BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343089
Length=2835
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3768 0.0
AT5G14040.1 | Symbols: PHT3;1 | phosphate transporter 3;1 | chr... 134 6e-30
> AT3G02010.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:337965-340442 FORWARD LENGTH=2478
Length=2478
Score = 3768 bits (2040), Expect = 0.0
Identities = 2295/2416 (95%), Gaps = 26/2416 (1%)
Strand=Plus/Plus
Query 1 ATGAAACTTTATTGC-AGTGCTAATGAAGTCCGCTCAAGAACTCTTGCCACTTTACGGCA 59
||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGAAACTTTATTGCAACT-CTAATGAAGTCCGCTCACGAACTCTTGCCACTTTACGGCA 59
Query 60 GCTCCGACAACCGCCACC-G-G--------CG--ACACGACGTGTTGATGCTCGCATCAT 107
||||||||||||| |||| | | || ||||||||||||||||||||||||||
Sbjct 60 GCTCCGACAACCGTCACCGGCGACATTTCTCGACACACGACGTGTTGATGCTCGCATCAT 119
Query 108 TAAAACTGGCTTCAACACAGATACGTGTCGCTCCAATTTCACCGTGGAGGACCTACTCAG 167
||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 120 TAAAACTGGCTTCGACACAGATACGTGTCGCTCCAATTTCATCGTCGAGGACCTTCTCAG 179
Query 168 GAGAGGTCAAGTTTCTGCTGCACGCAAGGTGTACGACGAAATGCCTCACAAGAACACTGT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGAGGTCAAGTTTCTGCTGCACGCAAGGTGTACGACGAAATGCCTCACAAGAACACTGT 239
Query 228 CTCCACCAATACCATGATTTCCGGGT-ACGTGAAGATGGGTGATCTTTCTAGCGCCCGAC 286
|||||||||||||||||||||| ||| ||||||||| ||||||| |||| |||||||||
Sbjct 240 CTCCACCAATACCATGATTTCC-GGTCACGTGAAGACGGGTGATGTTTCCAGCGCCCGAG 298
Query 287 ACCTTTTCGACGCAATGCCCGATAGAACTGTTGTCACTTGGACTATCTTGATGGGCTGGT 346
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 299 ACCTTTTTGACGCAATGCCCGACAGAACTGTTGTCACGTGGACTATCTTGATGGGGTGGT 358
Query 347 ACG-CCGGCAACAACCAATTCGATGAAGCTTTCAAGCTTTTCCGTCAAATGTGCAGG--- 402
||| |||| |||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 359 ACGCCCGG-AACAGCCACTTCGATGAAGCTTTCAAGCTTTTCCGTCAGATGTGCAGGTCT 417
Query 403 TC-T--TGTACCCTTCCCGATTACGTCACCTTTACTACGCTTTTACCAGGCTGCAATGAC 459
|| | |||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTTCCTGTACCCTGCCCGATCATGTCACCTTTACTACGCTTTTACCAGGCTGCAATGAC 477
Query 460 GCTGTTCCCCAGAACGCGGTCGGTCAAGTTCATGCTTTTGCCGTCAAGTTAGGCTTTGAT 519
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 GCTGTTCCCCAGAACGCGGTCGGTCAGGTTCATGCTTTTGCCGTCAAGTTAGGCTTTGAT 537
Query 520 ACCAACCTCTTTCTCACTGTCTGCAATGTTCTGCTTAAGTCTTACTGTGAGGTAAGGCGA 579
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 538 ACCAACCCCTTTCTCACTGTCTCCAATGTTCTGCTTAAGTCCTACTGTGAGGTAAGGCGA 597
Query 580 CTCGATTTAGCCTGTGTGTTGTTCGAGGAGATTCTAGATAAAGACTCTGTCACATTCAAC 639
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 598 CTCGATTTAGCCTGTGTGTTGTTCGAGGAGATTCCAGAGAAAGACTCTGTCACGTTCAAC 657
Query 640 ACCCTTATCACAGGGTATGAGAAGGATGGTTTGTACACGGAGGCGATTCATCTCTTTCTT 699
|||||||| |||||||| ||||||||||| |||||||||||| | || ||||||||||||
Sbjct 658 ACCCTTATTACAGGGTACGAGAAGGATGGCTTGTACACGGAGTCCATCCATCTCTTTCTT 717
Query 700 AAAATGCGGCAGTCTGGTCACAAGCCTTCAGATTTCACTTTTTCTGGGGTTCTCAAGGCT 759
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 718 AAAATGCGGCAGTCTGGTCACCAGCCTTCAGATTTCACATTTTCTGGGGTTCTCAAGGCT 777
Query 760 GTTGTTGGGTTACACGATTTTGCTCTTGGTCAGCAACTCCATGGTCTGTCAGTTACTACC 819
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 GTTGTTGGGCTGCACGATTTTGCTCTTGGTCAGCAACTCCATGCTCTGTCAGTTACTACC 837
Query 820 GGCTTTTCCAGGGATGCTTCTGTTGGGAATCAAATTCTTCATTTCTACTCCAAACATGAC 879
||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 838 GGCTTCTCCAGGGATGCTTCTGTTGGCAATCAAATTCTTGATTTCTACTCCAAACATGAC 897
Query 880 CGTGTTCTTGAAACTAGGAAT-CTTTTTAATGAAATGCCTGAGTTGGATTTTGTTTCTTA 938
|||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||
Sbjct 898 CGTGTTCTTGAAACTAGG-ATGCTTTTTGATGAGATGCCTGAGTTGGATTTTGTTTCTTA 956
Query 939 CAATGTGGTCATCTCAAGCTATTCACAGGCTGAGCAGTACGAGGAATCGCTCAACTTGTT 998
||||||||||||||||||||| ||||||||||| || ||||||| ||| ||| |||| ||
Sbjct 957 CAATGTGGTCATCTCAAGCTACTCACAGGCTGATCAATACGAGGCATCCCTCCACTTCTT 1016
Query 999 TAGAGAAATGCAGTGCATGGGGTTTGATCGCAGAAACTTCCCTTTCGCTACGATGCTGAG 1058
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 TAGAGAAATGCAGTGCATGGGGTTTGATCGCAGAAACTTCCCTTTCGCGACGATGCTGAG 1076
Query 1059 CATCGCAGCTAACTTGTCATCCTTGCAGGTGGGTCGACAAGTGCACTGCCAGGCCATCGT 1118
|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 1077 CATCGCTGCTAACTTGTCATCCTTGCAGATGGGTCGACAATTGCACTGCCAGGCCCTCCT 1136
Query 1119 GGCAACGGCTGATTCAATCCTCCATGTTGGGAATTCTTTAGTAGATATGTATGCAAAATG 1178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGCAACGGCTGATTCAATCCTTCATGTTGGGAATTCTTTAGTAGATATGTATGCAAAATG 1196
Query 1179 CGAAATGTTCGACGAAGCTGAGTTGATATTCAAGAGTTTATCACAACGGAGCACCGTTTC 1238
|||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1197 CGAAATGTTCGAGGAAGCTGAGTTGATATTCAAGAGTTTACCACAACGGACCACCGTTTC 1256
Query 1239 CTGGACTGCCTTGATCTCAGGTTACGTTCAGAAAGGGCTTCATGGAGCTGGGCTTAAGTT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTGGACTGCCTTGATCTCAGGTTACGTTCAGAAAGGGCTTCATGGAGCTGGGCTTAAGTT 1316
Query 1299 GTTCACCAAGATGCGAGGAGCAAATTTACGAGCAGACCAATCAACTTTTGCTACTGTATT 1358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTTCACCAAGATGCGAGGATCAAATTTACGAGCAGACCAATCAACTTTTGCTACTGTATT 1376
Query 1359 GAAAGCTTCCGCTGGTTTTGCTTCTCTGTTGCTCGGGAAACAACTCCATGCATTCATAAT 1418
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 GAAAGCTTCCGCTAGTTTCGCTTCTCTGTTGCTGGGGAAACAACTCCATGCATTCATAAT 1436
Query 1419 CAGATCAGGGAACTTGGAAAATGTCTTCTCCGGAAGTGGCCTGGTTGATATGTACGCCAA 1478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 CAGATCAGGGAACTTGGAAAATGTGTTCTCCGGAAGTGGCCTGGTTGATATGTACGCCAA 1496
Query 1479 ATGTGGTTCTATCAAAGATGCAGTTCAAGTATTCGAAGAGATGCCCGATAGAAATGCAGT 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATGTGGTTCTATCAAAGATGCAGTTCAAGTATTCGAAGAGATGCCCGATAGAAATGCAGT 1556
Query 1539 TTCCTGGAATGCTTTGATTTCTGCATACGCTGATAACGGAGATGGAGAAGCAGCTATTGG 1598
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1557 TTCCTGGAATGCTTTGATTTCAGCACACGCTGATAACGGAGATGGAGAAGCAGCTATTGG 1616
Query 1599 TGCATTTACAAAGATGATTCAATCTGGTCTCCAGCCAGATTCAGTCAGCATCCTAGGCGT 1658
||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1617 TGCATTTGCAAAGATGATTGAATCTGGTCTCCAGCCAGATTCAGTCAGCATCTTAGGCGT 1676
Query 1659 CTTGATTGCATGTAGTCACTGTGGATTTGTTGAACAAGGAACAGAATTTTTCCAGGCAAT 1718
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1677 CTTAACTGCATGTAGTCACTGTGGATTTGTTGAACAAGGAACAGAATATTTCCAGGCAAT 1736
Query 1719 GTCTCCAATCTATGGGATAACTCCaaaaaaaaaaCATTATGCATGCATGCTGGATTTGCT 1778
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1737 GTCTCCAATCTATGGGATAACTCCAAAAAAGAAGCATTATGCATGCATGCTGGATTTGCT 1796
Query 1779 TGGTAGAAACGGAAGATTTGCAGAAGCAGAGAAGTTGATGGACGAAATGCCCTTTGAGCC 1838
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TGGCAGAAACGGAAGATTTGCAGAAGCAGAGAAGTTGATGGACGAAATGCCCTTTGAGCC 1856
Query 1839 AGATGAAATTATGTGGTCGTCAGTTTTGAACGCATGTCGGATTTACAAGAATCAAAGCCT 1898
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1857 AGATGAAATTATGTGGTCGTCAGTGTTGAACGCATGTCGGATTCACAAGAATCAAAGCCT 1916
Query 1899 TGCTGAGAGAGCAGCAGAGCAGCTCTTCAGTATGGAGAAGCTCAGGGACGCCGCTGCTTA 1958
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1917 TGCTGAGAGAGCAGCAGAGAAGCTCTTCAGTATGGAGAAGCTCAGGGACGCTGCTGCTTA 1976
Query 1959 TGTAAGCATGTCAAACATCTATGCAGCGGCTGGGAAATGGGAAAACGTTAGGCATGTGAA 2018
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 1977 TGTAAGCATGTCAAACATCTATGCAGCGGCTGGGGAATGGGAAAAAGTTAGGGATGTGAA 2036
Query 2019 GAAAGCAATGCGCGAACGCGGAATCAAAAAGGTTCCGGCTTATAGCTGGGTTGAAGTTAA 2078
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2037 GAAAGCAATGCGCGAACGCGGAATCAAAAAGGTTCCGGCTTATAGCTGGGTAGAAGTTAA 2096
Query 2079 CCACAAGATCCATGTGTTCTCATCAAATGATCAAACACACCCAAACGGAGATGAGATCGT 2138
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2097 CCACAAGATTCATGTGTTCTCATCAAATGATCAGACACACCCAAACGGAGATGAGATCGT 2156
Query 2139 GAAAAAGATCAATGAATTGACAGCTGAGATTGAGAGAGATGGGTACAAGCCTGACACGAG 2198
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2157 GAGAAAGATCAATGAATTGACAGCTGAGATTGAGAGAGAAGGGTACAAGCCTGACACTAG 2216
Query 2199 TTCGGTAGTTCAAGACATAGATGAGCAGATGAAGATTGAGTCGCTTAAATACCACAGTGA 2258
||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2217 TTCGGTAGTACAAGACGTAGATGAGCAGATGAAGATTGAGTCGCTTAAGTACCACAGTGA 2276
Query 2259 ACGTTTAGCTGTTGCATTTGCTCTGATCAGTACACCAGAAGGGTGTCCGATTGTTGTGAT 2318
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2277 ACGTTTAGCCGTTGCATTTGCTCTGATCAGTACACCAGAAGGGTGTCCGATTGTTGTGAT 2336
Query 2319 GAAGAACTTGAGGGCCTGCAGGGATTGCCATGCTGCAATAAAACTAATATCGAAGATTGT 2378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337 GAAGAACTTGAGGGCCTGCAGGGATTGCCATGCTGCAATAAAACTAATATCGAAGATTGT 2396
Query 2379 AAAGAGGGTGATAACT 2394
|||||||| |||||||
Sbjct 2397 AAAGAGGGAGATAACT 2412
> AT5G14040.1 | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4530643-4533070
REVERSE LENGTH=1649
Length=1649
Score = 134 bits (72), Expect = 6e-30
Identities = 103/117 (88%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 2395 ACACAGCCTGGATTTGCCAGGGGAATGTCTGATGGATTTCCCAAGTTTATCAAGTCTGAA 2454
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 718 ACACAGCCTGGATTTGCTAGGGGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAA 777
Query 2455 GG-T-CTTGGAGGTTTGTACAAGGGAATTGGTCCACTTTGGGG-CGTCAGATTCCTT 2508
|| | | ||||| ||||| ||||| ||| |||||| ||||| |||||||||||||
Sbjct 778 GGATAC--GGAGGCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140868775944
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5