BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342706
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25280.1 | Symbols: | Major facilitator superfamily protein... 2505 0.0
> AT3G25280.1 | Symbols: | Major facilitator superfamily protein
| chr3:9206183-9208036 FORWARD LENGTH=1566
Length=1566
Score = 2505 bits (1356), Expect = 0.0
Identities = 1499/1569 (96%), Gaps = 6/1569 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATGAGATGGAGGATAAGTTTGAAAATTGGAAAGGTAAAGAGGCAATCTCTGGC 60
||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| | ||
Sbjct 1 ATGGAGAATGATATGGAAGAGAAGTTTGAAGATTGGAAAGGTAAAGAGGCAATCCCAGGG 60
Query 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACATGGTGGGATCAGAGCTGCATCTATTGTTTGTGTTGTGGTGATGATGGAGAACATA 120
Query 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATACTTCATGGGATCGATGCATTATTCA 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 121 GTGTTCATAGCTAATGGATTCAATTTCGTGAAATATTTCATGGGATCAATGCATTATACA 180
Query 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAGCCACAGCAGCAAACATGGTCACTAATTTCATGGGAACATCGTTTTTACTCACTCTT 240
Query 241 TTTGGTGGTTTTATCGCTGACTCTTTCCTCACTCATTTCACAACTTTCATCATCTTCTGT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 241 TTTGGTGGTTTTATCGCTGACTCTTTCGTCACTCATTTCACAACTTTCATCGTCTTCTGT 300
Query 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGCTACTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 TGCATTGAACTCATGGGATTGATCTTGTTGACGTTCCAAGCTCATAACCCTAAGTTACTG 360
Query 361 CCCGAGAAAGGTAAAACACCTTCAACTCTTCAATCAACGATTCTTTTCACAGGACTCTAT 420
|| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 CCTGAAAAAGATAAAACACCTTCAACTCTTCAATCAGCGATTCTTTTCACAGGACTCTAC 420
Query 421 GCGATGGCTACTGGTACGGGCGGTATAAAGGCCTCGTTGCCCACTCACGGAGGCGATCAA 480
|| ||||||| ||||||||||||| ||||||| |||||||| | ||| ||||||||||||
Sbjct 421 GCAATGGCTATTGGTACGGGCGGTTTAAAGGCATCGTTGCCTAGTCATGGAGGCGATCAA 480
Query 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTTGATTGGTTATACTTCTCTATA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 ATTGATAGAAGAAATCCAAGACTGATCTCAAGATTCTTCGATTGGTTATACTTCTCTATA 540
Query 541 TGCTTTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTTGATCGAGGAAAAGAAAGGGTGG 600
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TGCTCTGGATGCCTCTTGGCCGTAACCGTTGTGTTGTGGATCGAGGAAAAGAAAGGGTGG 600
Query 601 A-AGTGGAGCTTCAATATATCGGTTGGGATTCTAGCGACTGCGCTTTGTATTTTTACGGT 659
| | ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 601 ATA-TGGAGCTTCAATATATCCGTTGGAATTCTAGCGACGGCGCTGTGTATTTTTACTGT 659
Query 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGGCTACCGTTTTATCGGTTCAAGCGTCCTAATGGAAGTCCGTTGAAAAAGATTGCAAT 719
Query 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAGATCTGATTTGGATGAAGAGATGATGCG 779
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 TGTGATTATTTCTGCCGCAAGAAACCGAAATAAATCTGATTTGGATGAAGAGATGATGCG 779
Query 780 AAGTCTTATCCCT-TTTGACAAGAACATTGGTCACAACAAGTTAAAGTGGATAGATAAAG 838
| |||||||| || | | ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 780 AGGTCTTATCTCTATCT-ACAAGAACAATAGTCACAACAAGTTAAAGTGGATAGATAAAG 838
Query 839 CAATGTTGAACAAAAACATCTCAGAAACAGAAGTTGAGGAAACAAGAACGTTTTTGGGTC 898
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 CAACGTTGAACAAAAACATCTCAGAAACAGAAGTTGAAGAAACAAGAACGTTTTTGGGTC 898
Query 899 TTTTACCAATCTTTGGTAGCACAATTGTCATGAGCTGTTGCGTGGCACAACTATCTACCT 958
|| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 899 TTCTACCAATCTTTGGTAGCACAATTGTCATGAGCTGCTGCGTGGCACAACTCTCTACCT 958
Query 959 TCTCTGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCTCCGCACAACAAGGAATGCTCATGAACAAGAAACTCTTTCACTCTTTCGAGATCCCCG 1018
Query 1019 TACCTTCCCTCAACGCCATTCCTCTCATCTTCATGCTCTTTTCTATACCTTTATACGAAT 1078
||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 TACCTTCTCTCACCGCCATTCCTCTCATCTTCATGCTCTTATCTATACCTTTATACGAAT 1078
Query 1079 TCTTTGGAAAAAGGATCTCATTAGGCAGCAACAATAGATCATCTAGTTTCAATTTGAAAC 1138
|||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1079 TCTTTGGAAAAAAGATCTCATCAGGCAACAACAATAGATCATCCAGTTTCAATTTGAAAC 1138
Query 1139 GCATTGGACTCGGCCTAGCTCTCTCCTCTGTTTCGATGGCGGTTGCTGCCATCGTTGAGG 1198
||||||||||||||||||||||||| || ||||| ||||||||| |||||||||| ||||
Sbjct 1139 GCATTGGACTCGGCCTAGCTCTCTCTTCGGTTTCAATGGCGGTTTCTGCCATCGTAGAGG 1198
Query 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CCAAGAGGAAACATGAAGTGGTTCATAACAACTTCAGAATCTCTGTTTTGTGGCTAGTGT 1258
Query 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTCAGTATCTGATGCTAAGTGTCTCTGATATGTTGACTTTAGGAGGGATGCTAGAGTTCT 1318
Query 1319 TCTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTTATAGAGAAGCTCCGTCGAACATGAAGAGCATAAGCACGGCTTTGGGATGGTGTTCAA 1378
Query 1379 CCGCATTCGGTTTCTT-CGTTAGCACAACTCTTGTGGAGGTCACAAATGCCGTCACCGGA 1437
||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1379 CCGCATTAGGTTTCTTTC-TTAGCACAACTCTTGTAGAGGTTACAAATGCCGTCACGGGA 1437
Query 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGGCAAGGCTTGAACTTTTT 1497
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1438 AGGCTTGGCCATCAATGGCTTGGTGGGGAAGATCTCAACAAGACAAGGCTTGAACTTTTT 1497
Query 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTTAACTATATTTTTTGGGCAAAG 1557
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1498 TATGTGCTCTTGTGTGTTCTTAATACTCTTAATCTTCTGAACTATATTTTTTGGGCAAAG 1557
Query 1558 AGATATTAA 1566
|||||||||
Sbjct 1558 AGATATTAA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5