BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342776
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04360.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1277 0.0
> AT2G04360.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr2:1519393-1521056 REVERSE LENGTH=1241
Length=1241
Score = 1277 bits (691), Expect = 0.0
Identities = 896/990 (91%), Gaps = 33/990 (3%)
Strand=Plus/Plus
Query 1 ATGTTGGAAAGCATTAA-CCTCATCTCCTGCAACTTCTCTCGTCTTCCTCTTCTTCTTAA 59
||||||| ||||| ||| |||||||||||||||||||||||| ||||| | |||||||||
Sbjct 27 ATGTTGGGAAGCA-TAAGCCTCATCTCCTGCAACTTCTCTCGCCTTCCACGTCTTCTTAA 85
Query 60 ACCCTCGAGACCACAC-CAATCCTTAAGACAATCCCCAAAACACCTCCTTCTTCTACAAT 118
|||||| | | || | ||| || ||| ||||||| ||| | ||| |||||||| ||||
Sbjct 86 ACCCTCCACTCGAC-CTCAAACCCTAACACAATCCTCAAGCCTCCTTCTTCTTCTTCAAT 144
Query 119 CACGAGCTTCTTCTTCTTCAACTTTTCTA-AAAT-CCGATAAAATTCTCCACCACAATCA 176
|||||||||||||||| | || || || | || | || ||| | | ||| |
Sbjct 145 CACGAGCTTCTTCTTC-ACCAC----ATAGAATTGCC-CT----TT-TCC-CGA-AAT-A 190
Query 177 CCGTTTCTCGAGGAAAGGCACATTCTTCCATATCTGCAAAAGCTCTTTAAACAACCCAGA 236
|| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 191 -CG-----AGAAGAAAGTCACATTCTTCCATATCTGCAAAAGCTCTTCAAACAACCCAGA 244
Query 237 AGAACCAGAGAAAACTCAAATTCAAGAAGAAGGAAGAGATTGGTCAAGCTCAATTTTGCT 296
|||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 245 AGAACCAGAGAAGACTCAAATTCAAGATGAAGGAAGAGACTGGTCTAGCTCAATTTTGCT 304
Query 297 TTTTGCG-TTATGGGGTGCGCTTTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACAC 355
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 305 TTTTGCGCTT-TGGGGTGCGCTCTTGTACTATTGCTTCAATCTCGCTCCTGATCAAACAC 363
Query 356 CGACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGATGGTTTTA 415
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CCACACAAGACTTGTACTTTTTGAAAAAGCTTTTGAATTTGAAAGGTGATGATGGTTTTA 423
Query 416 GAATGAATCAGATCCTTGTTGGGTTATGGTACATTATGGGTTTGTGGCCTTTGGTTTATG 475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 424 GAATGAATCAGATCCTTGTTGGGTTATGGTACATCATGGGTTTGTGGCCTTTGGTTTATG 483
Query 476 GCATGCTCTTGCTTCCCACTGCT-CGAAGTAAAACTCCGGCTTGGCCTTTTGTCGTGCTT 534
|||||||||||||||||||| | | ||||||||| |||||||||||||| || ||||||
Sbjct 484 CCATGCTCTTGCTTCCCACTGGTAC-AAGTAAAACACCGGCTTGGCCTTTCGTTGTGCTT 542
Query 535 TCGTTTTTCGGTGGTGTATATGCTTTGTTACCTTATTTTGCCCTGTGGAGTCCTCCTTCT 594
|| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 543 TCCTTTTTCGGTGGTGTTTATGCTTTGTTACCTTATTTTGCACTGTGGAATCCTCCTTCT 602
Query 595 CCTCCTGTTTCAGAGACTGAACTGAGACAATGGCCTTTGAATGTTCTGGAATCAAAAGTC 654
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 603 CCTCCTGTTTCAGAGACTGAGCTGAGACAATGGCCTTTGAATGTTCTGGAATCAAAAGTA 662
Query 655 ACTGCTGGGGTAACTCTTGTTGCAGGACTGGGTATAATTCTTTATTCAGTAGTTGGTAAT 714
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 663 ACTGCTGGGGTCACTCTAGTTGCAGGACTGGGTATAATTCTTTATTCAGTTGTCGGTAAT 722
Query 715 GCCGGTGACTGGACAGAGTTCTATCAGTACTTTCGAGAGAGCAAATTCATTCATGTAACG 774
|||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 723 GCCGGTGATTGGACGGAGTTTTATCAGTACTTTCGAGAGAGCAAATTTATTCATGTTACA 782
Query 775 AGTCTTGATTTCTGTTTACTGTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACC 834
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 783 AGTCTTGATTTCTGTTTACTCTCTGCATTTGCTCCGTTTTGGGTTTACAACGACATGACC 842
Query 835 ACCCGAAAATGGTTTGACAAAGGCAGTTGGCTTTTACCGGTATCGGTGATTCCATTCTTG 894
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 843 ACCCGAAAATGGTTTGATAAAGGCAGTTGGCTGTTACCGGTATCGGTGATTCCATTCTTG 902
Query 895 GGACCTTCTTTGTATCTTCTCCTACGACCAGCAGTGTCAGAGACGATAATAGCTCCCAAA 954
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 903 GGACCTTCTTTGTATCTACTCCTACGACCAGCAGTGTCAGAGACGATA---GCTCCCAAA 959
Query 955 GATTCTGCATCATCTGACCCAAATAAATAG 984
||| |||||||||||||||||||| |||||
Sbjct 960 GATACTGCATCATCTGACCCAAATCAATAG 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5