BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342751
Length=438
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04080.1 | Symbols: | MATE efflux family protein | chr2:135... 625 1e-178
AT2G04066.1 | Symbols: | MATE efflux family protein | chr2:135... 580 3e-165
AT2G04040.1 | Symbols: ATDTX1, TX1 | MATE efflux family protein... 516 8e-146
AT2G04050.1 | Symbols: | MATE efflux family protein | chr2:133... 503 6e-142
AT2G14661.1 | Symbols: | Pseudogene of AT2G04040; ATDTX1; anti... 483 8e-136
> AT2G04080.1 | Symbols: | MATE efflux family protein | chr2:1357189-1359253
REVERSE LENGTH=1663
Length=1663
Score = 625 bits (338), Expect = 1e-178
Identities = 405/438 (92%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 2 TGGCAGGGCTTTGTCTCTGGATAGTAGAATCAGCTTTCTTTAGCACACTTCTCTTCACCT 61
|||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 1089 TGGCAGGGCTTTGTCTCTGGCTTGTAGAGTCAGCTTTCTTTAGCACACTTCTCTTCACCT 1148
Query 62 GTCGGAATATCGTAGGCTACACATTCAGCAACAGCAAAGAAGTTGTTGACTATGTGGCTG 121
| || || ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1149 GCCGAAACATCATAGGCTACACATTCAGCAACAGCAAAGAAGTTGTTGACTATGTTGCTG 1208
Query 122 ACATATCATA-TTTGCTCTGTCTCTCATTCATCCTCGACGGATTTACCGCAGTTCTAAAT 180
||||||| | ||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1209 ACATATC-TCCTTTGCTCTGTCTCTCCTTCATCCTCGACGGATTAACGGCAGTTCTAAAT 1267
Query 181 GGAGTTGCTAGAGGATGTGGGTGGCAACACATTGGAGCTTTGATCAACGTGGTGGCTTAT 240
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 GGAGTGGCTAGGGGATGTGGGTGGCAACACATTGGAGCTTTGATCAACGTGGTGGCTTAT 1327
Query 241 TATCTCGTAGGTGCCCCGGTTGGAGTTTACTTAGCTTTCAGTCTTGAGTGGAACGGAAAA 300
||||| ||||| || || ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1328 TATCTTGTAGGAGCTCCTGTTGGAGTTTACTTAGCTTTCAGTCGTGAGTGGAATGGAAAA 1387
Query 301 GGACTGTGGTGCGGTGTTATGGTTGGATCCGCTGTACAAGCCACTATACTGGCTATCGTC 360
||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 1388 GGACTCTGGTGCGGTGTTATGGTTGGATCCGCGGTGCAAGCCACTTTACTGGCTATCGTC 1447
Query 361 ACAGCGTCCATAAATTGGAAGGAACAGGCTGAGAAAGCTAGGAAGAGAATAGTCTCAACT 420
||||| ||||| || ||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 1448 ACAGCCTCCATGAACTGGAAGGAACAGGCTGAGAAAGCAAGGAAGAGAATAATCTCTACT 1507
Query 421 GAAAATGGATTGGCTTAA 438
||||||||||||| ||||
Sbjct 1508 GAAAATGGATTGGTTTAA 1525
> AT2G04066.1 | Symbols: | MATE efflux family protein | chr2:1352887-1353517
REVERSE LENGTH=516
Length=516
Score = 580 bits (314), Expect = 3e-165
Identities = 377/408 (92%), Gaps = 2/408 (0%)
Strand=Plus/Plus
Query 32 CAGCTTTCTTTAGCACACTTCTCTTCACCTGTCGGAATATCGTAGGCTACACATTCAGCA 91
||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||
Sbjct 110 CAGCTTTCTTTAGCACACTTCTCTTCACCTGCCGAAACATCATAGGCTACACATTCAGCA 169
Query 92 ACAGCAAAGAAGTTGTTGACTATGTGGCTGACATATCATA-TTTGCTCTGTCTCTCATTC 150
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||
Sbjct 170 ACAGCAAAGAAGTTGTTGACTATGTTGCTGACATATC-TCCTTTGCTCTGTCTCTCCTTC 228
Query 151 ATCCTCGACGGATTTACCGCAGTTCTAAATGGAGTTGCTAGAGGATGTGGGTGGCAACAC 210
|||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 229 ATCCTCGACGGATTAACGGCAGTTCTAAATGGAGTGGCTAGGGGATGTGGGTGGCAACAC 288
Query 211 ATTGGAGCTTTGATCAACGTGGTGGCTTATTATCTCGTAGGTGCCCCGGTTGGAGTTTAC 270
||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct 289 ATTGGAGCTTTGATCAACGTGGTGGCTTATTATCTTGTAGGAGCTCCTGTTGGAGTTTAC 348
Query 271 TTAGCTTTCAGTCTTGAGTGGAACGGAAAAGGACTGTGGTGCGGTGTTATGGTTGGATCC 330
||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 349 TTAGCTTTCAGTCGTGAGTGGAATGGAAAAGGACTCTGGTGCGGTGTTATGGTTGGATCC 408
Query 331 GCTGTACAAGCCACTATACTGGCTATCGTCACAGCGTCCATAAATTGGAAGGAACAGGCT 390
|| || ||||||||| ||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 409 GCGGTGCAAGCCACTTTACTGGCTATCGTCACAGCCTCCATGAACTGGAAGGAACAGGCT 468
Query 391 GAGAAAGCTAGGAAGAGAATAGTCTCAACTGAAAATGGATTGGCTTAA 438
||||| || |||||||||||| |||||||| |||||||||||| ||||
Sbjct 469 GAGAAGGCAAGGAAGAGAATAATCTCAACTAAAAATGGATTGGTTTAA 516
> AT2G04040.1 | Symbols: ATDTX1, TX1 | MATE efflux family protein
| chr2:1334512-1336489 REVERSE LENGTH=1542
Length=1542
Score = 516 bits (279), Expect = 8e-146
Identities = 388/440 (88%), Gaps = 10/440 (2%)
Strand=Plus/Plus
Query 4 GCAGGGCTTTGTCTCTGGATAGTAGAATCAGCTTTCTTTAGCACACTTCTCTTCACCTGT 63
|||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 1006 GCAGGGCTTTGTCTCTGGATAGTAGAGTCAGCTTTCTTTAGCATACTTCTATTCACCTG- 1064
Query 64 C-GGAATATCGTAGGCTACACATTCAGCAACAGCAAAGAAGTTGTT-GACTATGTGGCTG 121
| |||| ||| |||| ||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 1065 CAGGAACATCATAGGATACGCATTCAGCAACAGCAAAGAAGTT-TTGGACTATGTAGCTG 1123
Query 122 ACATATCAT-ATTTGCTCTGTCTCTCATTCATCCTCGACGGATTTACCGCAGTTCTAAAT 180
|| || | | ||||||||| ||||| || ||||||||||| || || ||||||||||||
Sbjct 1124 ACCTAAC-TCCTTTGCTCTGCCTCTCCTTTATCCTCGACGGCTTCACAGCAGTTCTAAAT 1182
Query 181 GGAGTTGCTAGAGGATGTGGGTGGCAACACATTGGAGCTTTGATC-A-ACGTGGTGGCTT 238
||||||||||| ||| |||| ||||||||||||||||||| || | | || | || |||
Sbjct 1183 GGAGTTGCTAGGGGAAGTGGTTGGCAACACATTGGAGCTTGGAACAATAC-T-GTTTCTT 1240
Query 239 ATTATCTCGTAGGTGCCCCGGTTGGAGTTTACTTAGCTTTCAGTCTTGAGTGGAACGGAA 298
||||||| ||||| || || |||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1241 ATTATCTTGTAGGAGCTCCTGTTGGAATTTACTTAGCTTTCAGTCGTGAGTTGAACGGAA 1300
Query 299 AAGGACTGTGGTGCGGTGTTATGGTTGGATCCGCTGTACAAGCCACTATACTGGCTATCG 358
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |
Sbjct 1301 AAGGACTGTGGTGCGGTGTTGTGGTTGGATCTACTGTGCAAGCCACTATACTGGCTATTG 1360
Query 359 TCACAGCGTCCATAAATTGGAAGGAACAGGCTGAGAAAGCTAGGAAGAGAATAGTCTCAA 418
||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 1361 TCACAGCTTCCATAAATTGGAAGGAACAGGCTGAGAAGGCAAGGAAGAGAATTGTCTCAA 1420
Query 419 CTGAAAATGGATTGGCTTAA 438
||||||| |||||||||||
Sbjct 1421 CTGAAAACAGATTGGCTTAA 1440
> AT2G04050.1 | Symbols: | MATE efflux family protein | chr2:1337386-1339270
REVERSE LENGTH=1431
Length=1431
Score = 503 bits (272), Expect = 6e-142
Identities = 385/440 (88%), Gaps = 6/440 (1%)
Strand=Plus/Plus
Query 2 TGGCAGGGCTTTGTCTCTGGATAGTAGAATCAGCTTTCTTTAGCACACTTCTCTTCACCT 61
|||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
Sbjct 995 TGGCAGGGCTTTGTCTCTGGCTTGTAGAGTCAGCTTTCTTTAGCACACTTCTCTTCACAT 1054
Query 62 GTCGGAATATCGTAGGCTACACATTCAGCAACAGCAAAGAAGTTGTTGACTATGTGGCTG 121
| || || || |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1055 GCCGAAACATTATAGGCTACGCATTCAGCAACAGCAAAGAAGTTGTGGACTATGTGGCTA 1114
Query 122 ACATATCATA-TTTGCTCTGTCTCTCATTCATCCTCGACGGATTT-ACCGCAGTTCTAAA 179
|| || | | ||||||||| ||||| || ||||||||||| ||| || |||||||| ||
Sbjct 1115 ACCTAAC-TCCTTTGCTCTGCCTCTCCTTTATCCTCGACGG-TTTCACAGCAGTTCTGAA 1172
Query 180 TGGAGTTGCTAGAGGATGTGGGTGGCAACACATTGGAGCTTTGATCAACGTGGTGGCTTA 239
||| ||||| || ||| |||| |||||||||||||||||||||| ||||||||| |||||
Sbjct 1173 TGGGGTTGCAAGGGGAAGTGGTTGGCAACACATTGGAGCTTTGAACAACGTGGTAGCTTA 1232
Query 240 TTATCTCGTAGGTGCCCCGGTTGGAGTTTACTTAGCTTTCAGTCTTGAGTGGAACGGAAA 299
|||||| ||||| || || |||||||| ||||||||||||| || ||||| |||||||||
Sbjct 1233 TTATCTTGTAGGAGCTCCTGTTGGAGTATACTTAGCTTTCAATCGTGAGTTGAACGGAAA 1292
Query 300 AGGACTGTGGTGCGGTGTTATGGTTGGATCCGCTGTACAAGCCACTA-TACTGGCTATCG 358
|||||| ||||| |||||| |||| ||||||||||| ||||||| || || ||||| | |
Sbjct 1293 AGGACTTTGGTGTGGTGTTGTGGTCGGATCCGCTGTGCAAGCCA-TAATATTGGCTTTTG 1351
Query 359 TCACAGCGTCCATAAATTGGAAGGAACAGGCTGAGAAAGCTAGGAAGAGAATAGTCTCAA 418
||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1352 TCACAGCTTCCATAAATTGGAAGGAACAGGCTGAGAAGGCTAGGAAGAGAATGGTCTCTA 1411
Query 419 CTGAAAATGGATTGGCTTAA 438
||||||| |||||||||||
Sbjct 1412 GTGAAAATAGATTGGCTTAA 1431
> AT2G14661.1 | Symbols: | Pseudogene of AT2G04040; ATDTX1; antiporter/
multidrug efflux pump/ multidrug transporter/ transporter
| chr2:6273315-6274037 REVERSE LENGTH=561
Length=561
Score = 483 bits (261), Expect = 8e-136
Identities = 381/438 (87%), Gaps = 12/438 (3%)
Strand=Plus/Plus
Query 4 GCAGGGCTTTGTCTCTGGATAGTAGAATCAGCTTTCTTTAGCACACTTCTCTTCACCTGT 63
||| |||||||||||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 130 GCAAGGCTTTGTCTCTGGATAGTAGAGTCAGCTTTCTTTAGCATACTTCTATTCACCTG- 188
Query 64 C-GGAATATCGTAGGCTACACATTCAGCAACAGCAAAGAAGTTGTT-GACTATGTGGCTG 121
| |||| ||| |||| ||| ||||||||||||||||||||||| || |||||||| || |
Sbjct 189 CAGGAACATCATAGGATACGCATTCAGCAACAGCAAAGAAGTT-TTGGACTATGTCGCCG 247
Query 122 ACATATCAT-ATTTGCTCTGTCTCTCATTCATCCTCGACGGATTTACCGCAGTTCTAAAT 180
|| || | | ||||||||| ||||| || ||||||||||| ||||| |||||||| |||
Sbjct 248 ACCTAAC-TCCTTTGCTCTGCCTCTCCTTTATCCTCGACGGCTTTACAGCAGTTCTTAAT 306
Query 181 -GGAGTTGCTAGAGGATGTGGGTGGCAACACATTGGAGCTTTGATC-A-ACGTGGTGGCT 237
||| ||||||| ||| |||| ||||||||||||||||||| || | | || | || ||
Sbjct 307 GGGA-TTGCTAGGGGAAGTGGTTGGCAACACATTGGAGCTTGGAACAATAC-T-GTTTCT 363
Query 238 TATTATCTCGTAGGTGCCCCGGTTGGAGTTTACTTAGCTTTCAGTCTTGAGTGGAACGGA 297
|||||||||||| | || || ||||| |||||||||||||||||| ||||| |||||||
Sbjct 364 TATTATCTCGTATGAGCTCCTCTTGGAATTTACTTAGCTTTCAGTCGTGAGTTGAACGGA 423
Query 298 AAAGGACTGTGGTGCGGTGTTATGGTTGGATCCGCTGTACAAGCCACTATACTGGCTATC 357
|||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||
Sbjct 424 AAAGGATTGTGGTGCGGTGTTGTGGTTGGATCTACTGTGCAAGCCACTATACTGGCTATT 483
Query 358 GTCACAGCGTCCATAAATTGGAAGGAACAGGCTGAGAAAGCTAGGAAGAGAATAGTCTCA 417
|||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 484 GTCACAGCTTCCATAAATTGGAAGGAACAGGCTGAGAAGGCAAGGAAGAGAATTGTCTCA 543
Query 418 ACTGAAAATGGATTGGCT 435
||||||||| ||||||||
Sbjct 544 ACTGAAAATAGATTGGCT 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20810848086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5