BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg343089 Length=2835 Score E Sequences producing significant alignments: (Bits) Value AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3768 0.0 AT5G14040.1 | Symbols: PHT3;1 | phosphate transporter 3;1 | chr... 134 6e-30 > AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=2478 Length=2478 Score = 3768 bits (2040), Expect = 0.0 Identities = 2295/2416 (95%), Gaps = 26/2416 (1%) Strand=Plus/Plus Query 1 ATGAAACTTTATTGC-AGTGCTAATGAAGTCCGCTCAAGAACTCTTGCCACTTTACGGCA 59 ||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||| Sbjct 1 ATGAAACTTTATTGCAACT-CTAATGAAGTCCGCTCACGAACTCTTGCCACTTTACGGCA 59 Query 60 GCTCCGACAACCGCCACC-G-G--------CG--ACACGACGTGTTGATGCTCGCATCAT 107 ||||||||||||| |||| | | || |||||||||||||||||||||||||| Sbjct 60 GCTCCGACAACCGTCACCGGCGACATTTCTCGACACACGACGTGTTGATGCTCGCATCAT 119 Query 108 TAAAACTGGCTTCAACACAGATACGTGTCGCTCCAATTTCACCGTGGAGGACCTACTCAG 167 ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||| Sbjct 120 TAAAACTGGCTTCGACACAGATACGTGTCGCTCCAATTTCATCGTCGAGGACCTTCTCAG 179 Query 168 GAGAGGTCAAGTTTCTGCTGCACGCAAGGTGTACGACGAAATGCCTCACAAGAACACTGT 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GAGAGGTCAAGTTTCTGCTGCACGCAAGGTGTACGACGAAATGCCTCACAAGAACACTGT 239 Query 228 CTCCACCAATACCATGATTTCCGGGT-ACGTGAAGATGGGTGATCTTTCTAGCGCCCGAC 286 |||||||||||||||||||||| ||| ||||||||| ||||||| |||| ||||||||| Sbjct 240 CTCCACCAATACCATGATTTCC-GGTCACGTGAAGACGGGTGATGTTTCCAGCGCCCGAG 298 Query 287 ACCTTTTCGACGCAATGCCCGATAGAACTGTTGTCACTTGGACTATCTTGATGGGCTGGT 346 ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 299 ACCTTTTTGACGCAATGCCCGACAGAACTGTTGTCACGTGGACTATCTTGATGGGGTGGT 358 Query 347 ACG-CCGGCAACAACCAATTCGATGAAGCTTTCAAGCTTTTCCGTCAAATGTGCAGG--- 402 ||| |||| |||| ||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 359 ACGCCCGG-AACAGCCACTTCGATGAAGCTTTCAAGCTTTTCCGTCAGATGTGCAGGTCT 417 Query 403 TC-T--TGTACCCTTCCCGATTACGTCACCTTTACTACGCTTTTACCAGGCTGCAATGAC 459 || | |||||||| |||||| | |||||||||||||||||||||||||||||||||||| Sbjct 418 TCTTCCTGTACCCTGCCCGATCATGTCACCTTTACTACGCTTTTACCAGGCTGCAATGAC 477 Query 460 GCTGTTCCCCAGAACGCGGTCGGTCAAGTTCATGCTTTTGCCGTCAAGTTAGGCTTTGAT 519 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 478 GCTGTTCCCCAGAACGCGGTCGGTCAGGTTCATGCTTTTGCCGTCAAGTTAGGCTTTGAT 537 Query 520 ACCAACCTCTTTCTCACTGTCTGCAATGTTCTGCTTAAGTCTTACTGTGAGGTAAGGCGA 579 ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 538 ACCAACCCCTTTCTCACTGTCTCCAATGTTCTGCTTAAGTCCTACTGTGAGGTAAGGCGA 597 Query 580 CTCGATTTAGCCTGTGTGTTGTTCGAGGAGATTCTAGATAAAGACTCTGTCACATTCAAC 639 |||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| Sbjct 598 CTCGATTTAGCCTGTGTGTTGTTCGAGGAGATTCCAGAGAAAGACTCTGTCACGTTCAAC 657 Query 640 ACCCTTATCACAGGGTATGAGAAGGATGGTTTGTACACGGAGGCGATTCATCTCTTTCTT 699 |||||||| |||||||| ||||||||||| |||||||||||| | || |||||||||||| Sbjct 658 ACCCTTATTACAGGGTACGAGAAGGATGGCTTGTACACGGAGTCCATCCATCTCTTTCTT 717 Query 700 AAAATGCGGCAGTCTGGTCACAAGCCTTCAGATTTCACTTTTTCTGGGGTTCTCAAGGCT 759 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 718 AAAATGCGGCAGTCTGGTCACCAGCCTTCAGATTTCACATTTTCTGGGGTTCTCAAGGCT 777 Query 760 GTTGTTGGGTTACACGATTTTGCTCTTGGTCAGCAACTCCATGGTCTGTCAGTTACTACC 819 ||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 778 GTTGTTGGGCTGCACGATTTTGCTCTTGGTCAGCAACTCCATGCTCTGTCAGTTACTACC 837 Query 820 GGCTTTTCCAGGGATGCTTCTGTTGGGAATCAAATTCTTCATTTCTACTCCAAACATGAC 879 ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 838 GGCTTCTCCAGGGATGCTTCTGTTGGCAATCAAATTCTTGATTTCTACTCCAAACATGAC 897 Query 880 CGTGTTCTTGAAACTAGGAAT-CTTTTTAATGAAATGCCTGAGTTGGATTTTGTTTCTTA 938 |||||||||||||||||| || |||||| |||| |||||||||||||||||||||||||| Sbjct 898 CGTGTTCTTGAAACTAGG-ATGCTTTTTGATGAGATGCCTGAGTTGGATTTTGTTTCTTA 956 Query 939 CAATGTGGTCATCTCAAGCTATTCACAGGCTGAGCAGTACGAGGAATCGCTCAACTTGTT 998 ||||||||||||||||||||| ||||||||||| || ||||||| ||| ||| |||| || Sbjct 957 CAATGTGGTCATCTCAAGCTACTCACAGGCTGATCAATACGAGGCATCCCTCCACTTCTT 1016 Query 999 TAGAGAAATGCAGTGCATGGGGTTTGATCGCAGAAACTTCCCTTTCGCTACGATGCTGAG 1058 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1017 TAGAGAAATGCAGTGCATGGGGTTTGATCGCAGAAACTTCCCTTTCGCGACGATGCTGAG 1076 Query 1059 CATCGCAGCTAACTTGTCATCCTTGCAGGTGGGTCGACAAGTGCACTGCCAGGCCATCGT 1118 |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| || | Sbjct 1077 CATCGCTGCTAACTTGTCATCCTTGCAGATGGGTCGACAATTGCACTGCCAGGCCCTCCT 1136 Query 1119 GGCAACGGCTGATTCAATCCTCCATGTTGGGAATTCTTTAGTAGATATGTATGCAAAATG 1178 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1137 GGCAACGGCTGATTCAATCCTTCATGTTGGGAATTCTTTAGTAGATATGTATGCAAAATG 1196 Query 1179 CGAAATGTTCGACGAAGCTGAGTTGATATTCAAGAGTTTATCACAACGGAGCACCGTTTC 1238 |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1197 CGAAATGTTCGAGGAAGCTGAGTTGATATTCAAGAGTTTACCACAACGGACCACCGTTTC 1256 Query 1239 CTGGACTGCCTTGATCTCAGGTTACGTTCAGAAAGGGCTTCATGGAGCTGGGCTTAAGTT 1298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1257 CTGGACTGCCTTGATCTCAGGTTACGTTCAGAAAGGGCTTCATGGAGCTGGGCTTAAGTT 1316 Query 1299 GTTCACCAAGATGCGAGGAGCAAATTTACGAGCAGACCAATCAACTTTTGCTACTGTATT 1358 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1317 GTTCACCAAGATGCGAGGATCAAATTTACGAGCAGACCAATCAACTTTTGCTACTGTATT 1376 Query 1359 GAAAGCTTCCGCTGGTTTTGCTTCTCTGTTGCTCGGGAAACAACTCCATGCATTCATAAT 1418 ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1377 GAAAGCTTCCGCTAGTTTCGCTTCTCTGTTGCTGGGGAAACAACTCCATGCATTCATAAT 1436 Query 1419 CAGATCAGGGAACTTGGAAAATGTCTTCTCCGGAAGTGGCCTGGTTGATATGTACGCCAA 1478 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1437 CAGATCAGGGAACTTGGAAAATGTGTTCTCCGGAAGTGGCCTGGTTGATATGTACGCCAA 1496 Query 1479 ATGTGGTTCTATCAAAGATGCAGTTCAAGTATTCGAAGAGATGCCCGATAGAAATGCAGT 1538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 ATGTGGTTCTATCAAAGATGCAGTTCAAGTATTCGAAGAGATGCCCGATAGAAATGCAGT 1556 Query 1539 TTCCTGGAATGCTTTGATTTCTGCATACGCTGATAACGGAGATGGAGAAGCAGCTATTGG 1598 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1557 TTCCTGGAATGCTTTGATTTCAGCACACGCTGATAACGGAGATGGAGAAGCAGCTATTGG 1616 Query 1599 TGCATTTACAAAGATGATTCAATCTGGTCTCCAGCCAGATTCAGTCAGCATCCTAGGCGT 1658 ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1617 TGCATTTGCAAAGATGATTGAATCTGGTCTCCAGCCAGATTCAGTCAGCATCTTAGGCGT 1676 Query 1659 CTTGATTGCATGTAGTCACTGTGGATTTGTTGAACAAGGAACAGAATTTTTCCAGGCAAT 1718 ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1677 CTTAACTGCATGTAGTCACTGTGGATTTGTTGAACAAGGAACAGAATATTTCCAGGCAAT 1736 Query 1719 GTCTCCAATCTATGGGATAACTCCaaaaaaaaaaCATTATGCATGCATGCTGGATTTGCT 1778 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1737 GTCTCCAATCTATGGGATAACTCCAAAAAAGAAGCATTATGCATGCATGCTGGATTTGCT 1796 Query 1779 TGGTAGAAACGGAAGATTTGCAGAAGCAGAGAAGTTGATGGACGAAATGCCCTTTGAGCC 1838 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1797 TGGCAGAAACGGAAGATTTGCAGAAGCAGAGAAGTTGATGGACGAAATGCCCTTTGAGCC 1856 Query 1839 AGATGAAATTATGTGGTCGTCAGTTTTGAACGCATGTCGGATTTACAAGAATCAAAGCCT 1898 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 1857 AGATGAAATTATGTGGTCGTCAGTGTTGAACGCATGTCGGATTCACAAGAATCAAAGCCT 1916 Query 1899 TGCTGAGAGAGCAGCAGAGCAGCTCTTCAGTATGGAGAAGCTCAGGGACGCCGCTGCTTA 1958 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1917 TGCTGAGAGAGCAGCAGAGAAGCTCTTCAGTATGGAGAAGCTCAGGGACGCTGCTGCTTA 1976 Query 1959 TGTAAGCATGTCAAACATCTATGCAGCGGCTGGGAAATGGGAAAACGTTAGGCATGTGAA 2018 |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| Sbjct 1977 TGTAAGCATGTCAAACATCTATGCAGCGGCTGGGGAATGGGAAAAAGTTAGGGATGTGAA 2036 Query 2019 GAAAGCAATGCGCGAACGCGGAATCAAAAAGGTTCCGGCTTATAGCTGGGTTGAAGTTAA 2078 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2037 GAAAGCAATGCGCGAACGCGGAATCAAAAAGGTTCCGGCTTATAGCTGGGTAGAAGTTAA 2096 Query 2079 CCACAAGATCCATGTGTTCTCATCAAATGATCAAACACACCCAAACGGAGATGAGATCGT 2138 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2097 CCACAAGATTCATGTGTTCTCATCAAATGATCAGACACACCCAAACGGAGATGAGATCGT 2156 Query 2139 GAAAAAGATCAATGAATTGACAGCTGAGATTGAGAGAGATGGGTACAAGCCTGACACGAG 2198 || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 2157 GAGAAAGATCAATGAATTGACAGCTGAGATTGAGAGAGAAGGGTACAAGCCTGACACTAG 2216 Query 2199 TTCGGTAGTTCAAGACATAGATGAGCAGATGAAGATTGAGTCGCTTAAATACCACAGTGA 2258 ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2217 TTCGGTAGTACAAGACGTAGATGAGCAGATGAAGATTGAGTCGCTTAAGTACCACAGTGA 2276 Query 2259 ACGTTTAGCTGTTGCATTTGCTCTGATCAGTACACCAGAAGGGTGTCCGATTGTTGTGAT 2318 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2277 ACGTTTAGCCGTTGCATTTGCTCTGATCAGTACACCAGAAGGGTGTCCGATTGTTGTGAT 2336 Query 2319 GAAGAACTTGAGGGCCTGCAGGGATTGCCATGCTGCAATAAAACTAATATCGAAGATTGT 2378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2337 GAAGAACTTGAGGGCCTGCAGGGATTGCCATGCTGCAATAAAACTAATATCGAAGATTGT 2396 Query 2379 AAAGAGGGTGATAACT 2394 |||||||| ||||||| Sbjct 2397 AAAGAGGGAGATAACT 2412 > AT5G14040.1 | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4530643-4533070 REVERSE LENGTH=1649 Length=1649 Score = 134 bits (72), Expect = 6e-30 Identities = 103/117 (88%), Gaps = 5/117 (4%) Strand=Plus/Plus Query 2395 ACACAGCCTGGATTTGCCAGGGGAATGTCTGATGGATTTCCCAAGTTTATCAAGTCTGAA 2454 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| Sbjct 718 ACACAGCCTGGATTTGCTAGGGGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAA 777 Query 2455 GG-T-CTTGGAGGTTTGTACAAGGGAATTGGTCCACTTTGGGG-CGTCAGATTCCTT 2508 || | | ||||| ||||| ||||| ||| |||||| ||||| ||||||||||||| Sbjct 778 GGATAC--GGAGGCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT 832 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 140868775944 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5