BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342884
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21740.1 | Symbols: | Protein of unknown function (DUF630 a... 846 0.0
> AT1G21740.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr1:7641580-7645078 FORWARD LENGTH=2862
Length=2862
Score = 846 bits (458), Expect = 0.0
Identities = 510/535 (95%), Gaps = 3/535 (1%)
Strand=Plus/Plus
Query 89 GAGCTGGTGGTGGTGAAAGTTCCGGTGCCGGAGTTGGGTTTTCTCCGGCCATGGGTGGAG 148
||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 911 GAGCTGGTGGTGGTGAAAGTTCCGGTGCCGGAGCTGGGTTTTTTCCAGCCATGGGTGGAG 970
Query 149 GTAAGTCAAATTCAAGCAGTCCTGATTCGAGGGAAGTGAGAGAGAGGGAAGGGATTCCTG 208
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GTAAGTCGAATTCAAGTAGTCCTGATTCGAGGGAAGTGAGAGAGAGGGAAGGGATTCCTG 1030
Query 209 AGTTGGAAGAAGAAACAGAGCAAGAAGTGAT-T--GGCCAAACGTTTAAACATATGAAGA 265
|||||||||||||||||||||||||||| || | || || |||||||||||||||||||
Sbjct 1031 AGTTGGAAGAAGAAACAGAGCAAGAAGTTATCTTTGGGCAGACGTTTAAACATATGAAGA 1090
Query 266 GGAAAGGCATTGAGAAGGTGAAAGAACAACACAGACAGGAGAATGAGATTCACGACAGAA 325
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1091 GAAAAGGCATTGAGAAGGTGAAAGAACAACACAGACAGGAGAATGAGATTCACGAGAGAA 1150
Query 326 AGATCAAGAAACGAGGAGATTCAGGTGAAGGAACATCAAGGGCAGTGCCTATGGTAGAAA 385
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1151 AGATCAAGAAACGAGGAGATTCAGGTGAAGGAACTTCAAGGGCAGTGCCTGTGGTAGAAA 1210
Query 386 GGGCTACGGAGAGCTCTTTTGGTTCAAAGACTGTGTCTTCGTTTTCGAGTAGTGAAGAAG 445
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1211 GGGCTACGGAGAGCTCTTTTGGTTCAAAGACTGTGTCGTCGTTTTCGAGCAGTGAAGAAG 1270
Query 446 AGTCTGAGTTTCATCATGTTAATGACGGAGAAGGAAAGAGTAGCAGTAATGATTTAAGTG 505
|||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 1271 AGTCGGAGTTTCATCATGTTAATGATGGAGAAGGGAAGAGTAGCAGTAATGATTTAGGTG 1330
Query 506 GGCATGAGACAGTTGCTACTAAGAGTGTTGGAGAAGTAGAAGAAGAATATGTGAGGAAGA 565
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GGCATGAGACGGTTGCTACTAAGAGTGTTGGAGAAGTAGAAGAAGAATATGTGAGGAAGA 1390
Query 566 AAGGAGTGAGCTTTGAGTTGGATGAAAATGCAACTACTTCTTTTGATGTTAAATC 620
||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1391 AAGGAGTTAGCTTTGAGTTGGATGAAAATGTAACTACTTCTTTTGATGTTGAATC 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5