BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342720
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60840.1 | Symbols: | unknown protein; Has 361 Blast hits t... 710 0.0
AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper ... 102 4e-21
> AT5G60840.1 | Symbols: | unknown protein; Has 361 Blast hits
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes
- 62 (source: NCBI BLink). | chr5:24473319-24474491
REVERSE LENGTH=815
Length=815
Score = 710 bits (384), Expect = 0.0
Identities = 510/569 (90%), Gaps = 15/569 (3%)
Strand=Plus/Plus
Query 9 CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA 68
|||| || |||||||||||||||||| |||||||||||||||||| |||| || || ||
Sbjct 80 CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA 139
Query 69 GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT 125
|| |||| || | |||||||| ||||| ||||||||||||||||| | ||||| ||||
Sbjct 140 GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT 199
Query 126 TACGATGATGGATATTGTGAATAGCAATGGAATTTTAACAGATCAATTGGTTGACGAAGA 185
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 200 TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA 259
Query 186 ACCATCTTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGA 245
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 260 CCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGA 319
Query 246 AGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAATATGAGGA 305
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 320 AGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGA 379
Query 306 GACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCATGTGCACGTTGGTA 365
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 380 GACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTA 439
Query 366 TGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCATCgaagaagaagaagatga 425
|||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |
Sbjct 440 TGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTGAAGAAGAAGA--A 497
Query 426 agtagaagaaatggaagaagtagaagaggttgaagaagaagttgaagaagtaggagaagt 485
|||| |||| | |||||| | |||||||| ||||| | |||||||||| || ||| |
Sbjct 498 -GTAGGAGAAGTAGAAGAAATGGAAGAGGTAGAAGA-G--GTTGAAGAAGAAGTAGA--T 551
Query 486 aggagaggtagaagaagtagaagaagaacaagaagaggTCATTGATTCAGCTTCTGCAGA 545
| | || ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 552 -G-A-AG-TAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCTGCAGA 607
Query 546 GATACCCAATGGTGAAATCCCCAATGGAG 574
|||||| |||||||||||| |||||||||
Sbjct 608 GATACCAAATGGTGAAATCTCCAATGGAG 636
> AT5G60830.1 | Symbols: AtbZIP70, bZIP70 | basic leucine-zipper
70 | chr5:24472639-24473319 FORWARD LENGTH=621
Length=621
Score = 102 bits (55), Expect = 4e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 573 AGCTCTTCGATCTGCTTCTTTTTGCGCATACGTGACCTTCTTGCAGATTCCCGGTTAG 630
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 290 AGCTCTTCGATCTGCTTCTTTTTGCGCATACGTGACCTCCTTGCAGATTCCCGGTTAG 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5