BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342754

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04115.1 | Symbols:  | Plant self-incompatibility protein S1...   189    2e-47


> AT2G04115.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr2:1385449-1386071 FORWARD LENGTH=623
Length=623

 Score =  189 bits (102),  Expect = 2e-47
 Identities = 121/130 (93%), Gaps = 2/130 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGTTTTATTTTAATCTTCAAGTATACAGAGCAGCTGGTACTGAACGATGTGATCAG  60
            ||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||
Sbjct  307  ATGGAGTTTCATTTTAATCTTCAAGTATACAGAGCAGCTGCAACTGAACGATGTAATCAG  366

Query  61   TATCGCTCATGGACTGCTAAACCTGATGGAATTTGGTTTACAAGAGATCGTTCA-AAACC  119
            |||||||||||||||||||| ||||||||||||||||||| ||||||||||  | |||||
Sbjct  367  TATCGCTCATGGACTGCTAAGCCTGATGGAATTTGGTTTAGAAGAGATCGTA-ATAAACC  425

Query  120  GTCGGGACAT  129
            ||||||||||
Sbjct  426  GTCGGGACAT  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5