BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342933
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleo... 880 0.0
AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA process... 787 0.0
> AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein
binding region-containing protein | chr1:22192773-22195400
FORWARD LENGTH=1819
Length=1819
Score = 880 bits (476), Expect = 0.0
Identities = 808/963 (84%), Gaps = 44/963 (5%)
Strand=Plus/Plus
Query 404 TTACTGCTTTAACCACAAAAGGGAAACCACTTCCAGATAG-TATCCTACGAAAGACGTTA 462
||||||||||||| || ||||||| |||| ||||| | | | | | |||| ||||
Sbjct 647 TTACTGCTTTAACTACGAAAGGGAGTGCACTGCCAGA-GGATGTTTTGCAAAAGGTGTTA 705
Query 463 GACGCTTGTGATCACGCTATT-GATCTTGATTCGGCAAGGAAAAAGGTTCTTGAGTTTGT 521
|| |||||||||| ||| || ||||||||||| |||||||| ||||| |||||||||||
Sbjct 706 GAGGCTTGTGATCGGGCT-TTAGATCTTGATTCCGCAAGGAAGAAGGTCCTTGAGTTTGT 764
Query 522 TGAAAGAAAGATGGGATCTATCGCACCAAATCTCTCTGCTATTGTCGGGAGTGCTGTTGC 581
|||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||
Sbjct 765 TGAAAGTAAGATGGGATCTATTGCACCTAATCTTTCTGCTATTGTTGGGAGTGCTGTTGC 824
Query 582 AGCCAAGCTTTTGGGAACTGCTGGAGGTTTATCGGCACTTGCGAACATGCCTGCTTGTAA 641
|||||| || |||| |||||||||||||| || |||||||| || |||||||| |||||
Sbjct 825 AGCCAAACTCATGGGGACTGCTGGAGGTTTGTCAGCACTTGCTAAAATGCCTGCGTGTAA 884
Query 642 TCTTCTAGTTCTTGGCCACAACAGGAAGAACCATGTC-GGATTCTCTACTGCAATGTCAC 700
| ||| ||||||||||||||| |||||||||| || | || || ||| |||||| ||| |
Sbjct 885 TGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTG-CTGGGTTTTCTTCTGCAACGTCTC 943
Query 701 AGTCTCGTGCGGGTTATTTGGAGCAGACAGAGATTTTCCAAAGCACGCCTCC-GGAACTT 759
|||| |||| ||||||| |||||||||||||||||| ||||||||||||||| || ||||
Sbjct 944 AGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTACCAAAGCACGCCTCCTGG-ACTT 1002
Query 760 CA-AATGCGCGCTAGCAGACTCTTGGCTTCAAAATCGACTTTGGCAGCAAGAGTTGACGC 818
|| | |||||| |||| ||| ||||| ||||||| |||||||||||||||||||| ||
Sbjct 1003 CAGGCT-CGCGCTGGCAGGCTCGTGGCTGCAAAATCAACTTTGGCAGCAAGAGTTGATGC 1061
Query 819 TACTAGAGGAGATCCATCT-GGAACAAACGGGAAAGCTTTGAGGGAGGAAATCCGCAAGA 877
||||||||| ||||| | | || | || || |||||||| |||||||| ||||| ||||
Sbjct 1062 TACTAGAGGGGATCCGT-TAGGGATAAGTGGAAAAGCTTTCAGGGAGGAGATCCGTAAGA 1120
Query 878 ATATTGACAAGTGGCAAGAACCTCCACCTGCAAGGCAACGTAAGCCACTTCATGTTCCTT 937
| ||||| || |||||||||||||| |||||||| || | ||||||||||| |||||||
Sbjct 1121 AGATTGAGAAATGGCAAGAACCTCCTCCTGCAAGACAGCCTAAGCCACTTCCTGTTCCTG 1180
Query 938 ATTCTGAGCCTAA-AAAGAGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAAGAAAGGTAT 996
||||||| || || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 ATTCTGAACCGAAGAAA-AGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAAGAAAGGTAT 1239
Query 997 CAAGTGACAGACATAAGAAAGCTGGCCAACAGGATGGCGTTTGGTACACCTGAAGAGAGC 1056
||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1240 CAAGTAACAGATATGAGGAAGCTGGCCAACAGAATGGCGTTTGGTACACCTGAAGAGAGC 1299
Query 1057 TCCCTAGGTGATGGATTAGGT-ATCGGATATGGAATGCTTGGTCAGGCTGGGAGCAATAG 1115
||||| ||||||||| |||| | || |||||||||||||| ||||| || ||||| ||
Sbjct 1300 TCCCTCGGTGATGGACTAGGAGAA-GGTTATGGAATGCTTGGCCAGGCAGGAAGCAACAG 1358
Query 1116 GCTGCG--T-----GT-TTC-GAGCAAGCTGAA-AGTTAATGCTAAGGTCGCCAAAAAGC 1165
|||||| | || ||| ||||||||| || | ||||||||||||||||||||||||
Sbjct 1359 GCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAGA-TTAATGCTAAGGTCGCCAAAAAGC 1417
Query 1166 -----GA----CAGT-TCACAGGTGGTTCTACTACCTCTGGTTTGACGACATCAAGTCTG 1215
|| |||| | | |||||| | ||||||||||||||||| | || || |||
Sbjct 1418 TTAAAGAAAGGCAGTATG-CGGGTGGTGCGACTACCTCTGGTTTGAC-A--TCGAGCCTG 1473
Query 1216 GCTTTTACTCTTGTGCAAGGAATAGAGTTGTGCAATCCTCAG--G-CATTAGGATTAGTC 1272
||||| |||| |||||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 1474 GCTTTCACTCCTGTGCAGGGAATAGAGTTGTGCAATCCTCAGCAGGCTTTAGGATTAGGA 1533
Query 1273 AGTTGGATTCAAAGCACTTACTTCTCAGAGTCGGGAACTTTCTCCAAACTCAAGAAGATT 1332
||| ||| |||||||||||||||||||||||| ||||| ||||| || || ||||||||
Sbjct 1534 AGTGGGACTCAAAGCACTTACTTCTCAGAGTCAGGAACCTTCTCGAAGCTGAAGAAGATC 1593
Query 1333 TAA 1335
|||
Sbjct 1594 TAA 1596
> AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA processing
ribonucleoprotein, similar to U4/U6 snRNP-associated 61
kDa protein (Homo sapiens) GI:18249847; contains Pfam profile
PF01798: Putative snoRNA binding domain; blastp match of
63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010
putative U4/U6 snRNP-associated 61 kDa protein
{Oryza sativa (japonica cultivar-group)} | chr3:22403237-22405048
REVERSE LENGTH=1812
Length=1812
Score = 787 bits (426), Expect = 0.0
Identities = 795/966 (82%), Gaps = 54/966 (6%)
Strand=Plus/Plus
Query 404 TTACTGCTTTAACCACAAAAGGGAAACCACTTCCAGATAGTAT-CCTA-CGAAAGACGTT 461
||||||||| ||| || ||||||| |||| |||| || || || | |||| |||
Sbjct 669 TTACTGCTTCAACTACGAAAGGGAGTGCACTGCCAG--AGGATGTTTAGCAAAAGGTGTT 726
Query 462 AGACGCTTGTGATCACGCTATT-GATCTTGATTCGGCAAGGAAA-AAGGTTCTTGAGTTT 519
||| |||||||||| | | || ||||||||||| |||| |||| ||||| |||||||||
Sbjct 727 AGAGGCTTGTGATCGGGAT-TTAGATCTTGATTCCGCAA-GAAAGAAGGTCCTTGAGTTT 784
Query 520 GTTGAAAGAAAGATGGGATCTATCGCACCAAATCTCTCTGCTATTGTCGGGAGTGCTGTT 579
|||||||| |||||||| ||||| || || ||||| || || ||||| ||||||||||||
Sbjct 785 GTTGAAAGTAAGATGGGTTCTATTGCTCCTAATCTTTCCGCCATTGTTGGGAGTGCTGTT 844
Query 580 GCAGCCAAGCTTTTGGGAACTGCTGGAGGTTTATCGGCACTTGCGAACATGCCTGCTTGT 639
|||||||| || |||| || ||||||||||| || |||||||| || |||||||| |||
Sbjct 845 GCAGCCAAACTCATGGGGACAGCTGGAGGTTTGTCAGCACTTGCTAAAATGCCTGCCTGT 904
Query 640 AATCTTCTAGTTCTTGGCCACAACAGGAAGAACCATGTCGGATTCTCTACTGCAATGTCA 699
||| ||| ||||||||||||||| |||||||||| ||| || || ||| |||||| |||
Sbjct 905 AATGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTGTTGGGTTTTCTTCTGCAACGTCT 964
Query 700 CAGTCTCGTGCGGGTTATTTGGAGCAGACAGAGATTTTCCAAAGCACGCCTCC-GGAACT 758
||||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 965 CAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTTCCAAAGCACGCCTCCTGGA-CT 1023
Query 759 TCAAA-TGCGCGCTAGCAGACTCTTGGCTTCAAAATCGACTTTGGCAGCAAGAGTTGACG 817
| | | |||||| |||| ||| ||||| ||||||| ||||||||||| |||||||| |
Sbjct 1024 TGAGGCT-CGCGCTGGCAGGCTCGTGGCTGCAAAATCAACTTTGGCAGCTAGAGTTGATG 1082
Query 818 CTACTAGAGGAG-ATCCATCT-GGAACAAACGGGAAAGCTTTGAGGGAGGAAATCCGCAA 875
||||||||| || |||| | | || | || || |||||||| |||||||| ||||| ||
Sbjct 1083 CTACTAGAG-AGGATCCGT-TAGGGATAAGTGGAAAAGCTTTCAGGGAGGAGATCCGTAA 1140
Query 876 GAATATTGACAAGTGGCAAGAACCTCCACCTGCAAGGCAACGTAAGCCACTTCATGTTCC 935
||| ||||||||||||||||||||||| ||||||||||| | ||||||||||| | ||||
Sbjct 1141 GAAGATTGACAAGTGGCAAGAACCTCCTCCTGCAAGGCAGCCTAAGCCACTTCCTATTCC 1200
Query 936 TTATTCTGAGCCTAA-AAAGAGAAGGGGTGGTCGCCGTCTAAGAAAAATGAAAGAAAGGT 994
| |||||||||| || ||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 1201 TCATTCTGAGCCGAAGAAA-AGAAGGGGTGGTCGCCGTCTAAGAAAACTGAAAGCAAGGT 1259
Query 995 ATCAAGTGACAGACATAAGAAAGCTGGCCAACAGGATGGCGTTTGGTACACCTGAAGAGA 1054
||||||| ||||| || || |||||||||||||||| ||| |||||||||||||||||||
Sbjct 1260 ATCAAGTAACAGATATGAGGAAGCTGGCCAACAGGACGGCCTTTGGTACACCTGAAGAGA 1319
Query 1055 GCTCCCTAGGTGATGGATTAGGT-ATCGGATATGGAATGCTTGGTCAGGCTGGGAGCAAT 1113
||||||| ||||||||| |||| | || |||||||||||||| ||||| || |||||
Sbjct 1320 GCTCCCTCGGTGATGGACTAGGAGAA-GGTTATGGAATGCTTGGACAGGCAGGAAGCAAG 1378
Query 1114 AGGCTGCG--T-----GT-TTC-GAGCAAGCTGAAAGTTAATGCTAAGGTCGCCAAAAAG 1164
|||||||| | || ||| ||||||||| ||| ||||||| |||||||||||||||
Sbjct 1379 AGGCTGCGAGTATCCAGTGTTCAGAGCAAGCTTAAAATTAATGCCAAGGTCGCCAAAAAG 1438
Query 1165 C-----GA----CAGT-TCACAGGTGGTTCTACTACCTCTGGTTTGACGACATCAAGTCT 1214
| || |||| | | |||||| | ||||||||||||||||| | ||||| ||
Sbjct 1439 CTTAAAGAAAGGCAGTATG-CGGGTGGTGCAACTACCTCTGGTTTGAC-A--TCAAG-CT 1493
Query 1215 -GGCTTTTACT-CTTGTGCAAGGAATAGAGTTGTGCAATCCTCAG---GCATTAGGATTA 1269
|||||| ||| || |||| |||||||||||||||||||||||| || |||||||||
Sbjct 1494 TGGCTTTCACTTCTA-TGCAGGGAATAGAGTTGTGCAATCCTCAGCAAGCTTTAGGATTA 1552
Query 1270 GTCAGTTGGATTCAAAGCACTTACTTCTCAGAGTCGGGAACTTTCTCCAAACTCAAGAAG 1329
| ||| || ||||||||||| || | |||||| ||||| ||||| || || ||||||
Sbjct 1553 GGAAGTGGGGCTCAAAGCACTT-CT-C--AGAGTCAGGAACCTTCTCGAAGCTGAAGAAG 1608
Query 1330 ATTTAA 1335
|| |||
Sbjct 1609 ATCTAA 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5