BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342698
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 924 0.0
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 582 2e-165
AT3G19470.1 | Symbols: | F-box and associated interaction doma... 536 2e-151
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 455 4e-127
AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5... 202 6e-51
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 135 7e-31
AT4G10740.1 | Symbols: | F-box and associated interaction doma... 75.0 1e-12
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 73.1 5e-12
AT3G04250.1 | Symbols: | F-box associated ubiquitination effec... 73.1 5e-12
AT5G60560.1 | Symbols: | F-box and associated interaction doma... 67.6 2e-10
AT3G25090.1 | Symbols: | F-box associated ubiquitination effec... 67.6 2e-10
AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 67.6 2e-10
AT1G67455.1 | Symbols: | F-box and associated interaction doma... 58.4 1e-07
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 924 bits (500), Expect = 0.0
Identities = 705/800 (88%), Gaps = 29/800 (4%)
Strand=Plus/Plus
Query 1 ATGACGAAGATATCCAATCTTCCTAGAGATTTGGCGGAGGAGGTGCTCTGTAAG-ATTCC 59
||||| ||||||||||||||||| || ||||||||||| |||||||||||| || |||||
Sbjct 42 ATGACTAAGATATCCAATCTTCCAAGGGATTTGGCGGAAGAGGTGCTCTGT-AGAATTCC 100
Query 60 GTTGACATCTCTGCGAACTATCCGATCCACTTGCAAAAAGTGGAACACTTTATCCAAATA 119
|||||| |||||| ||||| | |||| ||||||||| ||||||||| |||||||||||
Sbjct 101 GTTGACGTCTCTGAGAACTGTTTGATCTTCTTGCAAAACGTGGAACACGTTATCCAAATA 160
Query 120 TGAGAGTTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAAGTAGCAG-AAAGGGAAAGAG 178
|||||| ||||||||||||||||||||||||||||||||| |||| | ||||| ||||||
Sbjct 161 TGAGAGCTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAATTAGCTGCAAAGG-AAAGAG 219
Query 179 AGTTTATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATCTTCAAA 238
|||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 220 AGTTTATGATGGTCGTGATGATGAATTTTAGGGTTTAATTGATGAGAGTCAATCTTCAAA 279
Query 239 ACAATGTTGAATCATCATGTATAAAGCGTGAAGCTGAACTTATTAGCTTAGGTGATGAAG 298
|||| |||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||
Sbjct 280 ACAAGGTTGAATCATCATGTATAAAACGTGAAGCTAAACTTATTAGTTTAGGCGATGAAG 339
Query 299 TTGATATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCAAAG 358
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 340 TTGATATATCTCAAGTCTTTCACTGCAACGGTTTATTGTTATTCATCAGCATCACCAAAG 399
Query 359 ACAAGACTAGGCTCGTGGTTTGGAACCCGTAT--T-GGGGACATACCCGGACGATCGAAC 415
||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct 400 ACAAGACTAGGCTAGTGGTTTGGAACCCGTATGATTGGGGACATACCCGTACGATCGAAC 459
Query 416 TCACACATAACTTACAGATAATCGATAG--ATA-TAT--GTATGCTCTCGGATACAACAA 470
||||||||||| || ||| || |||| ||| ||| |||||||||||||||||||||
Sbjct 460 CCACACATAACTGCCACATATTCAATAGGTATAATATATGTATGCTCTCGGATACAACAA 519
Query 471 GAGC-AGCA---AATCCCACAAAATCTTGAGGTTCATTACTTACTGGGATCCCAATTTTG 526
|||| |||| |||||||||||||||||||||| ||||||||||| || || ||
Sbjct 520 GAGCTAGCAGCTAATCCCACAAAATCTTGAGGTTTGTTACTTACTGG-ATGAGGGTTATG 578
Query 527 AA-GAGTTCAAAATCTACGATTTGAACTCTAATTCATGGAGGGTTCTTGATGTCACTCCA 585
| ||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 579 GATGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCA 638
Query 586 GACTGGACGATAAGTCATATTAACCATGGCGTGTCTCTCAAGGGAAATGCGTACTGGTTT 645
|| |||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 639 GATTGGACGATAAGTTATATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGTTT 698
Query 646 GCTAATGAGA-AGTATTCTGAAACAAGAAGAACCGACCATTTTTTCTTAGTCTGTTTTGA 704
|||| ||||| | ||||| |||||| || | || || ||||||||||||||||||
Sbjct 699 GCTACTGAGAGA-TATTCCGAAACA-GA----C-GA---TTATTTCTTAGTCTGTTTTGA 748
Query 705 TTTCACAAGAGAGACATTTGGACCGCTTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGA 764
||||||||||||||||||||| || |||||| |||||||||||| ||||| | |||||
Sbjct 749 TTTCACAAGAGAGACATTTGGGCCTCTTTTGACTCTTCCGTTTGTGTTTGTTAAATCTGA 808
Query 765 AGATGCTATGAGTGTATCTA 784
||||| |||| |||||||||
Sbjct 809 AGATGTTATGTGTGTATCTA 828
Score = 411 bits (222), Expect = 1e-113
Identities = 290/321 (90%), Gaps = 12/321 (4%)
Strand=Plus/Plus
Query 779 TATCTAGTCCGTGGGATACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCCA 838
|||| || |||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 858 TATC-AG-CCGTGGGATAAATAAAAGATGGAGATCTGGATTACGTCTACGATTGAGCCCA 915
Query 839 ACGTGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATaaaaaaaCTCATTGCCC 898
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 916 ACGCGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGCC 975
Query 899 CTCAGTTTCAGTTTTACTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 958
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CTCCGTTTCAGTTTTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 1035
Query 959 TTTTTGATAAATACTACAACGATCGGCGCAGCATAGCTTACATCATTGGAG--T--GGA- 1013
||||||||||| ||||||| ||| ||||| |||||||||||||||||||| | |||
Sbjct 1036 TTTTTGATAAAGACTACAAAGATAAGCGCAACATAGCTTACATCATTGGAGACTTTGGAG 1095
Query 1014 T-G--G-ATCCTTCAAAGCAGTGGATCTCGGAGAATCGGCATACGCAATGTGTTACCCAC 1069
| | | |||||| |||| || ||||||||||||||| || |||||||||||||||||||
Sbjct 1096 TCGATGGATCCTTTAAAGAAG-GGATCTCGGAGAATCAGCCTACGCAATGTGTTACCCAC 1154
Query 1070 TTGTGTGCTCTTATGTTCCAA 1090
|| ||||||||||||||||||
Sbjct 1155 TTATGTGCTCTTATGTTCCAA 1175
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 582 bits (315), Expect = 2e-165
Identities = 536/635 (84%), Gaps = 45/635 (7%)
Strand=Plus/Plus
Query 184 ATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATC-T--T--CAA- 237
|||||||||||||||||||||||||||||||||||||||||||| |||| | | |||
Sbjct 1 ATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTGATAACAAC 60
Query 238 -------AA-CA--AT-GT--TGA--ATCATCATGTATAAAGCGTGAAGCTGAACTTATT 282
|| || || | | | ||||||||||||||| ||||||||| || |||||
Sbjct 61 GTCGTTGAATCATCATCATCATCATCATCATCATGTATAAAACGTGAAGCTAAAGTTATT 120
Query 283 AGCTTAGGTGATGAAG-T--TGATATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTA 339
|||||||| || |||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AGCTTAGGCGACGAAGTTGATGATATATCTCAAGTCTTTCACTGCGACGGTTTATTGTTA 180
Query 340 TGCATCAGCATCACCAAAGACAAGACTAGGCTCGTGGTTTGGAACCCGTATTGGGGACAT 399
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TGCATCAGCATCACCCAAGCCAAGACTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCAT 240
Query 400 ACCCGGACGATCGAACTCACACATAACTTACAGATAA-T-CGATAGATATATGT-ATGCT 456
|||||| | ||||| | ||||||| | || || | || | ||| || ||| | | |||||
Sbjct 241 ACCCGGTCAATCGAGCCCACACATCAGTT-CA-ACAAATTCGACAGCTAT-TCTTATGCT 297
Query 457 CTCGGATACAACAAGAGCAGCAAATCCCACAAAATCTTGAGGT-TCATTACTTACTGG-G 514
||||||||| ||||||||||||||||||||||||||||||||| | ||||||| | | |
Sbjct 298 CTCGGATACGACAAGAGCAGCAAATCCCACAAAATCTTGAGGTGT-ATTACTTGTTTGAG 356
Query 515 ATCCCAATTTTGAAGAGTTCAAAATCTACGATTTGAACTCTAATTCATGGAGGGTTCTTG 574
| |||| |||| | ||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 357 ACCCCA-TTTTCATGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTC 415
Query 575 ATGTCACTCCAGACTGGACGATAAGTCA-TATTAACCA-TGGCGTGTCTCTCAAGGGAAA 632
||||||||||||||||| | || || | |||||| | |||||||||||||||||||||
Sbjct 416 ATGTCACTCCAGACTGG-CAATTAGGGACTATTAAT-AGTGGCGTGTCTCTCAAGGGAAA 473
Query 633 TGCGTACTGGTTTGCT-AATGAGAAGTATT-CTGAAACAAG--AAG-AACCGACCATTTT 687
||| | |||| ||||| || |||||||||| | |||||||| || || ||| | |||
Sbjct 474 TGCCTTCTGGGTTGCTGAA-GAGAAGTATTAC-GAAACAAGTGAAACAAACGAAGAGTTT 531
Query 688 TTCTTAGTCTGTTTTGATTTCACAAGAGAGACATTTGGACCGCTTTTGCCTCTTCCGTTT 747
|||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 532 TTCTTACTCTCTTTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTTT 591
Query 748 GAGTTTGCTGTTTCTGAAGATGCTATGAGTGTATC 782
|||||| || |||||||||||| ||||||||||
Sbjct 592 CAGTTTGTTGAATCTGAAGATGCTTTGAGTGTATC 626
Score = 420 bits (227), Expect = 2e-116
Identities = 300/334 (90%), Gaps = 9/334 (3%)
Strand=Plus/Plus
Query 779 TATCTAGTCCGTGGGATACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCCA 838
|||| || |||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 658 TATC-AG-CCGTGGGATACATTAATGATGGAGATCTGGGTCACGTCTAAGATTGAGCCCA 715
Query 839 ACGTGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATaaaaaaaCTCATTGCCC 898
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 716 ACGCGGTGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTCATTGGCC 775
Query 899 CTCAGTTTCAGTTTTACTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGG 958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 776 CTCAGTTTCAGTTTTGTTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTTG 835
Query 959 TTTTTGATAAATACTACA-ACGATCGGCGC-AGCATAGCTTACATCATTGGAGTGGATGG 1016
||||||||||| ||||| | | | |||| | |||||||||||||||||||||||||||
Sbjct 836 TTTTTGATAAAGGCTACAGAATA-CAGCGCTA-CATAGCTTACATCATTGGAGTGGATGG 893
Query 1017 ATCCTTCAAAGCAGTGGATCTCGGAGAATCGGCATACGCAATGTGTTACCCACTTGTGTG 1076
|||| | |||| ||||||||| |||||||| | | | | || |||||||||| |||||||
Sbjct 894 ATCCATGAAAGAAGTGGATCTTGGAGAATCAG-ACA-G-AAGGTGTTACCCAATTGTGTG 950
Query 1077 CTCTTATGTTCCAAGTATAGTGCAACTTAATTAG 1110
||||||||||||||| |||||||||||||||||
Sbjct 951 GTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 984
> AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6749524-6751014 FORWARD LENGTH=1388
Length=1388
Score = 536 bits (290), Expect = 2e-151
Identities = 470/551 (85%), Gaps = 35/551 (6%)
Strand=Plus/Plus
Query 249 ATCATCATGTATAAAGCGTGAAGCTGAACTTATTAGCTTA-G-G-TGATGAAGTTGATAT 305
||||||||||||||| ||||||||| |||||||||||||| | | ||| |||| ||||||
Sbjct 406 ATCATCATGTATAAAACGTGAAGCTAAACTTATTAGCTTAGGCGATGAAGAAGCTGATAT 465
Query 306 ATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAAGAC 365
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 466 ATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCGAATCCAAGAC 525
Query 366 TAGGCTCGTGGTTTGGAACCCGTATTGGGGACATACCCGGACGAT-CGAACTCACACAT- 423
||||||||| |||||||||||||||||||| ||||||||| || ||| | |||||||
Sbjct 526 TAGGCTCGTTGTTTGGAACCCGTATTGGGGGCATACCCGGTT-ATTCGAGCCCACACATC 584
Query 424 AACTTACAGATAA-T-CGATAGATATAT-GTATGCTCTCGGATACAACAAGAGCAGCAAA 480
|| || || | || | |||||| ||| | |||||||||||||||| |||||||| |||||
Sbjct 585 AA-TT-CA-ACAAATTCGATAGCTAT-TCGTATGCTCTCGGATACGACAAGAGCCGCAAA 640
Query 481 TCCCACAAAATCTTGAGGT-TCATTACTTACTGGGATCCCAATTTTGAAGAGTTCAAAAT 539
|||||||||||||||||| | ||||||| | ||||||| || ||||||
Sbjct 641 TCCCACAAAATCTTGAGGGGT-ATTACTTGTTTGGATCCC--TT----------CAAAAT 687
Query 540 CTACGATTTGAACTCTAA-TTCATGGAGGGTTCTTGATGTCACTCCAGACTGG-ACGATA 597
||||||||| |||||| | || |||||||| ||||||||| ||||| || ||| || ||
Sbjct 688 CTACGATTTTAACTCTGACTT-ATGGAGGGATCTTGATGTAACTCCGGAGTGGCACT-TA 745
Query 598 AGTCATATTAACCATGGCGTGTCTCTCAAGGGAAATGCGTACTGGTTTGCTA-ATGAGAA 656
| || || ||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 746 TGGCAAATGCTCCATGGCGTGTCTCTCAAGGGAAATGCCTACTGGTTTGCTAGA-GAGAA 804
Query 657 GTATTCTGAAACAA-GAAGAACCGACCATTTTTTCTTAGTCTGTTTTGATTTCACAAGAG 715
||| | ||||||| | | | | ||||||||||||||| ||||||||||||||||||| |
Sbjct 805 TTATACCGAAACAATGGACA-CAGACCATTTTTTCTTACTCTGTTTTGATTTCACAAGCG 863
Query 716 AGACATTTGGACCGCTTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAAGATGCTATGA 775
|||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 864 AGACATTTGGGCCGCCTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAAGATACTATGA 923
Query 776 GTGTATCTAGT 786
|||||||||||
Sbjct 924 GTGTATCTAGT 934
Score = 370 bits (200), Expect = 2e-101
Identities = 293/336 (87%), Gaps = 13/336 (4%)
Strand=Plus/Plus
Query 779 TATCTAGTCCGTGGGA-TACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCC 837
|||| || |||||||| || ||| || |||| |||||| | ||||||||||||||||||
Sbjct 962 TATC-AG-CCGTGGGATTA-TTTACAGTTGGACATCTGGGTGACGTCTAAGATTGAGCCC 1018
Query 838 AACG-TGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATaaaaaaaCTCATT-G 895
|||| | |||||||||||||||||||||||||||||||||||| ||||| ||||| | |
Sbjct 1019 AACGCT-GTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTTTAAAACAACTCGTCAG 1077
Query 896 CCCCTCAGTTTCAGTTTTACTTG-GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCT 954
||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 1078 CCC-TCAGTTTCAGTTA-ACTTTTGGGAGTTTCTTCATCGACGAGGAGAAGAAAGTCGCT 1135
Query 955 GTGGTTTTTGATAAATACTACAACGATCGGCGCAGCATAGCTTACATCATTGGAGTGGAT 1014
||||||||||||||| ||||| | || ||||| ||||||||||||| |||||||||||
Sbjct 1136 GTGGTTTTTGATAAAGACTACGATAATAAGCGCAACATAGCTTACATCTTTGGAGTGGAT 1195
Query 1015 GGATCCTTCAAAGCAGTGGATCTCGGAGAATCGGCATACGCAATGTGTTACCCACTTGTG 1074
|||||||| |||||||| ||||||||||| || | | || || ||||| |||||||||
Sbjct 1196 GGATCCTTTAAAGCAGTTGATCTCGGAGATTCAG-AC-CGAAA-GTGTTTTCCACTTGTG 1252
Query 1075 TGCTCTTATGTTCCAAGTATAGTGCAACTTAATTAG 1110
|||||||||||||||||| |||||||||||||||||
Sbjct 1253 TGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 1288
Score = 285 bits (154), Expect = 6e-76
Identities = 224/256 (88%), Gaps = 12/256 (5%)
Strand=Plus/Plus
Query 7 AAGATATCCAATCTTCCTAGAGATTTGGCGGAGGAGGTGCTCTGTAAG-ATTCCGTTGAC 65
||||| | ||||||||| ||||||||| ||||||||||||||||| || |||||||||||
Sbjct 137 AAGATGTACAATCTTCCAAGAGATTTGCCGGAGGAGGTGCTCTGT-AGAATTCCGTTGAC 195
Query 66 ATCTCTGCGAACTATCCGATCCACTTGCAAAAAGTGGAACACTTTATCCAAATATGAGAG 125
||||||| | || ||||||| |||||||||||||||| |||||||||||||| || |||
Sbjct 196 ATCTCTGAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAG 255
Query 126 TTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAAGTAGC-AG-AAAGGGAAAGAGAGTTT 183
|||||||||||| ||| | || ||||||||||||| | || | | | |||| ||||||
Sbjct 256 CTTTGCAAAGAAGCACC-T--TGCTCAAGCAAAAGTA-CTAGCAGACGCAAAG-GAGTTT 310
Query 184 ATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATCTTCAAAACAA- 242
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 311 ATGGTGGTCTTGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACAAC 370
Query 243 -T-GTTGAATCATCAT 256
| |||||||||||||
Sbjct 371 GTTGTTGAATCATCAT 386
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 455 bits (246), Expect = 4e-127
Identities = 609/774 (79%), Gaps = 66/774 (9%)
Strand=Plus/Plus
Query 1 ATGACGAAGATATCCAATCTTCCTAGA-GATTTGGCGGAGGAGGTGCTCTGTAAGATTCC 59
||||||||||| || ||||| |||| | ||||||||||| |||||||||| || | || |
Sbjct 1 ATGACGAAGATGTCTAATCTCCCTA-ATGATTTGGCGGAAGAGGTGCTCTCTAGGGTTTC 59
Query 60 GTTGACATCTCTGCG-AACTATCCGATC-CACTTGCAAAAAGTGGAACACTTTATCCAAA 117
||| ||||||||| | ||| ||||| | ||||| ||| | ||||| |||||||| |||
Sbjct 60 GTTAACATCTCTGAGAAAC-GTCCGA-CTTACTTGTAAAGATTGGAATACTTTATCTAAA 117
Query 118 TATGAGAGTTTTGCAAAGAAGT-ACCTTGGTGATCAAGCAAAAGTAGCAG-AAAGGGAAA 175
|||||| ||||||||||| | |||||||| ||||||||| |||||||| || |||||
Sbjct 118 GGTGAGAGCTTTGCAAAGAA-TCACCTTGGTTATCAAGCAATAGTAGCAGCGAA-GGAAA 175
Query 176 GAGAGTTTATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATC-TT 234
|||||||||| ||||| |||||||| ||||||||||||||||||| |||| || | ||
Sbjct 176 AAGAGTTTATGATGGTCCTGATGATGGATTTTAGGGTTTATTTGATTCGAGTCAA-CGTT 234
Query 235 CAAAACAATGTTGAATCA-TCATGTATAAAGCGTGAAGCTGAACTTATTAGCTTAGGTGA 293
| |||||| | | | || ||||| |||| ||||| ||| ||||||||||| || ||
Sbjct 235 C---ACAATG-ACATTGAGTCGTGTATTAAGCCTGAAGGTGAGCTTATTAGCTTGGGCGA 290
Query 294 TGAAGTTGATATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCA--G--CA 349
|||||| ||| ||||||||||||||||||| |||||||||||| ||||||||| | |
Sbjct 291 TGAAGTCGATGTATCTCAAGTCTTTCACTGCGACGGTTTATTGCTATGCATCACGGAAGA 350
Query 350 TCACCAAAGACAA-GACT-AGGCTCGTGGTTTGGAACCCGTATTGGGGACATACCCGGAC 407
| | | |||| || | || ||| |||| ||||||||||||||||||| || || |||
Sbjct 351 T-AACGAAGATAACG-CTAAGG-TCGTTCTTTGGAACCCGTATTGGGGGCAAACACGGTG 407
Query 408 GATCGAACTC-ACACATAACTTACAGATAA-TCGATA-GATATATGTATGCTCTCGGATA 464
||||| | || ||| |||| || || | || | || | | |||| |||||||||||||||
Sbjct 408 GATCG-AGTCTACAAATAATTTCCACA-AATTGGACATG-TATACGTATGCTCTCGGATA 464
Query 465 CAACAAGAGCAGCAAAT-----C-C--C-ACAAAATCTTGAGGTTCATT-ACTTACTGGG 514
||| ||||||||||||| | | | ||||||||||||| || ||| | || |
Sbjct 465 CAAGAAGAGCAGCAAATCAAGCCGCAGCTACAAAATCTTGAGATTTATTGA-TT--T-TT 520
Query 515 ATCCCAATT-TTGAAGAGTTCAAAATCTACGATTTGAACTCTAATTCATGGAGGGTTCTT 573
||||| || || ||||||||||||||| || | |||||| ||||||||| |||||||
Sbjct 521 CTCCCACTTGTT-CTGAGTTCAAAATCTACAATATCAACTCTGATTCATGGAAGGTTCTT 579
Query 574 GATGTCACTCCAGACTGGACGATA-AGTCATATTAACCATGGCGTGTCTCTCAAGGGAAA 632
||||| |||||||||||| |||| | || || || | |||||||||||||||||||||
Sbjct 580 GATGTGTCTCCAGACTGGAAGATAGATTCTTA-TATTCGTGGCGTGTCTCTCAAGGGAAA 638
Query 633 TGCGTACTGGTTTGCTAATGAGAAGTATTCTGAAACAAGAAGA-ACCGACCATTTTTTCT 691
| | |||||| ||||| | ||| || | | || | || | || |||| |||||
Sbjct 639 TACATACTGGATTGCT-A-GAG-AG-A----G--GCACG--GATA-CGGCCATACTTTCT 685
Query 692 TAGTCTGTTTTGATTTCACAAGAGAGACATTT-GGACCGCTTTTGCCTCTTCCG 744
||||||||||||||||||||||||||| |||| || | || ||| ||||| |||
Sbjct 686 TAGTCTGTTTTGATTTCACAAGAGAGAGATTTAGGTC-GCGTTTACCTCTGCCG 738
Score = 139 bits (75), Expect = 5e-32
Identities = 244/322 (76%), Gaps = 26/322 (8%)
Strand=Plus/Plus
Query 795 TACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCCAACGTGGTGTCGTGGAA 854
|||||| ||||| |||||||| | || | || ||||||||||| | ||||| ||||||
Sbjct 819 TACATTGGAGATGCAGATCTGGGTAACAACCAAAATTGAGCCCAATGCGGTGTTGTGGAA 878
Query 855 CAGCAAGGTGTTCTTATCAGTGAGTATaaaaaaaCTCA-TTGCCCCTCAGTTTC-AGTTT 912
|||||||||||||||| | ||| | || | ||||| || |||||||| ||||
Sbjct 879 CAGCAAGGTGTTCTTAGCTGTG-G-AT--ATGCACTCACTTAAGTTTCAGTTTCAAGTTA 934
Query 913 TA-CTTGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGAT----A 967
| ||| ||||||||| || ||||||||||||| ||| | ||| ||||||||| |
Sbjct 935 GAGCTT--CGAGTTTCTTTATCGACGAGGAGAAGAGAGTTGTTGTTGTTTTTGATAAAGA 992
Query 968 AATAC--TA--CAACGAT-C-GGCGCAGCATAGCTTACATCATTGGAGTGGATGGATCCT 1021
|| || || | || | | |||| || |||||||||| |||||||||||||| |||
Sbjct 993 AAAACGTTATTTAGCG-TCCTCTCGCAACAAAGCTTACATCGTTGGAGTGGATGGAACCT 1051
Query 1022 TCAAAGC-AGTGGATCTCGGAGA-ATCGGCATACGCAATGTG-TTACCCACTTGTGTGCT 1078
|| | |||||| || ||| | || | | || ||| || |||||||||||||||||
Sbjct 1052 GGGAA-CAAGTGGACCTTGGA-ATGTCTGTAGAC-AAATTTGTTTACCCACTTGTGTGCT 1108
Query 1079 CTTATGTTCCAAGTATAGTGCA 1100
|||||||||||||| |||||||
Sbjct 1109 CTTATGTTCCAAGTTTAGTGCA 1130
> AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5955444
FORWARD LENGTH=558
Length=558
Score = 202 bits (109), Expect = 6e-51
Identities = 309/401 (77%), Gaps = 31/401 (8%)
Strand=Plus/Plus
Query 13 TCCAATCTTCCTAGAGATTTGGCGGAGGAGGTGCTCTGTAAGATTCCGTTGACATCTCTG 72
||| ||||||| || |||||||| |||||||| || | |||||||||| |||||||||||
Sbjct 13 TCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAAGATTCCGGTGACATCTCTG 72
Query 73 CGAACTATCCGATCCACTTGCAAAAAGTGGAACACTTTATCCAAATAT-GAGAGTTTTGC 131
|| || || | |||||||||||||||||||||||||||||| || | ||| ||| |
Sbjct 73 AGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATCG-GAGCTTTAC 131
Query 132 AAAGAAGTACCTTGGTGATCAAGCAAAAGTAGCAGAAAGGGAAAGAGAGTTTATGGTGGT 191
|| ||| |||||| | ||||| |||| ||| | | | || | ||||||||||||||
Sbjct 132 AAGGAAACACCTTGCT---CAAGCCAAAGCAGCGGCA-GC-AAGG-GAGTTTATGGTGGT 185
Query 192 CATGATGATGAATTTT-AGGGTTTATTTGATGAG-AGTTAATCTTCAAAACAATGTTGAA 249
|||| ||||| ||||| ||| ||||||||||| | | | ||||| || || | |||||
Sbjct 186 CATGGTGATGGATTTTCAGG-TTTATTTGATGGGCA-TCAATCTCCATAAGGACGTTGAC 243
Query 250 TCATCATGTATAAAGCG-TGAAGCTGAACTTATTAGCTTAG--G-TG--A-TGAAGTTGA 302
|| | | ||||| || | ||| | ||||||||||||||| | | | | |||| ||
Sbjct 244 GCAAC-T--ATAAA-CGGTCAAGGTAAACTTATTAGCTTAGACGATTCCAATCAAGTCGA 299
Query 303 TATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAA 362
||||||| | |||| |||||| ||| ||||| | ||||||||| | || ||||||
Sbjct 300 TATATCTTACGTCTATCACTGCGACAGTTTAGTCTTATGCATC--C--CA--AAAGACTG 353
Query 363 -GACTAGGCTCGTGGTTTGGAACCCGTATTGGGGACATACC 402
| ||||||| || |||||||| ||||||||||| || |||
Sbjct 354 CG-CTAGGCTTGTTGTTTGGAATCCGTATTGGGGCCAAACC 393
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 135 bits (73), Expect = 7e-31
Identities = 235/309 (76%), Gaps = 28/309 (9%)
Strand=Plus/Plus
Query 804 GATGGAGATCTGGATTACGTCTAAGATTGAGCCCAACGTGGTGTCGTGGAACAGCAAGGT 863
||||||||| ||| ||||| ||||||||||||| || | ||| || ||| | | |||| |
Sbjct 870 GATGGAGATTTGGGTTACGACTAAGATTGAGCCTAAGGAGGTCTCATGG-A-A-CAAGTT 926
Query 864 GTTCTTATCAG-TGAGTATaaaaaaaCTCATTGCCCCT-CAGTTTCAG-TTT-TACTTGG 919
||||||| | | ||| ||| | | ||| | | | || | |||||| ||| || | |
Sbjct 927 GTTCTTAGCGGTTGA-TATGATACCACTGA-T--CACTGC-TTTTCAGTTTTGTA-AT-G 979
Query 920 GGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCT-GTGGTTTTTGATAAATACTACAAC 978
|||||| |||||||||||| ||||||| |||| | |||||| ||| |||| | |
Sbjct 980 TGAGTTTTTTCATTGACGAGAAGAAGAATGTCG-TCGTGGTTCTTGGTAAAGA-TGTGTT 1037
Query 979 G-AT-CGGCGCAGCATAGCTTACATCATTGG-AGTGGATGGATCCTTCAAAGC-AGTGGA 1034
| || | || | ||||||| | || ||||| | | ||||||| ||| ||| | ||||||
Sbjct 1038 GAATAC-ACGAAACATAGCTAATATTATTGGAAAT-GATGGATACTTTAAA-CAAGTGGA 1094
Query 1035 TCTCGGAGAATCGGCATACGCAAT-GTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTA 1093
||| |||||||| || || ||| |||||||||||||||||||||||||||||||||
Sbjct 1095 TCTTGGAGAATCTACAAAC-AAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGT- 1152
Query 1094 T-AGTGCAA 1101
| |||||||
Sbjct 1153 TCAGTGCAA 1161
> AT4G10740.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:6617143-6618426 REVERSE LENGTH=1284
Length=1284
Score = 75.0 bits (40), Expect = 1e-12
Identities = 145/193 (75%), Gaps = 18/193 (9%)
Strand=Plus/Plus
Query 921 GAGTTTCTTCATTGACGA-GGAGAAGAAAGTCGCTGTGGTTTTTGAT----AAATACTAC 975
|||||||||||||||| | |||||||||||| ||| ||||||||||| ||| | |
Sbjct 1002 GAGTTTCTTCATTGAC-ATGGAGAAGAAAGTTGCTATGGTTTTTGATAAAGAAAAAGGAA 1060
Query 976 AACGA-TCG-GCGCAGCA-TAGCTT-ACATCATTGGAGTGGATGGATCCTTCAAAG-CAG 1030
|| | ||| | || || || || | |||||||||| || ||||| | | | | |
Sbjct 1061 AAAAAGTCGCTCACAACATTA--TTAATATCATTGGAGAGGCTGGATGCGT-GAGGAAAT 1117
Query 1031 TGGATCTCGGAGAATC-GGCATACGCAATG-TGTTACCCACTTGTGTGCTCTTATGTTCC 1088
||| ||| |||||| || | || || | |||| |||||||||||||||||||||||
Sbjct 1118 TGGTTCTTAAAGAATCTGG-AGAC-AAAAGCTGTTGGCCACTTGTGTGCTCTTATGTTCC 1175
Query 1089 AAGTATAGTGCAA 1101
||||| |||||||
Sbjct 1176 AAGTACAGTGCAA 1188
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 73.1 bits (39), Expect = 5e-12
Identities = 142/188 (76%), Gaps = 22/188 (12%)
Strand=Plus/Plus
Query 922 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGT-GGTTTTTGATAAATACTACAACGA 980
|||||||||||||||||||||||||||||||| | |||||| || | || | | ||
Sbjct 430 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTT-GA-AGATGGGA-ATCG- 485
Query 981 TCGGCGCAGCATAGCTTA-CATCATTGGAGTGGATGGATCCTTCAAAGCAGTGGATCTCG 1039
| | || || | ||| ||||||||||| || ||||| ||| | ||| |||||||||
Sbjct 486 -C--CACA-CA-A--TTAACATCATTGGAGAGGCTGGATACTTGAGGGCATTGGATCTCG 538
Query 1040 --G-AGA--ATCGGCATACGCAATG-TGTTACCCACTTGTGTGCTCTTATGTTCCAAGTA 1093
| ||| || || | || ||| | ||| | || | ||||||||||||||||||||
Sbjct 539 TTGGAGATTAT-GG-AGAC-CAAAGATGTAAGACAGATCTGTGCTCTTATGTTCCAAGTT 595
Query 1094 TAGTGCAA 1101
||||||||
Sbjct 596 TAGTGCAA 603
> AT3G04250.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:1121950-1122828 FORWARD LENGTH=879
Length=879
Score = 73.1 bits (39), Expect = 5e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 919 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGAT 966
||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 538 GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCTCCATGGTTTTTGAT 585
> AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 922 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 960
|||||||||||||||||||||||||||||||| ||||||
Sbjct 934 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTT 972
> AT3G25090.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:9140039-9141094 REVERSE LENGTH=978
Length=978
Score = 67.6 bits (36), Expect = 2e-10
Identities = 43/46 (93%), Gaps = 2/46 (4%)
Strand=Plus/Plus
Query 922 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGC-TGTGGTTTTTGAT 966
|||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 742 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCTTTGGTTTT-GAT 786
> AT2G28280.1 | Symbols: | pseudogene, hypothetical protein |
chr2:12054736-12056452 REVERSE LENGTH=1717
Length=1717
Score = 67.6 bits (36), Expect = 2e-10
Identities = 154/205 (75%), Gaps = 31/205 (15%)
Strand=Plus/Plus
Query 920 GGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGAT--A-A-ATACT-- 973
||||||||||| |||||||||||||||| ||||| || ||| ||||| | | ||| |
Sbjct 1365 GGAGTTTCTTCGTTGACGAGGAGAAGAAGGTCGCGGTTGTTCTTGATAAAGAGATAATAG 1424
Query 974 AC-AACG--A---T--CG-GCGCAGCATAGCTTACATCATTGG-AGTGGATGG-ATCCTT 1022
|| || | | | || |||| || |||||||||||||| | | |||| || |||
Sbjct 1425 ACAAATGTCACCTTCCCGCTCGCAATATTGCTTACATCATTGGAAAT-AATGGAAT-CTT 1482
Query 1023 CA--AAGCAGTGGATCTCGGAGAATCGGCATACG-CAA--TGTGTTACCCACTTGTGTGC 1077
| || ||||||||| || ||||| | | | ||| | ||||||||||||||||||
Sbjct 1483 GAGTAA--AGTGGATCTTGGCGAATC--TAGA-GACAAGTTTTGTTACCCACTTGTGTGC 1537
Query 1078 TCTTATGTTCCAAG-TATAGTGCAA 1101
|||||||||||||| | |||||||
Sbjct 1538 TCTTATGTTCCAAGCTC-AGTGCAA 1561
> AT1G67455.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:25268145-25269475 FORWARD LENGTH=651
Length=651
Score = 58.4 bits (31), Expect = 1e-07
Identities = 36/38 (95%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 360 CAAGACTAGGCTCGTGGTTTGGAACCCGTATT-GGGGA 396
||| |||||||||||||||||||||||||||| |||||
Sbjct 174 CAACACTAGGCTCGTGGTTTGGAACCCGTATTTGGGGA 211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5