BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342773
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04305.1 | Symbols: | Magnesium transporter CorA-like famil... 1232 0.0
> AT2G04305.1 | Symbols: | Magnesium transporter CorA-like family
protein | chr2:1501408-1503785 REVERSE LENGTH=1821
Length=1821
Score = 1232 bits (667), Expect = 0.0
Identities = 752/794 (95%), Gaps = 2/794 (0%)
Strand=Plus/Plus
Query 570 TGTTATTGAGGAGCATGTTCTTGAATTCTTGCTGACTATGAACCATTCTGAGGAAGCTGA 629
||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 758 TGTGATTGAGGAGCATGTTCTTGAGTTCTTGTTGAAAATGAACCATTCTGAGGAAGCTGA 817
Query 630 TAACCCTGTGCCAACTTCTGTTTCGAATCTTGTTGTGCATATTATTGATACACATGTTGA 689
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 818 TAACCCTGTGCCAACTTCTGTTTCGAATCTTGTTGTGCATATTATTGACACACATGTTGA 877
Query 690 TC-AGCTTCAAGATGTTGTTACTAAACTTGAGATCGAATTGGATGCTGTGGAACTCGAAA 748
|| | |||||||||||||||||| ||||||||||||||||||||| ||||| || ||||
Sbjct 878 TCGA-CTTCAAGATGTTGTTACTGAACTTGAGATCGAATTGGATGGGGTGGAGCTAGAAA 936
Query 749 TGGATAGAGGTGGATTTGCTATGAAGAAACAGATGTTGGATGATAGAAGGTTCCCTAAAC 808
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 937 TGGATAGAGGTGGATTTGCTATGAAGAAAAAGATGTTGGATGATAGAAGGTTCCCGAAAT 996
Query 809 TGCATCTCAACTTGCAGCGTCTTTTGCAGGTGATTGCACATGGAGAACAAGTATTTCCAA 868
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 997 TGCATCTCAACTTGCAGCGTCTATTGCAGGTGATTGCGCATGGAGAACAAGTATTTCCAA 1056
Query 869 GAGTGAAGGAAAAATGTTCAACGAAGCCTTGGTTTCTGGCAGAAGACATCAACTCGTTGG 928
||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1057 GAGTGAAAGAAAAATGTTCCACGAAGCCTTGGTTTCTGGCAGAAGACATCCACTCGTTGG 1116
Query 929 AAGAGTTGATTGGGCGGTTAAGACGGTTAAAAGAAAATGTAGGCTTCATTGCGAATCGTG 988
|||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1117 AAGAGTTGATTGGGAGGTTAAGACGTTTAAAAGAGAATGTAGGCTTCATTGCGAACCGTG 1176
Query 989 TGACTGCAATTCAAGCTGGTTTGGATAGCTGGCAAGCCGAGCAAATCAACCGAAAGCTCT 1048
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1177 TGACTGCAATCCAAGCTGGGTTGGATAGCTGGCAAGCCGAACAAATCAACCGAAAGCTCT 1236
Query 1049 ATTACCTCTCCTTTCTTTCCATCATATTCCTTCCTCTATCGATTATTACCGGAGTTTTTG 1108
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1237 ATTACCTCTCCTTTCTTTCCATCATATTCCTTCCTCTATCAATTATAACCGGAGTTTTTG 1296
Query 1109 GAATGAATGTTGGAGGAGTACCTTGGACGGGACAAGACAAACCGGAGCTAGGAGACGGAT 1168
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1297 GGATGAATGTTGGAGGAGTACCTTGGACGGGACAAGACAAACCGGAGCTAAGAGACGGAT 1356
Query 1169 TCAGAAATGTGATGTACATCTGTTTGATAATGCTGGTTCTAGTGTTGTGCTGCTTTGGTT 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1357 TCAGAAATGTGATGTACATCTGTTTGATAATGCTGGTTCTAGTGTTGTGCTGCTTCGGCT 1416
Query 1229 TTCCAGCGTTATATAGTCGGATAGCTTCTTGGTGGAGAATGAGAGATATGAAAAGAAGTT 1288
||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 1417 TTCCAGCGTTATATAGTCGCATAGCGTCTTGGTGGGGAACGAGAGATATGAAAAGAAGTT 1476
Query 1289 GGTCTCTTAACAGAAGATCGTTCCAGAAGAGACCAAACATAGTCCAAGAAAGAAGAGGCT 1348
|||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 1477 GGTCTCTTAACAGAAGATCGTTTAAGAAGATACCAAACATAGTCCAAGAAAGAAAAGGCT 1536
Query 1349 ACCTTAGGCTCTAA 1362
||||||||||||||
Sbjct 1537 ACCTTAGGCTCTAA 1550
Score = 758 bits (410), Expect = 0.0
Identities = 490/527 (93%), Gaps = 12/527 (2%)
Strand=Plus/Plus
Query 1 ATGCAGCAGCAAGATCGAATTGGTGATGAAGTAGATGAGACGGATCTTGAGTCTTTAACA 60
||||||||||||||||||||| | | || | | || | || |||||||||||||| |||
Sbjct 249 ATGCAGCAGCAAGATCGAATT-G-G-TG-A-T-GA--A-ACAGATCTTGAGTCTTTCACA 299
Query 61 AGTAGTGTTCCTCGTAGAGACGCTTCACATAGGTTTAGTTCTCATCAATTCTCAGGAATG 120
|||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 300 AGTAGTGTTCCTAGTAGAGACGCTTCTCATAGGTTTAGTTCTCATCAGTTCTCAGGAATG 359
Query 121 GTGAGACAAAGAGCTTATATATTTGATGGTGATGGTAAATACTATAACAAAGAATGGGAT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTAGACAAAGAGCTTATATATTTGATGGTGATGGTAAATACTATAACAAAGAATGGGAT 419
Query 181 CTTGCTGAAGGAACAGGGAAAGAGTTTTGTTGGTATCATGTTGAATTACCTAAAGGAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTGCTGAAGGAACAGGGAAAGAGTTTTGTTGGTATCATGTTGAATTACCTAAAGGAAAT 479
Query 241 CAGAAGCTTTCTCAATCTGCTCAGCATTTGATTGATGCTTTATGTCCACCATTGAAG-TT 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 480 CAGAAGCTTTCTCAATCTGCTCAGCATTTGATTGATGCTTTATGCCCACCATTGAAGCTT 539
Query 300 GCAAGACATTCTTTCTCTTGTTAGTAATGGGCCCTTTTGTGGGCATGTTGACGGAGCGCT 359
|| ||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 540 -CAGGACATTCTTGCTCTTGCTAGTAATGGACCCTTTTGTGGGCATGTTGATGGAGCGCT 598
Query 360 TGTGTTTCGAGTTAATTCACCTGGTCCTGCTTCGAGTAGTTTTACGTTCAAGATTGCTGC 419
||| ||| |||||||||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct 599 TGTCTTTAGAGTTAATTCTCCTGGTCCTGCTTCTAGTAGTAATACGTTTAAGATTGCTGC 658
Query 420 TAGGATTACTGAGAATTCTGTGATCACTGTGTCTTTAGGACGGGTTCCTAGGTTAGGATT 479
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 659 GAGGATTACTGAGAACTCTGTGATCACTGTTTCTTTAGGACGAGTTCCTAGGTTAGGTTT 718
Query 480 CTCGCCTATGGGTCAATCACTTCTCTCGGAAGTTCCTAGTGTGGATT 526
|||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 719 CTCGCCTATGGGTCAATCGCTTCTCTCGGAAGTTCCTAGTGTG-ATT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5