BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343060
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14500.1 | Symbols: | F-box family protein | chr2:6166936-6... 601 4e-171
AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 117 2e-25
AT2G24080.1 | Symbols: | Protein of unknown function (DUF295) ... 113 2e-24
> AT2G14500.1 | Symbols: | F-box family protein | chr2:6166936-6167979
FORWARD LENGTH=1044
Length=1044
Score = 601 bits (325), Expect = 4e-171
Identities = 672/835 (80%), Gaps = 42/835 (5%)
Strand=Plus/Plus
Query 23 ATGGTTGCCTGTTGTACAATCCAGAGGAATACAGGATTTACAAATCCGTAAGAGACTTCT 82
|||||||| || ||||||||||||| ||| | |||||||||||||| || ||||||||||
Sbjct 179 ATGGTTGCGTGCTGTACAATCCAGACGAAGATAGGATTTACAAATCGGTGAGAGACTTCT 238
Query 83 CAGGGACTATGTTCCTTGCAAACTCGGGTAATTGGTTTCTTGTGATGGATTCTAAATCCA 142
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 CTGGGACTATATTCCTTGCAAACTCGGGTAATTGGTTTCTTGTAATGGATTCTAAATCCA 298
Query 143 ATCTCTATATCATAGATGTGTTTAGCGAGAATAGGATCGATCTTCCGCCTCTAGAGTCGT 202
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 ATCTCTATATAATAGATGTGTTTAGCGAGAATAGGATCGATCTTCCGCCTCTAGAGTC-T 357
Query 203 -TCCAGTCAGATTATTTTACCCTAGAGCGACTAGGAGATAAGAAATTCAAATTGCAAGTA 261
||| ||||||| | ||||| | |||| | ||| |||||| |||| |||| ||||| |
Sbjct 358 CTCCTGTCAGATAACTTTACTTTCGAGCAAAAAGGGGATAAGGAATTGAAATGGCAAGCA 417
Query 262 ACTGATCACCATGATGGTCATGTTTTTT-AC-AC-AATAGGC-GAAGTTTTAAGAGGTCT 317
|| || | || ||| | | |||||| | || || || | |||| ||||||||| |
Sbjct 418 TCTAATGATCA-GATTCT-A-GTTTTTAGATTACCAAGAG-CTGAAGAGTTAAGAGGTAT 473
Query 318 TTTGTGGGTAGACAAGAAAACAAAAGAGTTTGTTGTAGTTTGGTTCTTCGATTACAATTG 377
||||||||||||| |||||| ||||||||||||| |||||||||||| || || |||
Sbjct 474 TTTGTGGGTAGACGAGAAAATGAAAGAGTTTGTTGCAGTTTGGTTCTTGGAAGACTCTTG 533
Query 378 CAAATTTCTAGCCTATTGCAAGAAAGGTGGTGATCATTACAGTTACATTGAGA-TATGT- 435
||| ||| |||||| || |||||||| || ||||||||||||| ||||| | | || |
Sbjct 534 CAACTTTTTAGCCTTTTACAAGAAAGCTGATGATCATTACAGTCACATTCA-ACTA-GAA 591
Query 436 TACT-TCCTC-CCG--GAGTATCGAGGTGTATCAGATATGGTACTCCATGGTTACTTTCT 491
|| | || || ||| | || || | | ||||| ||||| ||||||||||||| ||||||
Sbjct 592 TA-TGTCATCACCGATGTGTTTCAAAGCGTATCTGATATTGTACTCCATGGTTGCTTTCT 650
Query 492 TTATATCGCTACGCCTCGTGGTTACATTCGATTCCTTGATTTGTCTAAACAAGAACGTTT 551
||| |||| | | | ||| |||||||| | || | |||||||||||| | || ||||
Sbjct 651 TTACATCGGT--GT-TGGTGATTACATTCAAATCATCGATTTGTCTAAAGACCAAGGTTT 707
Query 552 CGAGGAGGTTACTGGAATTTACCCATTGAAA-TGGTTTAAT---CCATGTTATTATAAAA 607
| |||| |||||| ||| ||| | ||| || || | ||| ||||| || | ||
Sbjct 708 CAAGGATGTTACTCGAAATTATCTATTCAACGTGCAT-AATGGACCATGGGGTTTTCGAA 766
Query 608 CCAATTGTAGCATTGTGGTTACAACAGCAGGAGAGGTTTTAATG-TTCCAGAACAACCTT 666
| || || | |||||||||||||| ||||||||||||| ||| ||| | ||||| |||
Sbjct 767 GTATTTTTAACCTTGTGGTTACAACATCAGGAGAGGTTTTGATGGTTCTA-AACAATCTT 825
Query 667 GACAAGAAAAACATTGAAAGTGATAAGAGCTTCCG-ACTCTACAAGCACGG-TCCTAATG 724
|| ||||||| |||||||| || ||||||||||| | ||| |||| | || |||||||
Sbjct 826 TACGAGAAAAATATTGAAAGCGAGAAGAGCTTCCGCA-TCTTCAAGAA-GGATCCTAATC 883
Query 725 AA-ATT-AATTA--CTACGACC-CGCCGCTTGTTGAGGTAGATTCTCTAGG-AGATGAAG 778
| | || || | ||||| | |||||||||||||||||||||||| | ||||||
Sbjct 884 CAGACCCAAATAAAC-ACGACAACTT-GCTTGTTGAGGTAGATTCTCTAGGTA-ATGAAG 940
Query 779 AGGCTCTGCTTCTTGACTTGGGTATCACTATGCCTGGTATCGAACCAAACTCCAT 833
||| | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 941 AGGTTATGCTTCTTGACTTGGGTATCACTATGCATGGTATCGAACCAAACTCCAT 995
> AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana
protein match is: F-box family protein with a domain
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast
hits to 224 proteins in 5 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093
FORWARD LENGTH=1434
Length=1434
Score = 117 bits (63), Expect = 2e-25
Identities = 109/130 (84%), Gaps = 8/130 (6%)
Strand=Plus/Plus
Query 72 AAGAGACTTCTCAGGGACTAT-G-TTCCTT-GCAAACTCGGGTAATTGGTTTCTT-GTGA 127
|||||||| |||||||| | | | || ||| |||||||| | ||| ||| ||||| |||
Sbjct 123 AAGAGACTCCTCAGGGA-T-TCGATT-CTTGGCAAACTCAGTTAACTGG-TTCTTGGTGC 178
Query 128 TGGATTCTAAATCCAATCTCTATATCATAGATGTGTTTAGCGAGAATAGGATCGATCTTC 187
| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 179 TAGATTCTCGTTCCAATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTC 238
Query 188 CGCCTCTAGA 197
| || |||||
Sbjct 239 CACCCCTAGA 248
> AT2G24080.1 | Symbols: | Protein of unknown function (DUF295)
| chr2:10237604-10238779 REVERSE LENGTH=1125
Length=1125
Score = 113 bits (61), Expect = 2e-24
Identities = 137/172 (80%), Gaps = 12/172 (7%)
Strand=Plus/Plus
Query 35 TGTACAATCCAGAGGAATACAGGATTTACAAATCCGTAAGA--GACTTCTCAGGGACTAT 92
||||||| ||||| ||| | | | ||||| | || |||| ||||| |||||| |||
Sbjct 161 TGTACAAGCCAGACGAAGATAAGTTTTAC-GAGACG-AAGAGTGACTTTTCAGGG--TAT 216
Query 93 -G-TTCCTTGCAAACTCGGGTAATTGGTTTCTTGTGATGGATTCTAAATCCAATCTCTAT 150
| ||||| |||| ||||||||| ||||| || ||| | ||||||| || ||||||||
Sbjct 217 CGATTCCTAGCAAGCTCGGGTAAGTGGTTCCTAGTGGTAGATTCTAGATGGGATCTCTAT 276
Query 151 ATCATAGATGTGTTTAGCGA-GAATAGGATC-GATCTTCCGCCTCTAGAGTC 200
|||||||||||||||||||| || |||||| | |||||| |||||||||||
Sbjct 277 ATCATAGATGTGTTTAGCGATGAG-AGGATCAG-TCTTCCACCTCTAGAGTC 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5