BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342715
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25460.1 | Symbols: | F-box and associated interaction doma... 383 2e-105
> AT3G25460.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:9231581-9232666 REVERSE LENGTH=1086
Length=1086
Score = 383 bits (207), Expect = 2e-105
Identities = 377/455 (83%), Gaps = 28/455 (6%)
Strand=Plus/Plus
Query 417 TACTAGCCTCGTGGTGTGGAACCCGTGTACCGGTCAAACCAAGTGGATCCAACACAGAAA 476
|||||| |||||||| |||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 348 TACTAGGCTCGTGGTATGGAACCCGTGTACTGGTAAAACCAAGTGGATTCAACACAGAAG 407
Query 477 GCTTTGCTACATCTGTACCTATGCTCTTGGTTCTTACCAAGACAACAAATCTGGCAATAA 536
| | |||||||||| | |||||||||||| || ||||||||||| ||||| | ||||||
Sbjct 408 GATGGGCTACATCTGCAACTATGCTCTTGGATCCTACCAAGACAAAAAATCCGACAATAA 467
Query 537 GAGCTACAAAATATTGAGCCGCAGGTTTTATGGTCACCAAGACCCAGAATTCGAAATTTA 596
||||||||||||||||||| | || |||||||| ||||| || |||||||||||
Sbjct 468 TAGCTACAAAATATTGAGCCACGGGATTTATGGTGGCCAAG----AG--TTCGAAATTTA 521
Query 597 TGAGATTAACTCGAATTCATGGAGGAGGATCCTTGATGTCAATGTGGACTGCACCGATAT 656
|||||||||||| ||||||| ||||||| |||||||||| |||||||| || | |
Sbjct 522 TGAGATTAACTCAAATTCAT---GGAGGATTCTTGATGTCACTGTGGACT---CCTCTTT 575
Query 657 GTACATTCG-GAACGTGTCTTTGAAAGGAAAGACTTACTGGTTTGCTACAGATGAAAAAG 715
||||||| | ||||| |||||||| || ||||||||||||||||||||||||| ||| |
Sbjct 576 GTACATT-GAAAACGTTTCTTTGAAGGGTAAGACTTACTGGTTTGCTACAGATGGAAATG 634
Query 716 AGAAACAAC-T-CGGCTTATTCTTAATCAGTTTTGATCATACAACAGAAAGATTTGAACG 773
| |||| | | || | ||||||| ||| |||||||| |||| |||||||||||||||||
Sbjct 635 ATAAAC--CGTGCGACCTATTCTTGATCTGTTTTGATTATACGACAGAAAGATTTGAACG 692
Query 774 TCTATGTCTACCTTATCCGCA-TCCATATCATGGTT-ATCAAAACGAGTATCTATCTGTT 831
||||||||| || |||| | | ||| ||| | || | || || | | |||||| |||
Sbjct 693 TCTATGTCTTCCGTATCAG-ATTCCGTAT--T--TTCGT-AATAC-A-TCTCTATCAGTT 744
Query 832 GTTAGAGAAGAGAAACTTTCCGTGTTATTACAACC 866
|||| ||||||||||||||||||||||||||||||
Sbjct 745 GTTAAAGAAGAGAAACTTTCCGTGTTATTACAACC 779
Score = 141 bits (76), Expect = 1e-32
Identities = 110/126 (87%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 1 ATGTGGAATG-AGTTAGGGGTTTATTCGATGAGCATCAATCTACATAGAGTTTCACCTAT 59
|||||||| | | || || ||| |||||| ||||||||||| || ||||||||||||||
Sbjct 172 ATGTGGAA-GAATTTTGGTTTTTCTTCGATTAGCATCAATCTCCAAAGAGTTTCACCTAT 230
Query 60 AGAGGTCACTGGTGAACTTAACCTAATCGACCCTCATTCTAGTTTAGATCA-GTTCGGGA 118
|||||||||||||||||||||||||||||||| |||||||||||||| | | |||| |||
Sbjct 231 AGAGGTCACTGGTGAACTTAACCTAATCGACCATCATTCTAGTTTAGGT-ATGTTCAGGA 289
Query 119 CCTCTC 124
|||||
Sbjct 290 ACTCTC 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5