BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343087
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63390.1 | Symbols: | O-fucosyltransferase family protein |... 326 3e-88
AT4G30240.1 | Symbols: | Syntaxin/t-SNARE family protein | chr... 324 1e-87
AT3G13235.1 | Symbols: | ubiquitin family protein | chr3:42712... 73.1 5e-12
> AT5G63390.1 | Symbols: | O-fucosyltransferase family protein
| chr5:25390512-25392591 REVERSE LENGTH=1680
Length=1680
Score = 326 bits (176), Expect = 3e-88
Identities = 198/209 (95%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 146 GAGGTGAGCTGTTTGGTGGCTCACGAGCATTAGAGCCTCTAGCGAAAGAGTTCTCTAATT 205
||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1229 GAGGTGAACCATTTGGTGGCTCACGAGCATTAGAGCCTCTCGCTAAAGAGTTCTCTAATT 1288
Query 206 TGGTGACAAAGGAGACATTGGCTCATAAAGGCGAGCTCTTGCCTTACACCAATAGATCCT 265
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1289 TGGTGACAAAGGAGACATTGGCTCATAAAGGCGAGCTCTTGCCTTACACCAATAGATCTT 1348
Query 266 CAGCTTTAGCAGCTATTGACTACATCGTATCACTTAGCAGCGACGTTTTTCTTCCTTCTC 325
||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
Sbjct 1349 CAGCTTTAGCAGCTATTGACTACATTGTATCACTTAGCAGCGATGTTTTTATTCCTTCCC 1408
Query 326 ATGGTGGTAACATGGCAAAAGCTATGCAG 354
||||||| |||||||||||||||||||||
Sbjct 1409 ATGGTGGAAACATGGCAAAAGCTATGCAG 1437
> AT4G30240.1 | Symbols: | Syntaxin/t-SNARE family protein | chr4:14807919-14809985
REVERSE LENGTH=1497
Length=1497
Score = 324 bits (175), Expect = 1e-87
Identities = 210/227 (93%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 713 ACATTGACGAGAGAGGAAGTCTTGAAAGTGGTGAT-AAAAAGGCTGGTACAAGAAGAAGA 771
|||||||||| | |||||||| ||||||| ||| |||||||| ||||||||||||| |
Sbjct 800 ACATTGACGACATAGGAAGTCCGGAAAGTGCAGATAAAAAAGGC-GGTACAAGAAGAACA 858
Query 772 TGGAGTTCACCAAATGTACCGAATATCAGTGCGTTGAGGATTAATGTTCCTGTTAATGCA 831
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 859 TGGAGTTCACCAAATGTACCAAATATCAGTGCGTTGAGGATTAATGTCCCTGTTAATGCA 918
Query 832 AAAGAAGAAGAGAGGGAGAAGTTCCTGTCACAAATCGAAGACACTCCTAAAGAAAAAGGA 891
|||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 919 AAAGAAGAAGAGAGGGAGAAGTTCCTATCACATATTGAAGACACTCCTAAAGAGAAAGGA 978
Query 892 TCTAAACCTCTGTTTTGGCTGCAGAGATGTCGTGATTATAACCAGCT 938
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 979 GCTAAACCTATGTTTTGGCTGCAGAGATGTCGTGATTATAACCAGCT 1025
Score = 268 bits (145), Expect = 6e-71
Identities = 157/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 547 TTAAACGAGAATGGGAAACAACCTTTGCGTTGGGTGAATCTTAACAAAGAAGAGCGTGAT 606
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 574 TTAAGCGAGAATGGGAAACAACCTTTGCGTTGGGTGGATCTTAACAAAGAAGAGCGTGAT 633
Query 607 GACCTTGCCATGTTTCTATCTGGATCTTCTCAGACATCAGAGAGTTTAAACAGTGATAGC 666
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 634 GATCTCGCCATGTTTCTATCTGGATCTTCTCAGACGTCAGAGAGTTTAAACAGTGATAGC 693
Query 667 ATCAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGTATC 709
||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 ATCAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGAATC 736
> AT3G13235.1 | Symbols: | ubiquitin family protein | chr3:4271258-4274455
REVERSE LENGTH=1586
Length=1586
Score = 73.1 bits (39), Expect = 5e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 101 AGAATGATACTGAGCTTGCACAAGTGATTTCTGGAAGGGATTTAA 145
|||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 457 AGAATGATCCTGAGCTTGCACAAGTGATTTCTGGAAGCGATTTAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5