BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg342995
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13150.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 728 0.0
AT2G12940.1 | Symbols: UNE4 | Basic-leucine zipper (bZIP) trans... 665 0.0
AT2G12900.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 377 9e-104
AT2G13115.1 | Symbols: | pseudogene of bZIP family transcripti... 300 2e-80
AT2G13145.1 | Symbols: | pseudogene, hypothetical protein | ch... 106 5e-22
> AT2G13150.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:5437056-5438459 FORWARD
LENGTH=789
Length=789
Score = 728 bits (394), Expect = 0.0
Identities = 615/718 (86%), Gaps = 30/718 (4%)
Strand=Plus/Plus
Query 82 TCACATGACTACTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATTCCGTCGTAAT 141
|||| || || ||| ||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 55 TCACTTGCCTTCTCTTCCTTGCCCCCATTGAGTCCTTCTCCGTCGTCATCCCGTCGCAAT 114
Query 142 TCATTACCATCGATGAGCCTTTCTCCGTCTTCTCATGTGGAAAATAGAGACTCTTCCATT 201
||| |||||| ||||| || ||| | | | || |||||| | ||||||||||||||||
Sbjct 115 TCAATACCATTGATGAACCCGTCT--G-C-T-TC-TGTGGAGAGTAGAGACTCTTCCATT 168
Query 202 AGGGCTAATAAGAA-AAACCATTCATTGCCTCCTTTGGGTGTAAAGAGAAGAGCAGCC-A 259
|||| | |||||| ||| | || ||||||||||||| |||| |||||||||||| || |
Sbjct 169 AGGG-T--TAAGAAGAAATC-TTTATTGCCTCCTTTGTGTGTGAAGAGAAGAGCACCCAA 224
Query 260 A-A-GACATTGAACCTTT-AAGGAGACACAACAGAAGTGTTTCACTGGACAGTTGTTTCA 316
| | |||||||||||||| || ||||||| |||| ||| ||||| |||| |||||||| |
Sbjct 225 AGACGACATTGAACCTTTCAA-GAGACACTACAGGAGTCTTTCAGTGGATAGTTGTTTGA 283
Query 317 GTGACTTACCGAAGTTGCCTCCTTCTCCGGGTAACGTTTCCTCTTCCAGTTCGGTTGATG 376
||||||||| || |||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 284 GTGACTTACTAAAACTGCCTCCTTCTCCGAATAACGTTTCCTCTTCAAGATCGGTTGATG 343
Query 377 GAG-ACGAGAATGCTTCCGACCTCGAGTTTGGTAGCAGTGATTATACTGATGATGAGTTG 435
||| || | ||||||||||| || ||||||| || ||||| ||||||||||||||| |||
Sbjct 344 GAGAAC-AAAATGCTTCCGAGCTTGAGTTTGATACCAGTGTTTATACTGATGATGAATTG 402
Query 436 AATAAGATCGCAGAGAGTCCCAGACTTAAAGAGTTTGAATCTGATCCTAAGAAAGTCAGA 495
|||||||| ||| ||||| ||| |||||||||| ||| ||| ||||||||| ||||||||
Sbjct 403 AATAAGATAGCAAAGAGTACCAAACTTAAAGAGGTTGCATCGGATCCTAAGGAAGTCAGA 462
Query 496 AGAATCTTGAAAAATCGAGAGTCAGCGGCACGTTCAAAGCAGAGGAAGTTACAGTACATT 555
|||||||||||||||| |||||| ||||||||||||||||||| ||||||||| || ||
Sbjct 463 AGAATCTTGAAAAATCAAGAGTCCGCGGCACGTTCAAAGCAGAAGAAGTTACAATATATG 522
Query 556 ATTGACTTGGAA-TACAGTGTAAACTTTCTTGAGAA-AAGAAATACTTCAATATATGAAA 613
||| |||||||| | || |||||||||||||||| || |||| ||||||||| |||||
Sbjct 523 ATTAACTTGGAACT-CAAAATAAACTTTCTTGAGAACAA-AAATGCTTCAATATTTGAAA 580
Query 614 AGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACT- 672
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 581 AGATCAAGCTTTTGGAGAATGATAAAACAATGAGGATGAATGAGAAGAAGGAAATCA-TG 639
Query 673 ATTCGAATTGAATCGAT-GGAGCAACAAGC-GCAACTTCGTGATGCCTTGACTGAACAAT 730
|||||||||||||| || ||||||||| || | ||||||||||||||||||| ||||| |
Sbjct 640 ATTCGAATTGAATC-ATTGGAGCAACACGCCG-AACTTCGTGATGCCTTGACCGAACATT 697
Query 731 TGCAAGCGGAAATTGAAAGGCTACATGCGGT-TACAATTTCAAATGAAAAAGGGAATG 787
|||| | ||||||||||||||| | || || | |||||| || |||||||||||||
Sbjct 698 TGCACGTAGAAATTGAAAGGCTAAAAGCTGTATT-AATTTCGAACGAAAAAGGGAATG 754
> AT2G12940.1 | Symbols: UNE4 | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:5317475-5319090 FORWARD
LENGTH=924
Length=924
Score = 665 bits (360), Expect = 0.0
Identities = 621/742 (84%), Gaps = 38/742 (5%)
Strand=Plus/Plus
Query 82 TCACATGACTACTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATTCCGTCGTAAT 141
|||| || || |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 93 TCACTTGCCTTCTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATCCCGTCGCAAT 152
Query 142 TCATTACCATCGATG-AGCCTTTCTCCGTCTTCTCATGTGGAAAATAGAGACTCTTCCAT 200
|||||||||| |||| | || | | ||||| | |||| | |||||||||||||||
Sbjct 153 TCATTACCATTGATGAATCC---GT-CAACTTCT-A--TGGAGAGTAGAGACTCTTCCAT 205
Query 201 TAGGGCTAATAAGAAAAAC-CATTCATTGCCTCCTTTGGGTGTAAAGAGAAGAGCAGCCA 259
| || | |||||||||| | || |||||||||||||||||| |||| || |||| |||
Sbjct 206 GA-GG-T-TTAAGAAAAACTC-TTTATTGCCTCCTTTGGGTGTGAAGAAAATAGCACCCA 261
Query 260 AAGACATTGAACCTTTAAGGAGACACAACAGAAGTGTTTCACTGGACAGTTGTTTCAGTG 319
|||| |||| ||| ||| ||||||| |||| ||||||||| |||| |||||||| ||||
Sbjct 262 AAGATATTGGACCCCTAAAGAGACACTACAGGAGTGTTTCAATGGATAGTTGTTTGAGTG 321
Query 320 ACTTACCGAAGTTGCCTCCTTCTCCGGGTAACGTTTCC-TCTTCCAG-TTCGGTTGATGG 377
|||||| |||| | ||||||||||||||||| ||| ||||| || || |||||||||
Sbjct 322 ACTTACTGAAGCTAACTCCTTCTCCGGGTAAC-ACTCCATCTTCAAGATT-GGTTGATGG 379
Query 378 AGACGAGAATGCTTCCGA-CCTCGAGTTTGGTAG-CAGTGATTATACTGATGATGAGTTG 435
|||| ||||||||||| | || ||||||| | | || |||||||||||||||||| |||
Sbjct 380 AGACCAGAATGCTTCC-AGGCTAGAGTTTGAT-GCCAATGATTATACTGATGATGAATTG 437
Query 436 AATAAGATCGCAGAGAGTCCCAGACTTAAAGAGTTTGAATCT-GATCCTAAGAAAGTCAG 494
|||||||| ||| ||||| || |||||||||| ||| || | ||||||||| |||||||
Sbjct 438 AATAAGATAGCAAAGAGTAACAAACTTAAAGAGGTTGCAT-TGGATCCTAAGGAAGTCAG 496
Query 495 AAGAATCTTGAAAAATCGAGAGTCAGCGGCACGTTCAAAGCAGAGGAAGTTACAGTACAT 554
|||||||||||| ||||||||||| || |||| || |||||||| |||||||||||| ||
Sbjct 497 AAGAATCTTGAAGAATCGAGAGTCCGCAGCACATTTAAAGCAGAAGAAGTTACAGTATAT 556
Query 555 TATTGACTTGGAATACAGTGTAAACTTTCTTGAGAAAAG-AAATACTTCAATATATGAAA 613
||| |||||||| |||| |||||||| ||||| || | |||| ||||||||| |||||
Sbjct 557 GATTAACTTGGAACACAGAATAAACTTTGTTGAG-AACGAAAATGCTTCAATATTTGAAA 615
Query 614 AGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACT- 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 616 AGATCAAGCTTTTGGAGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCA-TG 674
Query 673 ATTCGAATTGAATCGATGGAGCA-ACAAGCGCAACTTCGTGATGCCTTGACTGAACAATT 731
||||||||||||||||||||| | ||| || |||||||| |||| |||||||||||| ||
Sbjct 675 ATTCGAATTGAATCGATGGAG-ATACAGGCACAACTTCGGGATGTCTTGACTGAACATTT 733
Query 732 GCAAGCG-GAAATTGAAAGGCTACATGCGG--TTACAATTTCAAATGAAAAAGGGAATGT 788
||| | | |||| |||||||||| | || | ||| | |||| || ||||| |||||||
Sbjct 734 GCACG-GAGAAAGTGAAAGGCTAAAAGCTGCATTA-A-TTTCGAACGAAAATGGGAATG- 789
Query 789 GGAA-GCCCAACGGCTAAAGGA 809
| || | |||| ||||| |||
Sbjct 790 GAAAAGTCCAAAAGCTAA-GGA 810
> AT2G12900.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr2:5293897-5295480 FORWARD
LENGTH=795
Length=795
Score = 377 bits (204), Expect = 9e-104
Identities = 304/352 (86%), Gaps = 8/352 (2%)
Strand=Plus/Plus
Query 445 GCAGAGAGTCCCAGACTTAAAGAGTTTGAATCTGATCCTAAGAAAGTCAGAAGAATCTTG 504
||| ||||| ||| |||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 313 GCAAAGAGTACCAAACTTCAAGAGATTGTATCTGATCCTAAGAAAGTCAGAAGAATCTTG 372
Query 505 AAAAATCGAGAGTCAGCGGCA-CGTTCAAAGCAGAGGAAGTTACAGTACATTATTGACTT 563
||||||||||||| ||| ||| | ||||||||||||||||||| ||||||| ||||||||
Sbjct 373 AAAAATCGAGAGTTAGCCGCATC-TTCAAAGCAGAGGAAGTTAAAGTACATGATTGACTT 431
Query 564 GGAATACAGTGTAAACTTTCTTGAGAA-AAGAAATACTTCAATATATGAAAAGATCAAGC 622
|||| | || |||| ||||||||||| || |||| ||| ||||| |||||||||||| |
Sbjct 432 GGAACATAGAATAAAATTTCTTGAGAACAA-AAATGCTTTAATATTTGAAAAGATCAAAC 490
Query 623 TTTTGGAGAATGATAAAACAATGAT-GATGAATGAGAAGAAGGAAATCACTATTCGAATT 681
|||||||||| ||||||||||| || |||||||||||||||||||||||| |||| ||||
Sbjct 491 TTTTGGAGAAGGATAAAACAAT-ATTGATGAATGAGAAGAAGGAAATCACGATTCAAATT 549
Query 682 GAATCGAT-GGAGCAACAAGCGCAACTTCGTGATGCCTTGACTGAACAATTGCAAGCGGA 740
||||| || ||||||||| || |||||||||||||| ||||||||| ||||||| | ||
Sbjct 550 GAATC-ATTGGAGCAACAGGCCCAACTTCGTGATGCTTTGACTGAAAAATTGCACGTAGA 608
Query 741 AATTGAAAGGCTACATGCGGTTACAATTTCAAATGAAAAAGGGAATGTGGAA 792
||||||||||||| | | | || ||||| || |||||||||| ||| |||
Sbjct 609 AATTGAAAGGCTAAAAGTAATAACTATTTCGAACGAAAAAGGGAGTGTAGAA 660
Score = 182 bits (98), Expect = 7e-45
Identities = 148/172 (86%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 82 TCACATGACTACTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATTCCGTCGTAAT 141
|||| || || |||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct 58 TCACTTGCCTCCTCCTCCTTGCCCCCATTGAGCCCTTCTTCGTCAACATTCCGTCGCAAT 117
Query 142 TCATTACCATCGATGAGCCTTTCTCCGTCTTCTCATGTGGAAAATAGAGACTCTTCCATT 201
|||||||||||||||||| |||||||||| ||| |||||| | ||||||||||||||||
Sbjct 118 TCATTACCATCGATGAGCTTTTCTCCGTCAGCTCCTGTGGAGAGTAGAGACTCTTCCATT 177
Query 202 AGGGCTAATAAGAAAAACCATTCATTGCCTCCTTTGGGTGTAAAGAGAAGAG 253
| || |||||| ||| || ||||||||| ||||||| || | ||||||||
Sbjct 178 AAGGTTAATAA-AAAT-CC-TTCATTGCCCCCTTTGGTTG-ATGGAGAAGAG 225
Score = 113 bits (61), Expect = 3e-24
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 369 GGTTGATGGAGACGAGAATGCTTCC-GACCTCGAGTTTGGTAGCAGTGATTATACTGATG 427
|||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 210 GGTTGATGGAGAAGAGGATGCTTCCTG-GCTCGAGTTTGGTAGCAGTGATTATACTGATG 268
Query 428 ATGAGTTGAATAAGATCGCAGAGAGT 453
|||| ||||||||||| ||| |||||
Sbjct 269 ATGAATTGAATAAGATTGCAAAGAGT 294
> AT2G13115.1 | Symbols: | pseudogene of bZIP family transcription
factor | chr2:5401088-5403027 FORWARD LENGTH=1940
Length=1940
Score = 300 bits (162), Expect = 2e-80
Identities = 246/285 (86%), Gaps = 11/285 (4%)
Strand=Plus/Plus
Query 93 CTCCTCCTTGCCCCCATTGAGCCCTTCTCCGTCGTCATTCCGTCGTAATTCATTACCATC 152
||| ||||||||||| ||||||||||||||||||| || |||||| |||||||||||||
Sbjct 69 CTCTTCCTTGCCCCCGTTGAGCCCTTCTCCGTCGTTATCCCGTCGCAATTCATTACCATT 128
Query 153 GATGAGCCTTTCTCCGTCTTCTCATGTGGAAAATAGAGACTCTTCCATTAGGGCTAATAA 212
||||| ||||||||| || ||| ||| || | |||||| |||||||||| || | |||
Sbjct 129 GATGAACCTTTCTCCCTCAGCTCCTGTAGAGAGTAGAGAATCTTCCATTAAGG-T--TAA 185
Query 213 GAAAAACCATT-CATTGCCTCCTTTGGGTGT-AAAGAGAAGAGCAGCCAAAGACATTGAA 270
|||||||| || ||||||||||||||||||| ||| ||||||| |||||||||||||| |
Sbjct 186 GAAAAACC-TTACATTGCCTCCTTTGGGTGTGAAA-AGAAGAGTAGCCAAAGACATTGCA 243
Query 271 CCTTTAAGGAGACACAACA-GAAGTGTTTCACTGGACAGTTGTTT-CAGTGACTTACCGA 328
| ||||| ||||| ||| | ||||||||| |||| |||||||| || |||||||||||
Sbjct 244 CATTTAAATAGACATTACATG-AGTGTTTCATTGGATAGTTGTTTACA-TGACTTACCGA 301
Query 329 AGTTGCCTCCTTCTCCGGGTAACGTTTCCTCTTCCAGTTCGGTTG 373
|| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 302 AGCTGCCTCCTTCTCCGGGTAACGTTTCCTCTTCAAGTTCAGTTG 346
Score = 167 bits (90), Expect = 2e-40
Identities = 122/137 (89%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 496 AGAATCTTGAAAAATCGAGAGTCAGCGGCACGTTCAAAGCAGAGGAAGTTACAGTACATT 555
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 906 AGAATCTTGAAAAATCGAGAGTCGGCGGCATGTTCAAAGCAGAGGAAGTTACAGTACATG 965
Query 556 ATTGACTTGGAATACAGTGTAAACTTTCT-TGAGAAAAGAAA-TACTTCAATATATGAAA 613
||||| |||||| | || |||||||||| | |||| |||| | ||||||||| |||||
Sbjct 966 ATTGATTTGGAACAGAGAATAAACTTTCTCT-AGAAC-GAAAATGCTTCAATATTTGAAA 1023
Query 614 AGATCAAGCTTTTGGAG 630
|||||||||||||||||
Sbjct 1024 AGATCAAGCTTTTGGAG 1040
Score = 124 bits (67), Expect = 1e-27
Identities = 85/94 (90%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 404 TTGGTAGCAGTGATTATACTGATGATGAGTTGAATAAGATCGCAGAGAGTCCCAGACTTA 463
|||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||| ||||
Sbjct 344 TTGGTAGCAGTGATTATACTGATGATGAATTGAATAAGATTGCAAAGAGTACCAAACTTC 403
Query 464 AAGAGTTTGAATCTGATCCTAAGAAAGTCAGAAG 497
||||| | | ||||||||||||||||||||||||
Sbjct 404 AAGAGATCGCATCTGATCCTAAGAAAGTCAGAAG 437
> AT2G13145.1 | Symbols: | pseudogene, hypothetical protein |
chr2:5428731-5430290 FORWARD LENGTH=1560
Length=1560
Score = 106 bits (57), Expect = 5e-22
Identities = 79/89 (89%), Gaps = 4/89 (4%)
Strand=Plus/Plus
Query 629 AGAATGATAAAACAATGATGATGAATGAGAAGAAGGAAATCACT-ATTCGAATTGAATCG 687
||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 777 AGAATGATAAAACAATGATGATGAATGAGAAGAAGAAAATCA-TGATTCGAATTGAATC- 834
Query 688 AT-GGAGCAACAAGCGCAACTTCGTGATG 715
|| ||||||| || |||||||| ||||
Sbjct 835 ATTGGAGCAATTGGCCCAACTTCGGGATG 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5