BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342721

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits t...   590    7e-168


> AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits 
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa 
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes 
- 62 (source: NCBI BLink). | chr5:24473319-24474491 
REVERSE LENGTH=815
Length=815

 Score =  590 bits (319),  Expect = 7e-168
 Identities = 393/426 (92%), Gaps = 15/426 (4%)
 Strand=Plus/Plus

Query  244  TATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAAGATACGAAGCTGACTTTAGGAAG  303
            |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct  276  TATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAAGCTACGAAGCTGATTTTAGAAAG  335

Query  304  TATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGAGACAACAACAATTGAT  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  336  TATCTCATGGATAAGCACTTCTCTGAAGTGGATGAATATGAGGAGACAACAACAATTGAT  395

Query  364  GGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCACGTTGGTATGCAGACCCGGATGCT  423
            ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  396  GGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCACGTTGGTATGCAGACCCGGATGCT  455

Query  424  TCGTTTCTAGACCCGCCACAATGCATCg---aagaagaagaag-atga-a-gtagaagaa  477
            |||||| ||||||||||||||||||| |   |||||||||||| | || | |||||||||
Sbjct  456  TCGTTTGTAGACCCGCCACAATGCATTGTTGAAGAAGAAGAAGTAGGAGAAGTAGAAGAA  515

Query  478  atggaagaagtagaagaggttgaagaagaagttgaagaagtaggagaagtagaagaagta  537
            |||||||| |||||||||||||||||||||||  | ||  | | | | |||| |||||||
Sbjct  516  ATGGAAGAGGTAGAAGAGGTTGAAGAAGAAGT--A-GA--T-G-A-A-GTAGGAGAAGTA  566

Query  538  gaagaagaacaagaagaGGTCATTGATTCAGCTTCTGCAGAGATACCCAATGGTGAAATC  597
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  567  GAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCTGCAGAGATACCAAATGGTGAAATC  626

Query  598  CCCAATGGAGGTACTGTCTTAGAGGACACTTGTGATGTTGGCAAGAAACCAGATATGCCC  657
             ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||
Sbjct  627  TCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGAGAAACCAGATTTTCCC  686

Query  658  ATTTAG  663
            ||||||
Sbjct  687  ATTTAG  692


 Score =  235 bits (127),  Expect = 4e-61
 Identities = 173/195 (89%), Gaps = 4/195 (2%)
 Strand=Plus/Plus

Query  9    CGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCCGCATGA  68
            |||| || |||||||||||||||||| ||||||||||||||||||  |||| || || ||
Sbjct  80   CGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACCACAGGA  139

Query  69   GATTCCAGTCATCTCTGAACTCATTTCCGCCGCTCCTCCCTCTCCG--G-CGCCACAAAT  125
            ||  |||| || | |||||||| ||||| |||||||||||||||||  | ||||| ||||
Sbjct  140  GAAGCCAGGCAACGCTGAACTCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGCCAAAAAT  199

Query  126  TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGACGAAGA  185
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  200  TACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTGATGAAGA  259

Query  186  ACCATCTTTT-ACAA  199
             ||||||||| ||||
Sbjct  260  CCCATCTTTTTACAA  274



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32049385786


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5