BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342794
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61440.1 | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine... 1188 0.0
AT2G43750.1 | Symbols: OASB, ACS1, CPACS1, ATCS-B | O-acetylser... 115 8e-25
> AT3G61440.1 | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine
synthase C1 | chr3:22735747-22737980 FORWARD LENGTH=1433
Length=1433
Score = 1188 bits (643), Expect = 0.0
Identities = 893/1011 (88%), Gaps = 28/1011 (3%)
Strand=Plus/Plus
Query 30 CCCCAAAG-CTTTCCCATCCACTAAAGCCAAAGGCGATGCCTCAATGCTCA-TCGGAAGA 87
|||||||| | ||||| || || || |||||| | || ||||| |||| | | |||| |
Sbjct 258 CCCCAAAGAC-TTCCCCTCTACCAACGCCAAACGTGACGCCTCTCTGCTTATTGGGAA-A 315
Query 88 ACTCCACTTGTGTTTCTCAACAAAGTGACTGAAGGATGTGAGGCTTATATTGCAGCCAAG 147
|| || |||||||| ||||||||||| |||||||| ||||| || ||| ||||||||||
Sbjct 316 ACGCCTCTTGTGTTCCTCAACAAAGTCACTGAAGGTTGTGAAGCGTATGTTGCAGCCAAA 375
Query 148 CAAGAACATTTCCAGCCTACTTGTAGCATCAAAGACAGACCAGCTTTAGCCATGATTGTG 207
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 376 CAAGAACATTTCCAGCCAACTTGTAGCATTAAAGACAGACCAGCTATAGCCATGATTGCA 435
Query 208 GATGCAGAGAAG-AAAAACTTAATCACCCCTGGAAAAACTACATTGATAGAACCCACTTC 266
|||||||||||| |||||| |||||| |||||||||||| ||| ||||||| || |||||
Sbjct 436 GATGCAGAGAAGAAAAAAC-TAATCATCCCTGGAAAAACAACACTGATAGAGCCTACTTC 494
Query 267 AGGAAACATGGGAATTAGTTTGGCTTTCATGGCGGCAATGAAAGGATACAAGATTATTAT 326
||||||||||||||| ||||||||||||||||| || |||||||| |||| |||||| ||
Sbjct 495 AGGAAACATGGGAATCAGTTTGGCTTTCATGGCTGCTATGAAAGGGTACAGGATTATAAT 554
Query 327 AACAATGCCTTCTTACACAAGCTTGGAGAAGAGAGTGACAATGAGGTCCTTTGGTGCAGA 386
|| |||||||| ||||| |||||||||| ||||||||| ||||| ||||||||||| ||
Sbjct 555 GACGATGCCTTCGTACACTAGCTTGGAGAGGAGAGTGACGATGAGATCCTTTGGTGCTGA 614
Query 387 GCTTGTCCTCACTGATCCAACCAAAGGAATGGGTGGAGCTGTTAAGAAAGCTTATGAACT 446
|||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 615 GCTTGTTCTCACTGATCCAGCCAAAGGAATGGGTGGAACTGTTAAGAAAGCTTATGACCT 674
Query 447 CCTTGAGACTACTCCTGATGCTTTTATGTTG-CAACAGTTTAATAATCCAGCAAACACTC 505
|||||| | ||||||||||||||| ||| || ||||||||| |||||| ||||||||||
Sbjct 675 CCTTGATAGTACTCCTGATGCTTTCATG-TGTCAACAGTTTGCTAATCCTGCAAACACTC 733
Query 506 AGGTTCATTATGATACGACTGGTCCTGAGATTTGGGAAGATACACATGGGAATGTCGATA 565
|| |||||| |||||| |||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct 734 AGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACTTGGAAATGTTGATA 793
Query 566 TATTCGTGATGGGAATTGGCACTGGAGGTACAGTCACTGGTGTTGGGAGATATCTTAAAT 625
|||| |||||||||||||||| |||||| |||||| |||||||||| |||| |||||||
Sbjct 794 TATTTGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGGCCGATACCTTAAAT 853
Query 626 CTAAAAACCCCAATGTTAAGATATATGGAGTGGAGCCTGCTGAAAGCAACATACTCAACG 685
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CTAAAAACCCCAATGTCAAGATATATGGAGTGGAGCCTGCTGAAAGCAACATACTCAACG 913
Query 686 GTGGCAAACCAGTTGTGAACTTTGAGTTAGGTCCACATGAGATCACGGGAAATGGGGTTG 745
|||||||||||| || || | | | | || ||| | | || | ||| ||||
Sbjct 914 GTGGCAAACCAG--GTCCACAT-GC-T-A--TC-ACA-G-G--CA----A--TGGTGTTG 955
Query 746 GATTTAAACCGGATATCTTGGATATGGATGTTATGGACAAAGTTCTTGAGGTTAGTAGTG 805
|||| ||||| || ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 956 GATTCAAACCAGAAATCTTGGATATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTG 1015
Query 806 AGGATGCTGTAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGACTCATGGTTGGGATAT 865
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1016 AGGATGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTCATGGTTGGGATAT 1075
Query 866 CGTCGGGAGCTAACACCGTGGCAGCCATTAGACTGGCGAAAATGCCAGAGAATAAAGGCA 925
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1076 CGTCGGGAGCTAACACCGTGGCAGCAATTAGACTGGCGAAAATGCCAGAGAATAAAGGCA 1135
Query 926 AACTCATTGTGACGATTCATCCAAGCTTTGGAGAGAGATATTTGTCGTCTGTTCTGTTTG 985
||||||||||||| |||||| | ||||| ||||| |||||| ||||||||||||||||||
Sbjct 1136 AACTCATTGTGACAATTCATGCGAGCTTCGGAGAAAGATATCTGTCGTCTGTTCTGTTTG 1195
Query 986 ATGAGCTGAGGAAAGAAGCAGCAGAA-ATGAAGCCAGTTTCAGTGGACTGA 1035
||||||||||||||||||||| || | |||||||||||||||||||| |||
Sbjct 1196 ATGAGCTGAGGAAAGAAGCAG-AGGAGATGAAGCCAGTTTCAGTGGATTGA 1245
> AT2G43750.1 | Symbols: OASB, ACS1, CPACS1, ATCS-B | O-acetylserine
(thiol) lyase B | chr2:18129435-18132552 REVERSE LENGTH=1578
Length=1578
Score = 115 bits (62), Expect = 8e-25
Identities = 200/265 (75%), Gaps = 16/265 (6%)
Strand=Plus/Plus
Query 368 TGAGGTCCTTTGGTGCAGAGCTTGTCCTCACTGATCCAACCAAAGGAATGGGTGGAGCTG 427
||||| | ||||| || |||||||| | ||||| || | ||||| ||| ||||||
Sbjct 766 TGAGGGCATTTGGAGCTGAGCTTGTGTTAACTGAACCTGCAAAAGGTATGACTGGAGCAA 825
Query 428 TTAAGAAAGCTTATGAACTCCTTG-AGACTACTCCTGATGCTTTTATGTTGCAACAGTTT 486
|| |||| ||| | ||| | |||| | | ||||| || | | ||| | |||||||||
Sbjct 826 TTCAGAAGGCTGAAGAAAT-CTTGAAAAAAACTCCCAATTCCTACATGCTCCAACAGTTT 884
Query 487 AATAATCCAG-CAAACACTC-AGGTTCATTATGATACGACTGGTCCTGAGATTTGGGAAG 544
| || || | ||| | | | || |||||||||| |||||||||||||||||||||||||
Sbjct 885 GACAACCCTGCCAATC-C-CAAGATTCATTATGAGACGACTGGTCCTGAGATTTGGGAAG 942
Query 545 ATACACATG-GG-AATGTCGATATATTCGT-GATGGGAATTGGCACTGGAGGTAC-AGTC 600
||||| | | || || |||||||||| || | |||| |||| ||||| || || | ||
Sbjct 943 ATACA-A-GAGGCAAAATCGATATATTGGTTGCGGGGA-TTGGAACTGGTGGAACTA-TC 998
Query 601 ACTGGTGTTGGGAGATATC-TTAAA 624
||||||||||| ||| || |||||
Sbjct 999 ACTGGTGTTGGTCGAT-TCATTAAA 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5