BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342718
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60840.1 | Symbols: | unknown protein; Has 361 Blast hits t... 743 0.0
AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper ... 65.8 5e-10
> AT5G60840.1 | Symbols: | unknown protein; Has 361 Blast hits
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes
- 62 (source: NCBI BLink). | chr5:24473319-24474491
REVERSE LENGTH=815
Length=815
Score = 743 bits (402), Expect = 0.0
Identities = 512/563 (91%), Gaps = 16/563 (3%)
Strand=Plus/Plus
Query 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
Query 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
Query 126 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
Query 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
Query 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
Query 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCACGTTGGTA 365
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
Query 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCg---aagaagaagaag- 421
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTGAAGAAGAAGAAGT 499
Query 422 atga-a-gtagaagaaatggaagaagtagaagaggttgaagaagaagttgaagtaggaga 479
| || | ||||||||||||||||| ||||||||||||||||||||||| || | | | |
Sbjct 500 AGGAGAAGTAGAAGAAATGGAAGAGGTAGAAGAGGTTGAAGAAGAAGTAGA--T-G-A-A 554
Query 480 agtagaagaagtagaagaagaacaagaagaGGTCATTGATTCAGCTT-TGCAGAGATACC 538
|||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 555 -GTAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCTGCAGAGATACC 613
Query 539 CAATGGTGAAATCCCCAATGGAG 561
|||||||||||| |||||||||
Sbjct 614 AAATGGTGAAATCTCCAATGGAG 636
> AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper
70 | chr5:24472639-24473319 FORWARD LENGTH=621
Length=621
Score = 65.8 bits (35), Expect = 5e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Minus
Query 560 AGCTCTTCGATCTGCTTCTTTTTGCGCATACGTGA 594
|||||||||||||||||||||||||||||||||||
Sbjct 290 AGCTCTTCGATCTGCTTCTTTTTGCGCATACGTGA 256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5