BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343018
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 152 5e-36
AT1G33010.1 | Symbols: | F-box and associated interaction doma... 119 5e-26
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 93.5 3e-18
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 152 bits (82), Expect = 5e-36
Identities = 296/392 (76%), Gaps = 44/392 (11%)
Strand=Plus/Plus
Query 332 TTATAGTTTGCTTCGATGTTAGGTCTGAGAAATTCAAG--TTTAT-T-GAAG--CAGAAT 385
|||||| |||||| |||||||||||||||||||||||| ||||| | ||| |||| |
Sbjct 455 TTATAGGTTGCTTTGATGTTAGGTCTGAGAAATTCAAGTTTTTATATCTAAGCCCAGATT 514
Query 386 GCATATCC---CT--TTTTGACAAATTGATAAACTATAAGGGTAAATTAGGTGGGATTGA 440
|| | ||| || | | || ||||||||||||||||||||||||||||||| || | |
Sbjct 515 GC-TTTCCAAACTGGTCTAGA-AAATTGATAAACTATAAGGGTAAATTAGGTGTGACT-A 571
Query 441 GTTGATTTGT-GATGT-TCATGGTGC-TATCG--TTGAGATTG-GTATGTGGATTCTAGA 494
| || | ||| | |||||||| | || || || ||| |||||||| |||||||
Sbjct 572 -TA-ATG-GAAGAT-TATCATGGTGGATTTCCCCTTAAG-TTGCGTATGTGGGTTCTAGA 626
Query 495 GGATAT-GAAGATACAA-ATATGGTCAAAATATGTCTACACTTTGCCGCC-GA-A-TAAT 549
|||| | || || | | | |||| | | ||||| |||||||||| ||| || | |||
Sbjct 627 GGATGTCGA-GAAAGAGGA-ATGGACGAGATATGCCTACACTTTGAGGCCTGAGAATAA- 683
Query 550 A-TCGTTGATCACTC-CTGTTTCTCCGTTGCTGGAGTTACTGCTACAGGTGAAATTGTTT 607
| ||| || || | || | | | |||| ||| | |||||| |||||||||||||||
Sbjct 684 AGTCGAGGA-CAATGACTATGTATATGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTT 742
Query 608 TGACCAAAGACTATACATCTACATCTAAACCTTTTTATGTTTTCTACTTCAATA-TCGAA 666
|||| ||| | | | || ||| |||||| ||||||||||||||||| | | | |||
Sbjct 743 TGACGAAA--C-AGA-ATG--CATATAAACCGTTTTATGTTTTCTACTTTAGTCCT-GAA 795
Query 667 AGGAACACTCTCCGAAAAGTTGAAATCCAAGG 698
||||||||||||| || ||||||||||||||
Sbjct 796 AGGAACACTCTCCTAAGCGTTGAAATCCAAGG 827
> AT1G33010.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11959287-11960591 FORWARD LENGTH=1086
Length=1086
Score = 119 bits (64), Expect = 5e-26
Identities = 227/301 (75%), Gaps = 30/301 (10%)
Strand=Plus/Plus
Query 404 AATTGATAAACTATAAGGGTAAATTAGGTGGGATTGAGTTG-ATTTGTGATGTTCATGGT 462
||||||||||||||||||||||||||||||||||| ||||| | | | ||| | |||
Sbjct 539 AATTGATAAACTATAAGGGTAAATTAGGTGGGATT-AGTTGGAATAATCATG---A-GGT 593
Query 463 -GCTATCGTTGAGATTGG-TATGTGGATTCTAGAGGATAT-GAAGATACAA-ATATGGTC 518
||| ||||||| ||| ||||||| ||||||| ||| | || || |||| | ||||||
Sbjct 594 TGCTCCCGTTGAG-TTGTCTATGTGGGTTCTAGAAGATGTCGA-GAAACAAGA-ATGGTC 650
Query 519 -AAAATATGTCTACACTTTGCCGCCGAATAATA-TCGTTGATCACTCCTGTTTCTCCGTT 576
|||| ||||||||| |||||| |||| || || | || ||| ||| | | | |
Sbjct 651 CAAAA-ATGTCTACATTTTGCCTAAGAATG-TAGTCCCTAATAACTG--GTTGCAC-GCT 705
Query 577 GCTGGAGTTACTGCT-ACAGGTGAAATTGTTTTGACCAAAGACTATACATCTACATCTAA 635
|||||||| |||| | | |||||| |||||||| | | | || || | | | | ||
Sbjct 706 GCTGGAGTGACTGTTGA-AGGTGATATTGTTTTCTCGGAGG-CTGTAG-TAT-C--C-AA 758
Query 636 ACCTTTTTATGTTTTCTACTTCAATATCGAAAGGAACACTCTCCGAAAA-GTTGAAATCC 694
|| ||| ||||||||||||| ||| ||||| ||||||||||| || | ||||||| ||
Sbjct 759 TCCGTTTGATGTTTTCTACTTTAATCCCGAAAAGAACACTCTCC-AACACGTTGAAACCC 817
Query 695 A 695
|
Sbjct 818 A 818
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 93.5 bits (50), Expect = 3e-18
Identities = 103/128 (80%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 571 TCCGTTGCTGGAGTTACTGCTACAGGTGAAATTGTTTTGACCAAAGACTATACATCTACA 630
||||||| ||| | |||||| ||||||||||||||||| | || || | || | ||
Sbjct 923 TCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAA-GAAT-TA--TG--CA 976
Query 631 TCTAAACCTTTTTATGTTTTCTACTTCAATATCGAAAGGAACACTCTCCGAAAAGTTGAA 690
| ||||| |||||||||||||| || ||| ||| |||||||||||||||| ||||||
Sbjct 977 TAGAAACCGTTTTATGTTTTCTAATTTAATCCCGATAGGAACACTCTCCGAAGTGTTGAA 1036
Query 691 ATCCAAGG 698
||||||||
Sbjct 1037 ATCCAAGG 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5