BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342855

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05440.2 | Symbols: ATGRP9, GRP9 | GLYCINE RICH PROTEIN 9 | ...   383    8e-106
  AT2G05510.1 | Symbols:  | Glycine-rich protein family | chr2:20...   279    1e-74 


> AT2G05440.2 | Symbols: ATGRP9, GRP9 | GLYCINE RICH PROTEIN 9 
| chr2:1993082-1994166 FORWARD LENGTH=727
Length=727

 Score =  383 bits (207),  Expect = 8e-106
 Identities = 330/383 (86%), Gaps = 33/383 (9%)
 Strand=Plus/Plus

Query  1    ATGGCTTCCAAGGCTTTGATTCTGTTAGGGCTCTTCGCAGTTCTTCTCGTCGTCTCCGAA  60
            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct  53   ATGGCTTCCAAGGCTTTGATTCTGTTAGGTCTCTTCTCAGTTCTTCTCGTCGTCTCCGAA  112

Query  61   GTGTCTGCCGCAAGGCAGTCGGGCATGGTGAAGCCAGAGAGTGAGGAAACTGTGCAACCT  120
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  113  GTGTCTGCCGCAAGGCAATCGGGCATGGTGAAGCCAGAGAGTGAGGAAACTGTGCAACCT  172

Query  121  GAAGGACATGGTGGTGGCCACGGAGGACATGGTGGTCACGGAGG---AGG---CCACGGA  174
            |||||  |||| ||||||||||||||||||||||||||||||||   |||   |||||||
Sbjct  173  GAAGGTTATGGCGGTGGCCACGGAGGACATGGTGGTCACGGAGGGGGAGGAGGCCACGGA  232

Query  175  CATGGAGGACACCACGGAGGAGGGGGCCacggacttgacggatacggagg---tgga---  228
            |||||||||||| |||||||||||||||||||||||||||||||||||||   ||||   
Sbjct  233  CATGGAGGACACAACGGAGGAGGGGGCCACGGACTTGACGGATACGGAGGAGGTGGAGGA  292

Query  229  cactacggaggagg---aggacactacggaggaggaggagg-c-c-acggac-ac-tacg  280
            ||||| ||||||||   |||||||||||||||||| ||||| | | |||||  |  |  |
Sbjct  293  CACTATGGAGGAGGTGGAGGACACTACGGAGGAGGTGGAGGACACTACGGAGGAGGT--G  350

Query  281  gaggagg--a-ggaggaggcc-acggacactacggaggaggaggaggccacggacactac  336
            |||||    | ||||||||   | ||||||||||||||||| || ||  | ||||||   
Sbjct  351  GAGGACACTACGGAGGAGGTGGA-GGACACTACGGAGGAGGTGGTGG--A-GGACAC---  403

Query  337  ggaggtggaaaacaccacggagg  359
            |||||||||  |||| |||||||
Sbjct  404  GGAGGTGGAGGACACTACGGAGG  426


> AT2G05510.1 | Symbols:  | Glycine-rich protein family | chr2:2015706-2016749 
FORWARD LENGTH=707
Length=707

 Score =  279 bits (151),  Expect = 1e-74
 Identities = 345/427 (81%), Gaps = 59/427 (14%)
 Strand=Plus/Plus

Query  1    ATGGCTTCCAAGGCTTTGATTCTGTTAGGG-CTCTTCGCAGTTCTTCTCGTCGTCTCCGA  59
            ||||| |||||||||||||||||||| ||| ||||||||| ||||||| || ||||||||
Sbjct  102  ATGGCATCCAAGGCTTTGATTCTGTT-GGGTCTCTTCGCAATTCTTCTGGTGGTCTCCGA  160

Query  60   AGTGTCTGCCGCAAGGCAGTCGGGCATGGTGAAGCCAGAGAGTGAGGAAACTGTGCAACC  119
            ||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  161  AGTTTCTGCCGCAAGACAGTCGGGCATGGTGAAGCCAGAGAGTGAGGCAACTGTGCAACC  220

Query  120  TGAAGG--A-CATGG------TGGTGGCCACGGAGGACATGGTGGTCAC---GGAGGAGG  167
            ||||||  | || ||      |||||| ||||||||    || || |||   ||||||||
Sbjct  221  TGAAGGTTATCACGGAGGACATGGTGGTCACGGAGGG---GGAGGCCACTACGGAGGAGG  277

Query  168  ---CCACGGACATGGAGGACACCACGGAGGAGGGGGCCacggacttgacggatacggagg  224
               |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  278  AGGCCACGGGCATGGAGGACACAACGGAGGAGGGGGCCACGGACTTGACGGATACGGAGG  337

Query  225  tggacactacggaggaggaggacactacggaggaggaggaggccacggacactacggagg  284
             ||||| |  ||||||      ||||||||||||||||||||  ||  ||  ||||||||
Sbjct  338  AGGACA-T--GGAGGA------CACTACGGAGGAGGAGGAGG--AC--AC--TACGGAGG  382

Query  285  aggaggaggaggccacggacactacggaggaggaggaggccacggacactacggaggtgg  344
            |||||||||   ||||||    |  || || |||     | ||      |||||||||||
Sbjct  383  AGGAGGAGG---CCACGG----T--GGTGGTGGA-----C-AC------TACGGAGGTGG  421

Query  345  aaaacaccacggaggaggaggccacggGCTTAACGACGAACCTGTTCAGACTCAGCCGGG  404
            |  |||||| ||||||||||||||||||||||||||  | |||||||||||  | |||||
Sbjct  422  AGGACACCATGGAGGAGGAGGCCACGGGCTTAACGA--A-CCTGTTCAGACGAAACCGGG  478

Query  405  TGTTTAA  411
            |||||||
Sbjct  479  TGTTTAA  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5