BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg342859

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05540.1 | Symbols:  | Glycine-rich protein family | chr2:20...   396    1e-109


> AT2G05540.1 | Symbols:  | Glycine-rich protein family | chr2:2033156-2034217 
FORWARD LENGTH=756
Length=756

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 270/297 (91%), Gaps = 3/297 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTTCAAAAGCTTTGCtttttttAAGTCTCATTGTTGTTCTTCTCATCGCGTCTGAG  60
            |||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||
Sbjct  110  ATGGCTTCAAAAGCATTGCTTTTTTTAAGTCTCATTGTTGTTCTTCTTATAGCTTCTGAG  169

Query  61   GTGGTAGCCAGAGACCTCGCTGAAAAATCCGCAGAGTATaaaaaaaaTGAGAGAGACGAA  120
            ||||||||||||||||||||||| ||||| |||||| | ||||| ||||| |||||||||
Sbjct  170  GTGGTAGCCAGAGACCTCGCTGAGAAATCGGCAGAGCAGAAAAACAATGAAAGAGACGAA  229

Query  121  GTAAAGCAAACTGAGCAGTTTggagggtacccgggaggagggtatggagggtacccggga  180
            ||||||||||| ||||||||||| ||||  || ||||||||||||||||||| |||||||
Sbjct  230  GTAAAGCAAACGGAGCAGTTTGGCGGGTTTCCAGGAGGAGGGTATGGAGGGTTCCCGGGA  289

Query  181  ggagggtatggaggaaaccctggtggagggtatggaAACCGCGGTGG---ATATGGAAAC  237
            ||||||||||||||||||||||||||||| ||||||||||| |||||   |||| |||||
Sbjct  290  GGAGGGTATGGAGGAAACCCTGGTGGAGGATATGGAAACCGTGGTGGTGGATATAGAAAC  349

Query  238  CGTGGTGGAGGATATGGAAACCGCGGTGGTGGATATGGAAACCGTGGTGGAGGTTAT  294
            |||| |||||||||||||||||||||||| |||||||||||||| || ||||| |||
Sbjct  350  CGTGATGGAGGATATGGAAACCGCGGTGGAGGATATGGAAACCGAGGAGGAGGATAT  406


 Score =  339 bits (183),  Expect = 2e-92
 Identities = 205/216 (95%), Gaps = 0/216 (0%)
 Strand=Plus/Plus

Query  232  GGAAACCGTGGTGGAGGATATGGAAACCGCGGTGGTGGATATGGAAACCGTGGTGGAGGT  291
            ||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||| 
Sbjct  302  GGAAACCCTGGTGGAGGATATGGAAACCGTGGTGGTGGATATAGAAACCGTGATGGAGGA  361

Query  292  TATGGAAACCGCGGTGGTGGATATGGAAACCGAGGAGGAGGATACTGTCGCTACGGCTGC  351
            ||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||
Sbjct  362  TATGGAAACCGCGGTGGAGGATATGGAAACCGAGGAGGAGGATATTGTCGCTATGGTTGC  421

Query  352  TGCTACAGAGGCTACTACGGTGGCTGCTCCAGGTGTTGTGCTTATGCTGGTCAGGCTGTT  411
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  422  TGCTACAGAGGCTACTACGGTGGCTGCTTCAGGTGTTGTGCTTATGCTGGTCAGGCTGTT  481

Query  412  CAAACTCAGCCACAGAGTACTGAGCCTGGTCACTAA  447
            |||||||||||||||||||||||||| |||||||||
Sbjct  482  CAAACTCAGCCACAGAGTACTGAGCCGGGTCACTAA  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21263257827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5