BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342636
Length=2178
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24650.1 | Symbols: ABI3, SIS10 | AP2/B3-like transcriptiona... 3188 0.0
> AT3G24650.1 | Symbols: ABI3, SIS10 | AP2/B3-like transcriptional
factor family protein | chr3:8997370-9001063 FORWARD LENGTH=2987
Length=2987
Score = 3188 bits (1726), Expect = 0.0
Identities = 2042/2190 (93%), Gaps = 39/2190 (2%)
Strand=Plus/Plus
Query 1 ATGAAAAGCTTGCATGTGGCGGCAAACGGCGAAGATCTGGCTGAGGATTGTGGAATACTA 60
||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 542 ATGAAAAGCTTGCATGTGGCGGCCAACGCCGGAGATCTGGCTGAGGATTGTGGAATACTC 601
Query 61 GCCGGAGACGCTGATGATGCTGCTTTGATGGATGGAATGGATGAAGTTGGTAGAGAGATC 120
| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 602 GGTGGAGACGCTGATGATACTGTTTTGATGGATGGAATTGATGAAGTTGGTAGAGAGATC 661
Query 121 TGGCTAGATGACCATGGAGGAGATCATAATCATGTTCATGTTCATAGTCATGAAGATGAT 180
||| |||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 662 TGGTTAGATGACCATGGAGGAGATAATAATCATGTTCATG------GTCATCAAGATGAT 715
Query 181 GATTTGATTGTTCATCATGACCCTTCAATATTCTATGGAGATCTCCCAACGCTTCCTGAT 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 716 GATTTGATTGTTCATCATGACCCTTCAATCTTCTATGGAGATCTCCCAACGCTTCCTGAT 775
Query 241 TTCCCATGCATCTCGTCATCATCATCTTCTTCAACATCTCCAGCTCCTGTCAACGCAATC 300
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 TTCCCATGCATGTCGTCTTCATCATCGTCTTCAACATCTCCAGCTCCTGTCAACGCAATC 835
Query 301 GTCTCTTCAGCATCTTCCTCTTCGGCAGCTTCTTCCTCCACTTCCTCAGCTGCTTCTTGG 360
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GTCTCCTCAGCCTCTTCTTCTTCGGCAGCTTCTTCCTCCACTTCCTCAGCTGCTTCTTGG 895
Query 361 GCCATATTGAGATCAGATGGAGAAGATCCGACTCCAAACCAAAACCAATACGCATCAGGT 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCTATATTGAGATCAGATGGAGAAGATCCGACTCCAAACCAAAACCAATACGCATCAGGA 955
Query 421 AACTGTGACGACTCTTCTGGCGCATTGCAATCCACAGGTTCCATGGAGATTCCATTAGAC 480
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 956 AACTGTGACGACTCTTCTGGTGCATTGCAATCCACAGCTTCCATGGAGATTCCATTAGAC 1015
Query 481 AATAGTCAAGGCTTCGGTTGCGGTGAAGGCGGTGGTGATTGCATTGATATGATGGAGACT 540
| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGCAGTCAAGGTTTTGGTTGCGGCGAAGGCGGTGGTGATTGCATTGATATGATGGAGACT 1075
Query 541 TTCGGGTATATGGATCTACTTGATAGCAACGAGTTCTTTGATACCTCAGCTATCTTCAGC 600
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1076 TTCGGGTACATGGATCTACTTGATAGCAACGAGTTCTTTGACACCTCAGCTATATTTAGC 1135
Query 601 CAAGACGACGACACGCAAAACCCTAACTTGATGGACCAAACACTCGAGAGACAACAAGAC 660
||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 1136 CAAGACGACGACACGCAAAACCCTAACTTGATGGACCAAACCCTTGAGAGACAAGAAGAC 1195
Query 661 CAGGTTGTTGTTCCGATGTTGGAGAAAAATAGTGGTGGAGACATGCAAATGATGAATTCT 720
||||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 1196 CAGGTCGTTGTTCCGATGATGGAGAATAACAGTGGTGGAGACATGCAAATGATGAATTCT 1255
Query 721 TCCTTGGAACAAGACGATGATCTAGCTACTGTGTTCTTAGAGTGGCTAAAGAACAACAAG 780
||||||||||| ||||||||||| ||| ||||||| || |||||||||||||||||||||
Sbjct 1256 TCCTTGGAACAGGACGATGATCTCGCTGCTGTGTTTTTGGAGTGGCTAAAGAACAACAAG 1315
Query 781 GAGACTGTGTCGGCTGAGGATTTGAGGAAAGTGAAGATAAAGAAAGCAACGATAGAGTCA 840
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||
Sbjct 1316 GAGACTGTGTCGGCTGAGGATTTGAGGAAAGTAAAGATAAAGAAAGCTACGATTGAATCA 1375
Query 841 GCGGCGAGAAGGCTTGGCGGTGGTAAAGAAGCGATGAAGCAGCTTTTGAAGCTGATTCTT 900
||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 GCGGCAAGAAGACTAGGCGGTGGTAAAGAAGCGATGAAGCAGCTTTTAAAGCTGATTCTT 1435
Query 901 GAATGGGTCCAAACTAATCACTTACAAAGAAGACGCACCACCACCAACAACAACAACAAC 960
||||||||||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 1436 GAATGGGTCCAAACTAATCACTTACAAAGAAGACGCACCACCACC-AC--CACCACCAAC 1492
Query 961 TTCTCTTATCAACATTCATTCCAACAAGATCCATTTCAAAACCCTAACCCTAATAACAAC 1020
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CTCTCTTATCAACAATCATTCCAACAAGATCCATTTCAAAACCCTAACCCTAATAACAAC 1552
Query 1021 AACCTAATCCCACCGTCTGACCAAACCTGTTTCTCACCTTCTACATGGGTTCCTCCACCA 1080
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1553 AACCTAATCCCACCGTCCGACCAAACCTGTTTCTCACCTTCAACATGGGTTCCTCCACCA 1612
Query 1081 CCACCACAACAAGCTTTTGTCTCCGACCCGGGTTTTGGATACATGCCTGCTCCAAACTAT 1140
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1613 CCACAACAACAAGCTTTTGTCTCGGACCCGGGTTTTGGATACATGCCTGCTCCAAACTAT 1672
Query 1141 CCACCACCGGGAGAGTTCCTTCCTTTACTTGAATCTCCACCATCATGGccaccaccacca 1200
|| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1673 CCGCCACAGCCAGAGTTCCTTCCTTTACTTGAATCTCCACCGTCATGGCCACCACCACCA 1732
Query 1201 ccaccaccGCAGTCTGGTCCTATGCCACATCAACAATTCGCTATGCCACCAAACACGCAG 1260
| | | |||||||| |||||||||||||||||| | ||||| |||| | |||||
Sbjct 1733 C-A-----G---TCTGGTCCCATGCCACATCAACAATTCCCCATGCCGCCAACCTCGCAG 1783
Query 1261 TATAATCAATTTGGAGAGCCAACAGGTTTCACA-GGATACAACATGAATCCGTATCAATA 1319
||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||
Sbjct 1784 TATAATCAATTTGGAGATCCAACAGGTTTCA-ATGGATACAACATGAATCCGTACCAATA 1842
Query 1320 TCCTTATGTTCCTGCAGGACAGGTGAGAGATCAGAGATTGCTACGTTTGTGTTCCTCAGC 1379
||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 1843 TCCTTATGTTCCTGCAGGACAAATGAGAGATCAGAGATTACTCCGTTTGTGTTCCTCAGC 1902
Query 1380 AACTAAAGAGGCAAGaaaaaaaCGGATGGCTAGACAGCGGAGGTTCTTGTCTCACCACCA 1439
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||
Sbjct 1903 AACTAAAGAGGCAAGAAAGAAACGGATGGCGAGACAGAGGAGGTTCTTGTCTCATCACCA 1962
Query 1440 CAGACATaacaacaacaacaacaa---------TAATCAGCAGAACCAGACCCAAATCGG 1490
|||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1963 CAGACATAACAACAACAACAACAACAACAACAATAATCAGCAGAACCAAACCCAAATCGG 2022
Query 1491 AGAGACCTGTGCCGCCGTGGCTCCACAACTTAACCCTGTGGCCACAACCGCCACCGGAGG 1550
||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2023 AGAAACCTGTGCCGCGGTGGCTCCACAACTTAACCCCGTGGCCACAACCGCCACGGGAGG 2082
Query 1551 GACCTGGATGTATTGGCCTAATGTCCCGGCTGCGCCGCCGCCTCAATTACCACCGGCGAT 1610
|||||||||||||||||||||||||||||| | |||||| ||||||||| || | |||
Sbjct 2083 GACCTGGATGTATTGGCCTAATGTCCCGGCAGTGCCGCC---TCAATTACCGCCAGTGAT 2139
Query 1611 GGAGACTCAGTTACCAACCATGGACCGAGCTGGCTCT-CTTGCTGCTATGCCACGTCAGC 1669
||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 2140 GGAGACTCAGTTACCTACCATGGACCGAGCTGGCTCAGCTT-CTGCTATGCCACGTCAGC 2198
Query 1670 AGGTGGTACCAGATCGTCGGCAGGGATGGAAACCAGAAAAGAATTTGCGGTTTCTCTTGC 1729
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 AGGTGGTACCAGATCGCCGGCAGGGATGGAAACCAGAAAAGAATTTGCGGTTTCTCTTGC 2258
Query 1730 AGAAAGTCTTGAAGCAAAGCGACGTGGGTAACCTCGGAAGGATCGTCTTACCaaaaaaaG 1789
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2259 AGAAAGTCTTGAAGCAAAGCGACGTGGGTAACCTCGGAAGGATCGTTTTGCCAAAAAAAG 2318
Query 1790 AAGCTGAGACACACTTGCCGGAGCTAGAGGCAAGAGATGGCATCTCTCTGGCCATGGAAG 1849
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2319 AAGCTGAGACACACTTGCCGGAGCTAGAGGCAAGAGACGGCATCTCTCTGGCCATGGAAG 2378
Query 1850 ACATCGGAACCTCTCGTGTTTGGAACATGCGCTACAGGTTTTGGCCTAACAACAAAAGCA 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 ACATCGGAACCTCTCGTGTTTGGAACATGCGCTACAGGTTTTGGCCTAACAACAAAAGCA 2438
Query 1910 GGATGTATCTCCTCGAGAACACCGGTGATTTTGTGAAAACTAATGGGCTCCAAGAAGGTG 1969
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2439 GGATGTATCTCCTCGAGAACACCGGCGATTTTGTGAAAACCAATGGGCTCCAAGAAGGTG 2498
Query 1970 ATTTCATAGTCATATACTCCGACGTCAAATGTGGCAAATATTTGATACGTGGTGTTAAAG 2029
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2499 ATTTCATAGTCATATACTCCGACGTCAAATGTGGCAAATATTTGATACGAGGGGTTAAAG 2558
Query 2030 TAAGACAACCGA-CGGGACAAAAGCCGGAGGCTCCGCCTTCATCAGCAGCCGCCACGAAG 2088
|||||||||||| ||| ||||||||||||||| || || || |||||||| ||||||
Sbjct 2559 TAAGACAACCGAGCGG-ACAAAAGCCGGAGGCCCCACCGTCGTCAGCAGCT---ACGAAG 2614
Query 2089 AGACAAAACAAGTCGCAGAGGAACATTAACAATAACTCTCCGTCTGCGAATGTGGTGGTC 2148
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2615 AGACAAAACAAGTCGCAAAGGAACATAAACAATAACTCTCCGTCGGCGAATGTGGTGGTC 2674
Query 2149 GCTTCACCAACTTCTCAAACTGTTAAATGA 2178
||||||||||||||||||||||||||||||
Sbjct 2675 GCTTCACCAACTTCTCAAACTGTTAAATGA 2704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108031572840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5