BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343072

Length=1122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33770.1 | Symbols:  | Inositol 1,3,4-trisphosphate 5/6-kina...   315    8e-85


> AT4G33770.1 | Symbols:  | Inositol 1,3,4-trisphosphate 5/6-kinase 
family protein | chr4:16193422-16196428 REVERSE LENGTH=1529
Length=1529

 Score =  315 bits (170),  Expect = 8e-85
 Identities = 273/323 (85%), Gaps = 6/323 (2%)
 Strand=Plus/Plus

Query  697   GGTGGAGTTCTCTTCAAGGTTTTTGTTGTTGGTGATGTGATAAAGGTGGTCCGTCGGTTT  756
             ||||||||| | |||||||| ||||| || |||||||| ||||| ||  |  | ||||||
Sbjct  949   GGTGGAGTTATGTTCAAGGTATTTGTGGTGGGTGATGTTATAAAAGTCATGAGACGGTTT  1008

Query  757   TCTCTACCCAATGTAAGCAATTGTGAGAAAGACAAAGTTGCTGGTGTATTTCAATTCCCG  816
             |||||||| ||||| || |||||||| |||| |||||||| ||| || || |||||||| 
Sbjct  1009  TCTCTACCAAATGTGAGTAATTGTGAAAAAGCCAAAGTTGATGGCGTCTTCCAATTCCCA  1068

Query  817   AGGGTATCATC-GTCTGCAGCTTCAG-TAGACAAAACAGACTTAGACCCTCGTGTTGCTG  874
             ||||| ||||| | |||| ||||||| | || ||  ||||||| ||||||||||||||||
Sbjct  1069  AGGGTTTCATCAG-CTGCTGCTTCAGCT-GATAACGCAGACTTGGACCCTCGTGTTGCTG  1126

Query  875   AGCTACCTCCAAAGCCTTTTCTCGAGGGGCTTGTGAGAGAATTACGAAACCGATTGGGAC  934
             ||||||||||||||||||| ||||||| |||||||| |||  || ||| |  ||||||||
Sbjct  1127  AGCTACCTCCAAAGCCTTTCCTCGAGGCGCTTGTGAAAGAGCTAAGAAGCTTATTGGGAC  1186

Query  935   T-CAGGCTGTTCAACATAGATATGATCAGAGAACATGGGAGCAGAGATGTGTTTTATGTC  993
             | | |||| ||||||||||| |||||||| ||||||||||||| | | ||||||||||| 
Sbjct  1187  TTC-GGCTTTTCAACATAGACATGATCAGGGAACATGGGAGCAAAAACGTGTTTTATGTT  1245

Query  994   ATTGACATCAACTATTTTCCTGG  1016
             |||||||||||||||||||||||
Sbjct  1246  ATTGACATCAACTATTTTCCTGG  1268



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55019797320


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5