BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342808
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04830.1 | Symbols: | Protein of unknown function (DUF295) ... 564 4e-160
AT2G04810.1 | Symbols: | Protein of unknown function (DUF295) ... 516 1e-145
AT2G04840.1 | Symbols: | Protein of unknown function (DUF295) ... 398 4e-110
> AT2G04830.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1695355-1695856 FORWARD LENGTH=502
Length=502
Score = 564 bits (305), Expect = 4e-160
Identities = 353/376 (94%), Gaps = 3/376 (1%)
Strand=Plus/Plus
Query 282 AGAGGTACTTATAGTCTTGAGCTTaaaagaaaaagtgaaaaataaagaaaaaCTTTTGTT 341
||| ||||||||||||||||||||||| |||| |||||||||| |||| |||||||||||
Sbjct 4 AGAAGTACTTATAGTCTTGAGCTTAAAGGAAATAGTGAAAAATGAAGAGAAACTTTTGTT 63
Query 342 TTACATCTTTAAGATGAATCTTGAGAATTGCAAGTGGGAAAGAATTTATTCTATTGGAGA 401
|||||||||||||||||||||||||| || ||||||||||||| |||| |||||||||||
Sbjct 64 TTACATCTTTAAGATGAATCTTGAGAGTTACAAGTGGGAAAGAGTTTACTCTATTGGAGA 123
Query 402 TGAGATATTGATTTATGGTCGTGGGGTTACAATACCTCTTGCTCTTAAAGATCTTGGTCA 461
|||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 124 TGAGATGTTGATTTTTGGTCGTGGGGTTACAGTACCTCTCGCTCTTAAAGATCTTGGTCA 183
Query 462 CGGAATCAAGAGTGATTCAATCTATTTCGT-G--GACGAAGATGTTTGGCCAGATCATAA 518
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 184 CGGAATCAAGAGTGATTCAATCTATTTCGTCGACGACGAAGATGTTTGGCCAGATCATAA 243
Query 519 AGATTGGCCAGATCATAAAGATCATGTTTCAAATTGCGGTGTCTTCGATATTGCCACAAG 578
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 244 AGATTGGCCAGATTATAAAGATCATGTATCGAATTGCGGTGTCTTCGATATTGCCACAAG 303
Query 579 TAAGATCAAATGGCCTAAGAAGATCTATTTTTCCTTTAATAAAAATCAGTGGTTTGTTCG 638
||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 304 TAAGATCGAATGGCCTAAGAAGATCTATTTTTCCGTTAATAAAACTCAGTGGTTTGTTTG 363
Query 639 GGGAGTTGCTTATTAG 654
||||||||||||||||
Sbjct 364 GGGAGTTGCTTATTAG 379
> AT2G04810.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1688773-1689966 FORWARD LENGTH=1194
Length=1194
Score = 516 bits (279), Expect = 1e-145
Identities = 486/579 (84%), Gaps = 41/579 (7%)
Strand=Plus/Plus
Query 86 GTTTGGATGTT-TTGGATATGGCTTGTGAGAAGAGTAAACTTTATCTCTTCACAAGT-GA 143
|||||| | || || ||||||||||||||||| | ||| |||||| | || |||| | ||
Sbjct 647 GTTTGG-TTTTGTTTGATATGGCTTGTGAGAACAATAAGCTTTATTTGTTGACAA-TGGA 704
Query 144 TTATCACATCAAGAGTTTT-TATTTCTATGGAGGTTTCCCT-ATA-GAGGAAGAAAACCC 200
| |||||||||||| |||| |||||||||||| ||| | | | || ||| |||| ||
Sbjct 705 TCATCACATCAAGA-TTTTCAATTTCTATGGAGATTT-TTTAACAGGA-GAACAAAA-CC 760
Query 201 GTATTCGAATCATCCGTTTAACTTTGTTGGA-GAGCCTTGGGAATCCGTTTGGGGGAGGA 259
| | | ||||||||||||| ||| || || || | ||||| ||||||| |||||
Sbjct 761 ----T-G--T-ATCCGTTTAACTTCGTT-GAGGATCCGTCGGAATACGTTTGGAAGAGGA 811
Query 260 AAATAGCGATTCGGAGATCAGAAGAGGTACTTATAGTCTTGAGCTT-aaaagaaaaagtg 318
| |||| |||||||||||||| ||||||||| |||||||||||||| |||| ||||||||
Sbjct 812 AGATAGTGATTCGGAGATCAGGAGAGGTACTGATAGTCTTGAGCTTGAAAA-AAAAAGTG 870
Query 319 aaaaataaagaaaaaCTTTTGTTTTACATCTTTAAGATGAATCTTGAGAATTGCAAGTGG 378
||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 871 CAAAATGAAGAGAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTCGCAAGTGG 930
Query 379 GAAAGAATTTATTCTATTGGAGATGAGATATTGATTTATGGTCGTGGGGTTACAATACCT 438
|||||| |||||| ||||||||||||||| ||||||| |||||||||||||||| | |
Sbjct 931 GAAAGAGTTTATTGTATTGGAGATGAGATGTTGATTTTTGGTCGTGGGGTTACAG--C-T 987
Query 439 CTTGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATCTATTTCGT-GGACGA 497
||||||||| ||||||||| | | || || |||||| |||||||||||||||| || |||
Sbjct 988 CTTGCTCTTGAAGATCTTGATGATGGGATAAAGAGTAATTCAATCTATTTCGTCGG-CGA 1046
Query 498 AGATGTTTGGCCAGATCATAAAGATTGGCCAGATCATAAAG-ATCATGTTTCAAATTGCG 556
||||||||||||||||||| |||| | ||| | | ||| ||||||||||||||
Sbjct 1047 AGATGTTTGGCCAGATCATCAAGA------A---CATGA-GCATCGTGTTTCAAATTGCG 1096
Query 557 GTGTCTTCGATATTGCCACAAGTAAGATCAAATGGCCTAAGAAGATCTATT-TTTCCTTT 615
|| |||||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||
Sbjct 1097 GTTTCTTCGATATTGCCACAAGTAAGATCGAATGGCCTAAGAAAATCTATTGTTTCATT- 1155
Query 616 AATAAAAATCAGTGGTTTGTTCGGGGAGTTGCTTATTAG 654
||| ||||||||||||||||| |||||||||||||||||
Sbjct 1156 AATCAAAATCAGTGGTTTGTTGGGGGAGTTGCTTATTAG 1194
> AT2G04840.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:1697009-1698240 FORWARD LENGTH=1170
Length=1170
Score = 398 bits (215), Expect = 4e-110
Identities = 474/592 (80%), Gaps = 46/592 (8%)
Strand=Plus/Plus
Query 86 GTTTGGATGT-TTTGGATATGGCTTGTGAGAAGAGTAAACTTTATCTCTTCACAAG-TGA 143
|||||| ||| ||| |||||||| |||||||| | ||| |||||||| | ||| || | |
Sbjct 602 GTTTGGTTGTGTTT-GATATGGCATGTGAGAACAATAAGCTTTATCTGTACAC-AGCTAA 659
Query 144 TTATCACATCAAGAGTTTTT-ATTTCTATGGAGGTT-TCCCTAT---AGAG-GAA--GAA 195
| |||| |||| || ||||| |||||| ||||| || | ||||| | || || |||
Sbjct 660 TCATCATATCAGGA-TTTTTGATTTCTCTGGAGCTTAT-CCTATGGAAAAGAAAACCGAA 717
Query 196 AACCCGTATTCG-AATCATCCGTTTAACTTTGTTGGA-GAGCCTTGGGAATCCGTTTGGG 253
|||||||||| | ||| ||| ||||||| ||| || || || ||||||| |||||||
Sbjct 718 AACCCGTATTGGAAAT-ATCTGTTTAACGCGGTT-GAGGAACCGTGGGAATACGTTTGGA 775
Query 254 GGAGGAAAATAGCGATTC-G-GA-GATCAGAAGAGGTACTT-AT-AGTCTTGAG-CTTaa 307
||||||||||||||||| | | ||||| ||||| || || | ||||||| |||
Sbjct 776 AGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGT-TTTGATCA-TCTTGAGCCTT-- 831
Query 308 aagaaaaagtg-aaaaataa--agaaaaaCTTTTGTTTTACATCTTTAAGATGAATCTTG 364
| || ||||| | || ||| | ||||||||||||||||||||||||||||||||
Sbjct 832 -A-AACAAGTGTTTTACGAAGCAGAGAGACTTTTGTTTTACATCTTTAAGATGAATCTTG 889
Query 365 AGAATTGCAAGTGGGAAAGAATTTATTCTATTGGAGATGAGATATTGATTTATGGTCGTG 424
||| || ||||||||||||| |||||||| ||||||||||||| ||| ||| ||||| |
Sbjct 890 AGAGTTTCAAGTGGGAAAGAGTTTATTCTCTTGGAGATGAGATGTTGGTTTTTGGTCAAG 949
Query 425 GGGTTACAATACCT-CTTGCTCTTAAAGATCTTGGTCACGGAATCAAGAGTGATTCAATC 483
| |||||||||||| || |||||||||||||||||| | |||||||||||||||||||||
Sbjct 950 GTGTTACAATACCTACT-GCTCTTAAAGATCTTGGTGATGGAATCAAGAGTGATTCAATC 1008
Query 484 TATTTCGTGGACGAAGATGTTTGGCCAGATCATAAAGATTGGCCA-GATCATAAAGATCA 542
|||||||| || |||| || |||||||||||| ||||| | | |||| | ||
Sbjct 1009 TATTTCGTCGATAAAGACGTCTGGCCAGATCATCAAGAT---C-ATGATC-----G-TCG 1058
Query 543 TGTTTCAAATTGCGGTGTCTTCGATATTGCCACAAGTAAGATCAAATGGCCTAAGAAGAT 602
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 1059 TGTTTCGAATTGCGGTGTCTTCAATATTGCCACAAGTAAGATCAAATGGCCTACGAAAAA 1118
Query 603 CTATTTTTCCTTTAATAAAAATCAGTGGTTTGTTCGGGGAGTTGCTTATTAG 654
||| |||| | ||| ||| |||||||||||| | |||||||||||||||
Sbjct 1119 ATATCGTTCCGTAAATGAAACTCAGTGGTTTGTGCTCGGAGTTGCTTATTAG 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5