BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342735
Length=2751
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14610.1 | Symbols: TWN2, VALRS | valyl-tRNA synthetase / va... 1072 0.0
AT1G27160.1 | Symbols: | valyl-tRNA synthetase / valine--tRNA ... 804 0.0
> AT1G14610.1 | Symbols: TWN2, VALRS | valyl-tRNA synthetase /
valine--tRNA ligase (VALRS) | chr1:5008244-5014533 REVERSE LENGTH=3632
Length=3632
Score = 1072 bits (580), Expect = 0.0
Identities = 1101/1347 (82%), Gaps = 57/1347 (4%)
Strand=Plus/Plus
Query 1423 AAC-GAGGAAGATGCTCAAAAAGAGGCTGCACAAAAATTTTCT-GGGAAGAAGTTGTTGG 1480
||| ||||| ||||||| | |||||||||| || ||||||| | ||||||||| | || |
Sbjct 1826 AACTGAGGACGATGCTCGAGAAGAGGCTGCTCAGAAATTTT-TGGGGAAGAAG-T-TT-G 1881
Query 1481 AGCTCTCCCAAGATCCTGATGTGCTTGACACTTGGTTTTCCTCTGGTCTCTTTCCCTTAT 1540
| ||| | | |||||||||||| ||||| || |||||||| ||||| |||||||| ||||
Sbjct 1882 AACTCACTCGAGATCCTGATGTACTTGATACATGGTTTTCTTCTGGGCTCTTTCCATTAT 1941
Query 1541 CTGTTTTGGGATGGCCTGATGAAACCGAGGACTTCAAAGCTTTCTATCCAGCGTCTGTTC 1600
||||| |||||||||| |||| |||||| ||||||||||| ||||||||| | |||||||
Sbjct 1942 CTGTTCTGGGATGGCCAGATGTAACCGATGACTTCAAAGCCTTCTATCCAACTTCTGTTC 2001
Query 1601 TTGAAACTGGACATGACATTCTGTTTTTCTGGGTTGCTCGCATGGTTATGTTAGGAATGA 1660
|||||||||||||||| || || ||||| ||||||||||| ||||||||| | |||||||
Sbjct 2002 TTGAAACTGGACATGATATCCTCTTTTTTTGGGTTGCTCGTATGGTTATGATGGGAATGA 2061
Query 1661 AAGTGGGTGGTGGGGATGTTCCTTTCAGGAAGGtttttttGCATCCCATGATACGTGATG 1720
|| | |||||| || ||||| ||||| ||||||| ||| ||||| |||||||||||||
Sbjct 2062 AACTAGGTGGT---GAGGTTCCATTCAGTAAGGTTTATTTCCATCCTATGATACGTGATG 2118
Query 1721 CACATGGCCGCAAGATGTCAAAGTCTCTTGGAAATGGCATTGATCCGCTTGAAGTCATTA 1780
||||||| || || |||||||| ||||||||||||| ||||||||| |||||||| || |
Sbjct 2119 CACATGGGCGTAAAATGTCAAAATCTCTTGGAAATGTCATTGATCCACTTGAAGTAATAA 2178
Query 1781 ACGGTGTAACTCTCGCAGGTCTACACGCCAGGTTAGAAGAAGGTAACCTGGATCCCAAGG 1840
|||| |||||||| | |||||| || || |||||||| |||||| ||||||| || |
Sbjct 2179 ACGGAGTAACTCTTGAAGGTCTTCATAAGAGATTAGAAGAGGGTAACTTGGATCCAAAAG 2238
Query 1841 AGCTGGTTGTTGCCAAGGAGGGACAGGTGAAGGATTTTCCAAATGGTATCCCTGAATGTG 1900
|| || |||||||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 2239 AGGTGATTGTTGCCAAAGAAGGACAAGTGAAGGACTTTCCAAATGGTATCCCTGAATGTG 2298
Query 1901 GCGCTGACTCTCTTCGATTTGCCCTTGTATCTTACACGGCCCAGTCTGATAAAATCAACA 1960
|| ||||| ||||||| ||||| || || |||||||| || |||||||||||||| |||
Sbjct 2299 GCACTGACGCTCTTCGGTTTGCGCTCGTCTCTTACACTGCTCAGTCTGATAAAATTAACT 2358
Query 1961 TGGATGTCCTCCGAGTTGTTGGTTACCGCCAGTGGTGTAATAAACTGTGGAACGCCGTCA 2020
|||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2359 TGGACATTCTTCGAGTTGTTGGTTACCGTCAATGGTGTAATAAACTGTGGAACGCCGTCA 2418
Query 2021 GATTTGCGATGATGAAGCTTGGTGATGGCTATACTCCTCCTTCACAAGCTCTAAGCCCT- 2079
||||||| |||||||||||||| ||||| ||||||||||| || | ||||||| |||
Sbjct 2419 GATTTGCAATGATGAAGCTTGGCGATGGTTATACTCCTCCG-CAGA--CTCTAAGTCCTG 2475
Query 2080 AGAGCCATGCCCTTCAGCTGCCAATGGATCCTCTCTGTACTAAATAAGGCAATATCTAAG 2139
| | ||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 2476 AAA-CCATGCCTTTCAGCTGCCAATGGATTCTCTCTGTTCTAAATAAGGCAATATCAAAG 2534
Query 2140 ACAGTGGAT-TC-CTTGAATGCTTTTGAGTTATCGGATGCAGCCAACACGGTGTATGCCT 2197
||||||| | || || || ||| |||||||| ||||||||||||||||| | ||||| |
Sbjct 2535 ACAGTGG-TGTCACTAGA-TGCATTTGAGTTCTCGGATGCAGCCAACACAATATATGCAT 2592
Query 2198 GGTGGCAATACCAATTCTGTGATGTATTTATCGAAGCAGTTAAGCCTTATTTTTCTGCTG 2257
||||||||||||||||||||||||| | || |||||| |||||||||||||| ||| ||
Sbjct 2593 GGTGGCAATACCAATTCTGTGATGTGTACATTGAAGCAATTAAGCCTTATTTTGCTGGTG 2652
Query 2258 AAAACCCA--G---GC---AG-GAC--C-CATGCACAAGACGCTCTCTGGGTGTGTCTCG 2305
| |||||| | || || || | ||||||||| | ||||||||| | |||| |
Sbjct 2653 ACAACCCAACGTTTGCTTCAGAGAGGGCTCATGCACAACATGCTCTCTGGATAAGTCTGG 2712
Query 2306 AGACTGGCTTGCGATTGCTGCATCCGTTTATGCCTTTTGTAACAGAAGAGCTGTGGCAGC 2365
||||||| ||| || |||| || || |||||||||||||| || |||||||| ||||| |
Sbjct 2713 AGACTGGTTTGAGACTGCTTCACCCATTTATGCCTTTTGTTACTGAAGAGCTATGGCAAC 2772
Query 2366 GG-TTGCCGTCACCGCAA-GACTGTGAACGGAAGGCGTCTATCATGATATGTGACTACCC 2423
| || ||| |||| ||| ||| ||| | ||||| |||||||||||||||||||||||
Sbjct 2773 GACTTCCCG-CACC-CAAAGACACAGAAAGAAAGGCTTCTATCATGATATGTGACTACCC 2830
Query 2424 TTCTCCCGA-AGAGAAGTGGACAAATGAGAAGGTGGAGACCGAAATGGACGTGGTTCTGG 2482
||| || | |||||| ||| |||||||||| ||||||| |||||||||| |||||||
Sbjct 2831 ATCTGCC-ATAGAGAACTGGTCAAATGAGAAAGTGGAGAGCGAAATGGACACCGTTCTGG 2889
Query 2483 TGACCGTGAAAA-CTCTCAGAGCTTTGAGAGCTGCAGAGTCGCTAAAGAGACGGATAAAT 2541
|| |||||| | | ||||| | || | |||| || ||| ||| || || |||
Sbjct 2890 CAACTGTGAAATGCA-TGAGAGCACTCAG-G--GCAGGGTTGCTGGAGAAACAGAAAAAC 2945
Query 2542 GAAAGGTTGCATGCGTTTGCTCTGTGCGAAAACG-CATTGACA-CTGGGAATTGTGCAA- 2598
|||||||| | ||| ||||||||||| |||||| | | ||| ||| |||||| ||
Sbjct 2946 GAAAGGTTACCTGCTTTTGCTCTGTGTGAAAACAACGTA-ACATCTGA-AATTGTT-AAG 3002
Query 2599 TCCCATGAGTTGGAGATCAGAACTCTGGCAAATCTCTCATCCTTTGAGGTTGTGTTGAAG 2658
|| || ||||||||||||||||| || |||||||| |||||||| |||||||||| ||
Sbjct 3003 TCTCACGAGTTGGAGATCAGAACCCTTGCAAATCTATCATCCTTAGAGGTTGTGTCAAAA 3062
Query 2659 GGAGAAGACAAAGCAGC-CCAATCTGGATCGGCTGTTGTAGAGACAGTT--CGAGAACCT 2715
||| || || ||||| ||| ||||||| | |||| ||| | || |||||||||
Sbjct 3063 GGACAA--CAT-GCAGCACCAC-CTGGATCTTCAGTTG-AGA--CGGTGAACGAGAACCT 3115
Query 2716 CAAGGTGTATCTAAAATTGGATGGAGC 2742
||| || ||||| || |||| |||||
Sbjct 3116 CAAAGTATATCTTGAAGTGGACGGAGC 3142
> AT1G27160.1 | Symbols: | valyl-tRNA synthetase / valine--tRNA
ligase-related | chr1:9432418-9433190 FORWARD LENGTH=773
Length=773
Score = 804 bits (435), Expect = 0.0
Identities = 615/700 (88%), Gaps = 20/700 (3%)
Strand=Plus/Plus
Query 1980 TGGTTACCGCCAGTGGTGTAATAAACTGTGGAACGCCGTCAGATTTGCGATGATGAAGCT 2039
||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1 TGGCTACCGCCAGTGGTGTAACAAACTGTGGAATGCTGTCAGATTTGCGATGATGAAGCT 60
Query 2040 TGGTGATGGCTATACTCCTCCT-TCACAAGCTCTAAGCCCTAGAGCCATGCCCTTCAGCT 2098
||| ||||| |||||||||||| | ||| ||||| |||||| | ||||| |||||||||
Sbjct 61 TGGCGATGGGTATACTCCTCCTGT-GCAAACTCTACGCCCTAAAACCATGACCTTCAGCT 119
Query 2099 GCCAATGGATCCTCTCTGTACTAAATAAGGCAATATCTAAGACAGTGGATTCCTTGAATG 2158
|||||||||| || ||| | | | ||| ||||||| ||||||||||||||||||||||
Sbjct 120 GCCAATGGATTCTTTCT-T--T-ACTAA--CAATATCGAAGACAGTGGATTCCTTGAATG 173
Query 2159 CTTTTG-AGTTATCGGATGCAGCCAACACGGTGTATGCCTGGTGGCAATACCAATTCTGT 2217
| |||| | ||||||||||| ||||||| |||||||| |||||||||||||| ||||||
Sbjct 174 CGTTTGCA-TTATCGGATGCTGCCAACA--GTGTATGCTTGGTGGCAATACCAGTTCTGT 230
Query 2218 GATGTATTTATCGAAGCAGTTAAGCCTTATTTTTCTGCTGAAAAC-CCAGGCAGGACCCA 2276
|||||||||||||| ||| ||||||||||||||||||||| | || | | | |||| ||
Sbjct 231 GATGTATTTATCGAGGCAATTAAGCCTTATTTTTCTGCTG-ACACTCAAAGAAGGATTCA 289
Query 2277 TGCACAAGACGCTCTCTGGGTGTGTCTCGAGACTGGCTTGCGATTGCTGCATCCGTTTAT 2336
||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 290 TGCACAAGATGCTCTCTGGGTGTGTCTCGAGACTGGTTTGAGATTGCTGCATCCATTTAT 349
Query 2337 GCCTTTTGTAACAGAAGAGCTGTGGCAGCGGTTGCCGTCACCGCAAGACTGTGAACGGAA 2396
||||| | | |||||||||||||||||||||||||| ||| ||||||||| |||||| ||
Sbjct 350 GCCTTATATTACAGAAGAGCTGTGGCAGCGGTTGCCTTCATCGCAAGACTCTGAACGAAA 409
Query 2397 GGCGTCTATCATGATATGTGACTACCCTTCTCCCGA-AGAGAAGTGGACAAATGAGAAGG 2455
||||||||||||||||||||||||||| ||| || | ||||| ||||||||| |||||||
Sbjct 410 GGCGTCTATCATGATATGTGACTACCCATCTTCC-ATAGAGATGTGGACAAACGAGAAGG 468
Query 2456 TGGAGACCGAAATGGACGTGGTTCTGGTGACCGTGAAAACTCTCAGAGCTTTGAGAGCTG 2515
|||| || ||||||||| ||||||| | ||||||||||||||| || || |||||||||
Sbjct 469 TGGAAACTGAAATGGACATGGTTCTAGCGACCGTGAAAACTCTTAGGGCACTGAGAGCTG 528
Query 2516 CAGAGTCGCTAAAGAGACGGATAAATGAAAGGTTGCATGCGTTTGCTCTGTGC-GAAAAC 2574
|||||||||||||||||| || |||||||| ||| |||||||||||||||| | | |||
Sbjct 529 CAGAGTCGCTAAAGAGACAGAGAAATGAAAAGTTCCATGCGTTTGCTCTGT-CTGGAAAT 587
Query 2575 GCATTGACACTGGGAATTGTGCAATCC-CATGAGTTGGAGATCAGAACTCTGGCAAATCT 2633
||||| |||||||| |||||| || || |||||| |||||||||||||||| ||||||||
Sbjct 588 GCATTAACACTGGGGATTGTGAAA-CCACATGAGCTGGAGATCAGAACTCTTGCAAATCT 646
Query 2634 CTCATCCTTTGAGGTTGTGTTGAAGGGAGAAGACAAAGCA 2673
|||||||||||||||| |||||| ||||||||||||||||
Sbjct 647 CTCATCCTTTGAGGTTATGTTGAGGGGAGAAGACAAAGCA 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136654752732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5