BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343046
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10550.1 | Symbols: MTM1, AtMTM1 | Myotubularin-like phospha... 719 0.0
> AT3G10550.1 | Symbols: MTM1, AtMTM1 | Myotubularin-like phosphatases
II superfamily | chr3:3292899-3298522 REVERSE LENGTH=2904
Length=2904
Score = 719 bits (389), Expect = 0.0
Identities = 445/469 (95%), Gaps = 15/469 (3%)
Strand=Plus/Plus
Query 24 GAAGCTTTATATTGCCGATGCAAGACCTAGGAAGAATGCATTAGCCAATGGAGCAATGGG 83
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGG 1077
Query 84 AGGTGGCTCAGAATCACCTTCCAATTATTTTCAATCTCAAATTGTTTTCTTTGGCATAGA 143
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1078 AGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTTGGCATAGA 1137
Query 144 CAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGG 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGG 1197
Query 204 TACAACATCATCTGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGG 263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TACAACATCATCCGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGG 1257
Query 264 AGGTAATCTTAGTAGTATGTCTGCTTCAGTGTCTTTACTTGGAGATAGTGGCTGGTTGAT 323
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1258 AGGTAATCTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTGGCTGGTTGAT 1317
Query 324 ACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATAGCTGCACGTGTTGCTATGGAGTC 383
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1318 ACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATTGCTGCACGTGTTGCTATGGAGTC 1377
Query 384 GGCATCAGTTCTTGTGCACTGCAG--A---A-----CA-A-C---TCAGCTTGTTTCTCT 428
|||||||||||||||||||||||| | | || | | |||||||||||||||
Sbjct 1378 GGCATCAGTTCTTGTGCACTGCAGTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCT 1437
Query 429 TGCATGCTTCTTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG 477
||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG 1486
Score = 381 bits (206), Expect = 7e-105
Identities = 223/231 (97%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 836 GCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCTGCGGTGGGCTTGTCCCGAG 895
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1982 GCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCTCCGGTGGGCTTGTCCTGAG 2041
Query 896 GAA-CTAAAGCTGCAGATATCGGGGTCCAATGTAGAGCCATGACAGTGAAATATTCTGAA 954
||| |||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 2042 GAAGCTAAAGCTGCAGATATTGGAGTCCAATGTAGAGCCATGACAGTGAAATATTCCGAA 2101
Query 955 ATGCAAAAGGAGAAAGAAGTAGCAGAAAGAAGAGTGGACGAGATATCTTTCGCAATTGGA 1014
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2102 ATGCAAAAGGAGAAAGAAGCAGCAGAAAGAAGAGTGGACGAGATATCTTTCGCAA-TGGA 2160
Query 1015 GTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTGGGTAGCTAG 1065
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 GTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTGGGTAGCTAG 2211
Score = 220 bits (119), Expect = 2e-56
Identities = 123/125 (98%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 712 TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTCTCTCCG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1706 TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCG 1765
Query 772 ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCTTGTCGTTTTGGGAACTTCTTATGC 831
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1766 ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGC 1825
Query 832 AACAG 836
|||||
Sbjct 1826 AACAG 1830
Score = 196 bits (106), Expect = 3e-49
Identities = 116/121 (96%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 555 GGATTGGCTTGCTTTTGGGCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGG 614
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GGATTGGCTTGCTTTTGGTCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGG 1560
Query 615 ATCTGGTAATATTGACTTACCAAGGCAGTCTTCTTCTGCTGGAAGTTTCCCTTCATCTCC 674
|||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1561 ATCTGGTAATTTTGACTTTCCTAGGCAGTCTTCGTCTGCTGGAAGTTTCCCTTCATCTCC 1620
Query 675 T 675
|
Sbjct 1621 T 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5