAAGAAGAAACTCCGTCAACAAGACAACAACCTCGGTTCAGAGAATC 1555
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1644 GTAGACCAAATGCCAAGAAGAAACTCCGTCAACAAGACAACGACCTCGGTTCAGAGAATA 1703
Query 1556 ATTC---CTCTTCACAGGACACGCTTGGATCACTTAACCAACTTTCTACAGAAGAAACCA 1612
|||| ||||||||| || |||| |||||||||||||||||| |||||||| |||||||
Sbjct 1704 ATTCATGCTCTTCACAAGAGACGCATGGATCACTTAACCAACTGTCTACAGAGGAAACCA 1763
Query 1613 TTTCTTCAGAGTTTCACAATCAAGGCCAATGTGACAATGGAGAAGTTTCATCTTGTGCTG 1672
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1764 CTTCTTCAGAGTTTCACAATCAAGGCCATTGTGACAATGGAGAAGTTTCATCATGTGCTG 1823
Query 1673 CCACAATTCACTATTCTCATGAGCCAGAAACATCCCAAATCTCTCTTAAATCATTCCTAT 1732
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1824 CCACAATTCACCATTCTCATGAGCCAGAAACATCCCAAATCTCTCTTAAGTCATTCCTAT 1883
Query 1733 CCAGCTCCTCAGAGTTCATCAGCTACGCAGAGGATCTTTTCGACTTCAACACCAACACTA 1792
||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1884 CCACCTCCTCGGATTTCATCAGCTACGCAGAGGATCTCTTCGACTTCAACACCAACACCG 1943
Query 1793 AACGAAGCCGAGAATCAAACTTTGGAA-ATAGAGATAACATTGTGATATCAGACCAAAGA 1851
|||||||| |||||||||||||| ||| | ||||||| ||||||||| ||||||||||||
Sbjct 1944 AACGAAGCAGAGAATCAAACTTTCGAAGA-AGAGATAGCATTGTGATCTCAGACCAAAGA 2002
Query 1852 CTAGCACTAGACTTTGCCAAAGAAGTAGCCAGACGCAAAAGCCTTCTTCTAGCCGAAC-A 1910
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 2003 CTAGCACTAGACTTTGCCAAAGAAGTAGTCAGACGCAAAAGCCTTCTTCTAGCAGAACCA 2062
Query 1911 ACCGTGTCACACAAGAAGCTCTTTGCACATTGATGAGGTGTTAATGGAAGTCTGCGATGG 1970
|| |||||||||| ||||||||||| ||||||||||| |||| | |||||||| |||||
Sbjct 2063 AC-GTGTCACACACGAAGCTCTTTGGACATTGATGAGTTGTTGACAGAAGTCTGTGATGG 2121
Query 1971 GTTTGAGTCTCTGGGAAGTTACAAAGACACGTTTTTAGGACAGAACAGCTTCGTTAAAGA 2030
||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 2122 GTTTGAGTCTCTGACAAGTTACAAAGACACGTTTTCAGGACAAAACAGCTTCGTTAAAGA 2181
Query 2031 GACCATTCACTTGGTGTTGGAGAAGGATTTAAAGGGTAAGAAGACAGAGATGACAAGTGG 2090
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2182 GAGCATTCACTTGGTGTTGGAGAAGGATTTAAAGGGTAAGAAGACAGAGATGACAAGTGG 2241
Query 2091 AGTTTGGGATTTGGGTTGGAAAAATGAGTTTCAGATTGATGAAACTTATGAAGCTGTAGT 2150
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2242 AGTTTGGGATTTGGGTTGGAGAAGTGAGTTTCAGATTGATGAAACTTATGAAGCTGTAGC 2301
Query 2151 AGTTGACTTAGAGAAACTTATCTTGTCCAGTTTGATCCAAGAAATTATCTCTTGA 2205
| |||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 2302 --T-GACTTAGAGAAACTTATCTTGTCCGGTTTGATCCAAGAGATTATCTCTTGA 2353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109386987555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5