BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg342640 Length=3051 Score E Sequences producing significant alignments: (Bits) Value AT5G58880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3843 0.0 > AT5G58880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23775966-23779504 FORWARD LENGTH=3267 Length=3267 Score = 3843 bits (2081), Expect = 0.0 Identities = 2553/2775 (92%), Gaps = 55/2775 (2%) Strand=Plus/Plus Query 1 ATGGGCATTGCCGCGAAAGAGATCATCGTAATATTATGGAAAATTCTTGGATATTCGATG 60 |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGGCATTGACACGAAAGAGATCATCGTTATATTATGGAAAATTCTTGGATATTCGATG 60 Query 61 AACATGAGCATCAAATTCATGAGAAACCACCCAATATTGTCAAGGGTTTCAATGTTTTTA 120 |||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||| Sbjct 61 AACATGAGCATCAAATTCATGATAAACCACCCGGTTTTGTCAGGGGTTTCAATGTTTTTA 120 Query 121 CTTGTGCTATACATTTTCCTCCCTACTCTCTTGTTCTTCTTGATTTACT-CGTCACCGGT 179 || ||||||||||||||||||||| |||| || ||||||||||| || | | |||||||| Sbjct 121 CTCGTGCTATACATTTTCCTCCCTTCTCTGTTCTTCTTCTTGATCTA-TACATCACCGGT 179 Query 180 TCTTGCATGTGCTCTAGTGTATGCACGAGAAAAGCTAGGATTAAGATTCTCAAGTTCGTA 239 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 180 TCTTGCATGTGCTCTAGTGTATGCCCGAGAAAAGCTAGGGTTAAGATTCTCAAGTTCGTA 239 Query 240 TTCAGAGCCAAAGAAGAGTTGTGGTGGAGAAAAGAGATGTCATTTAAAACAACAACGAAG 299 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 240 TTCAGAGCCAAAGAAGAGTTGTGGAGGAGAAAAGAGATGCCATTTAAAACAACAACGAAG 299 Query 300 TGTCCGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAAACAAGCGAGGAAGA 359 ||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 300 TGTTAGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAGACAAGCGAAGAAGA 359 Query 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGACCTCCTTGGTCGTACTCCTCATTT 419 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGATCTCCTTGGTCGTACTCCTCAATT 419 Query 420 CGAGGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGAGGAAG-A-AA-ACAATGAGAA 476 ||| |||||||||||||||||||||||||||||||||||||||| | || |||| ||||| Sbjct 420 CGAAGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGAGGAAGAAGAAGACAAAGAGAA 479 Query 477 GGAGTTTCTTGGAGAGGAAGATTCTCGTGATTTAGGTCAACTTAACGTTGAAGAACCAAT 536 ||||||||||||||||| || |||||||||||| ||||| || ||||||||||||||||| Sbjct 480 GGAGTTTCTTGGAGAGGGAGTTTCTCGTGATTTGGGTCATCTCAACGTTGAAGAACCAAT 539 Query 537 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGAAGAGATGAAAGAGGA 596 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 540 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGTAGAGATGAAACAGGA 599 Query 597 GATGAGTAATGTTAATGAGCAGGGGATTTCagagattgagagaaataagagactagagag 656 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 600 GATGAGTAATGCTAATGAGCATGGGATTTCAGAGATTGAGAGAAATAAGAGACTAGAG-T 658 Query 657 c-ttaatagctagaagaagagcgaggagaCTCTTTAGACTAGCTTTAGATCAAAGGAATA 715 | ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 659 CTTTAATCGCTAGAAGAAGAGCGAGGAGACGCTTTAGACTAGCTTTAGATCAAAAGAATA 718 Query 716 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAGCCTTCACGTTA 775 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 719 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAACCTTCACGTTA 778 Query 776 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 838 Query 836 AAGGATTACCGATTCCAGGCTCAGCTCCTTCTGTGTTGTTACAAGGAAGAAACCCTTTTG 895 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 839 AAGGATTACAGATTCCAGGCTCAGCTCCTTCTGTGATGTTACAAGGAAGAAACCCTTTTG 898 Query 896 ACATACCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 955 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ACATTCCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 958 Query 956 AATTTTCATTGTTTAATCAGAAAGATATGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1015 | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 959 AGTTTTCATTGTTTAATCAAAAAGATTTGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1018 Query 1016 TTGCTCTGTTTTCACCAGAACATGCTCAATGTATGAACAGCCCAGTTTCTGCTTCAGACA 1075 || ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1019 TTTCTCTGTTCTCACCAGAACATGTTCAGTGTATGAACAGCCCAGTTTCTGCTTCAGACA 1078 Query 1076 TTTCAACTACTAGGAAACGTTTAGATTTGGACAATGAATATATGGATCATACTGAACAAA 1135 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1079 TTTCAACTACTAGGAAACGTTTAGATTTGGAGAATGAATATATTGATCATACTGAACAAA 1138 Query 1136 ATCTCCCATGT-AATGGAAAGGGAGCTACAATAGAAGACGACGATAAAAGCGTTGTGAGT 1194 ||||||||| | |||||||| | |||||||||||||||||| |||||||||||||||||| Sbjct 1139 ATCTCCCAT-TAAATGGAAAAGAAGCTACAATAGAAGACGATGATAAAAGCGTTGTGAGT 1197 Query 1195 GGAAAAAGCGAAGAAAGGGAGGTAGAAATGAATGATAATGAGACAGATTCAAACAAAGAA 1254 ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1198 CGAAAAAGCGAAGAAAAAGAGGTAGAAATGAATG---ATGAGACAGATTCAAACAAAGAA 1254 Query 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACTCA-GCCGTTTAAACAA 1313 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACT-ATGCCGTTTAAACAA 1313 Query 1314 AGCCGAGCTCAGGGAAGCTATATGCCAATCGATGGATAACAATCCCGGTTATCTTGTGAA 1373 ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1314 AGCGGAGCTCAGGGAAGCTATATGCCAATCCATGGACAACAATCCCGGTTATCTTGTGAA 1373 Query 1374 CCAAACAAGAAATAGTATTCCAACCACATTGCCTAGAGGTTTAGTAGCGCCAAGACTAGA 1433 ||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| Sbjct 1374 TCAAGCAAGAAATAGTATTCCAAGCACATTACCTAGAGGTATAGTAGCGCCAAGACTAGA 1433 Query 1434 TGATAACAACATGTTTTATGCTCGAAAATGCGGAAATTCGCACAGTCGAACATTTTCAGT 1493 |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1434 TGATAACAACATGTTTTACGCTCGCAAATGTGGAAATTCGCACAGTCGAACATTTTCAGT 1493 Query 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553 Query 1554 GCTTGATGACTGGTCTAATGGCGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1554 GCTTGATGACTGGTCTACTGGTGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613 Query 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATCTCTCACCAGTATGAATCAAGAAGTGG 1673 ||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATGTCTCATCAATATGAATCAAGAAGTGG 1673 Query 1674 AATAGGATCAAAAGAGGAGAATAATGAGACATGGACTAAACCTGAGGCCAAACCAAATCA 1733 ||||||||||||||||||||||| |||| || | ||||||||||||||||||||| |||| Sbjct 1674 AATAGGATCAAAAGAGGAGAATAGTGAGCCAAGTACTAAACCTGAGGCCAAACCAGATCA 1733 Query 1734 GAATTGTGTGGTAGATGAAAACCTTATAACAGTTGATGATGATTTGTCATTGTTAGAAAG 1793 | ||||||||||||||||| |||||||||||||||||||| || |||||||||||| || Sbjct 1734 GGATTGTGTGGTAGATGAAGACCTTATAACAGTTGATGAT-AT--GTCATTGTTAGATAG 1790 Query 1794 AAGAAGCCAAACCGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAATGATGTGTCCAA 1853 ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1791 AAGAACCCAAAGTGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAGTGATGTGTCCAA 1850 Query 1854 GCCTACAAGCTCTGGGAAATTTGAAGGTATGTTGTTCCATACAAGTGCGTCATTGTCGTC 1913 ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 1851 GCCTACAAGTTCTGGGAGATTTGAAGGTATGTTGTTCCATACAAGTGCCTCATTGTCGTC 1910 Query 1914 TATAACAGAAGAGCCTGAAACAATCTTGGACTCGATCGATGGGGGCAACTCGGAGAATCT 1973 |||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||| | | Sbjct 1911 TATAACAGAAGAACCTGAAACAATCTTGGATTCGATCGATGGCGTCAACTCGGAGATTAT 1970 Query 1974 GAATAATTTGACTGAAGAACTTA-CTGACCAGAGACCTCTGACTACTCTGGATTCATCCA 2032 ||||| |||||||| |||| ||| ||||||||||||||||||||| ||| |||| ||||| Sbjct 1971 GAATAGTTTGACTGGAGAA-TTAACTGACCAGAGACCTCTGACTAGTCTTGATTTATCCA 2029 Query 2033 TGAAGAAATTGATTGATGAAGAAGTGGCTGATGTGAAACAAGTAGAAAATGATGATCTTT 2092 || |||| ||||| ||||||||||| |||||| || ||||| |||||||||||||||||| Sbjct 2030 TGGAGAATTTGATAGATGAAGAAGTTGCTGATATGCAACAAATAGAAAATGATGATCTTT 2089 Query 2093 GTGGATCTCCTAAGATTATTGATTTAGATATCATTGATCATCAGCAGAAAGACCAAATG- 2151 ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| | Sbjct 2090 GTGGATCTCCTAAGATTATTGATTTTGATATCATTGATCATCAGCAGACAGATCAAACGT 2149 Query 2152 CTGAGTAGCATTCAAGGAGAACATGGGGAAACTAAGAGCTTTTTGGATGCTTCTTTGGAC 2211 | || |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 2150 CGGA-TAGCATTCAAGGAGAACATGAGGAAACTAAGAGCTTCTTGGATGCTTCTTTGGAC 2208 Query 2212 ACATCCTATATAGAATCATTTGAGAGAGAGTTAGAAGGAGAAGAAGAATCAAACTTAGAC 2271 ||| ||| |||||||||||||||||||||| || ||| |||||||||||||||||||||| Sbjct 2209 ACACCCTTTATAGAATCATTTGAGAGAGAGGTACAAGAAGAAGAAGAATCAAACTTAGAC 2268 Query 2272 AAG-CTTACTAAGGAAACAACAAAACAAACAGAAAATGAGGTACATCAAAGTGATTTAGA 2330 ||| || ||| |||||||||||||| ||||||||| ||| | | ||| ||| Sbjct 2269 AAGTCT-ACTGAGGAAACAACAAAAGAAACAGAAAGTGA--T---T-----TGA---AGA 2314 Query 2331 GAGTTCTCCATGCCAAGTT-CTTACAGAATTACTAGTAAGTGAGATTATGgaagagaatg 2389 | |||||| | |||||| || ||||||||||||| ||||| | | | ||||||||||| Sbjct 2315 G--TTCTCCGGGACAAGTTTCT-ACAGAATTACTAGAAAGTGTGGTAAGGGAAGAGAATG 2371 Query 2390 gtcaggaattag--aagaaga----a-gagaaaccaagg-tcagtagaagaagagaaAAC 2441 |||||||||||| || ||| | |||||| ||| | | |||||| |||||||| || Sbjct 2372 GTCAGGAATTAGTCAA-AAGTGCTGATGAGAAAGCAATGCT-AGTAGAGGAAGAGAAGAC 2429 Query 2442 TCATAATGTGGTGGAAGAATCTTCGAGCCATGCTCATACACAGTTGGTTGA---AGATTA 2498 ||||||||| |||||| |||||||||| |||||||||||||||||||||| ||| || Sbjct 2430 TCATAATGTCTTGGAAGCATCTTCGAGCAATGCTCATACACAGTTGGTTGATTTAGACTA 2489 Query 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAAGTTCAAGATAGTAATAACTC 2558 |||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||| || Sbjct 2490 TGGAAACGCAGAAAATTCTAGTGATGTGATACTTCTGCAAGTCCAAGATAGTCATAAGTC 2549 Query 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618 |||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| Sbjct 2550 ACCACTAGATGAGTCAGTTGATCAGGAGATCTCTAAGGAAGTAGAAAAAACAGAGTTATT 2609 Query 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAA-TGCTGAGGTCT 2677 ||||||||| |||||||| | ||| |||||||||||||| ||| || ||||| || Sbjct 2610 AAAAGATTTTTGTGGTGAATCAACCCAAGAATACAAAAATAGAG-GAAATGTTGAGGCCT 2668 Query 2678 ATGGAAACGCAGAAAACGCTAGTGATGTGACATTTCTGCAAGTCCAAGATGGTAATTACT 2737 ||||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||| Sbjct 2669 GTGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACT 2728 Query 2738 CACCACGAGATGAGT 2752 |||||| |||||||| Sbjct 2729 CACCACTAGATGAGT 2743 Score = 327 bits (177), Expect = 3e-88 Identities = 251/285 (88%), Gaps = 12/285 (4%) Strand=Plus/Plus Query 2749 GAGTTATTGAAAGATTTCT-ATGATGAATCGTCCCAAGAATACAAAAATAGAGCTAATGT 2807 ||| ||||||||||||| | |||||||| || |||||| ||||||||||||||| ||||| Sbjct 2782 GAGGTATTGAAAGATTT-TAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGT 2840 Query 2808 TGAGGAAGAATCAGTAGTTTTAGCCAACACTCAAAACTCACAAGATTCACAAACATGGAC 2867 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2841 TGAGGAAGAATCAGTAGTTTTAGCTGACACTCAAAACTCACAAGATTCACAAACATGGAC 2900 Query 2868 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACGTTGGAGATCACCCA 2927 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2901 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACATTGGAGATCACCCA 2960 Query 2928 ACAACTAGAGAAAGACGATGTTATTGA-TC--C---AAATGCCATCTCTCAAGTTATTGA 2981 ||||||||| ||||||||||||||| || | ||| || ||||||||| ||| | Sbjct 2961 GCAACTAGAGCAAGACGATGTTATTGCCTCTTCCTCAAACACCGTCTCTCAAGATATCAA 3020 Query 2982 TACAGATGAATTT--GCTGCAGTAGCCAACGACGTAGCTGCTAGT 3024 || |||| | || || ||||||||||| ||| ||||||||||| Sbjct 3021 TAAAGAT-A-TTACCGCGGCAGTAGCCAATGACTTAGCTGCTAGT 3063 Score = 215 bits (116), Expect = 2e-54 Identities = 156/176 (89%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAAGTTCAAGATAGTAATAACTC 2558 |||||||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||| Sbjct 2670 TGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACTC 2729 Query 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618 |||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |||| Sbjct 2730 ACCACTAGATGAGTCAACTGATCAGGAGATTTCTAAGGAAGAAGAAAAAACAGAGGTATT 2789 Query 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAATGCTGAGG 2674 | |||||||| | | |||| | | ||| ||||||||||||||| |||| ||||| Sbjct 2790 GAAAGATTTTAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGTTGAGG 2845 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 151704835632 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5