BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg343104

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14900.1 | Symbols:  | Gibberellin-regulated family protein ...   488    1e-137


> AT2G14900.1 | Symbols:  | Gibberellin-regulated family protein 
| chr2:6404175-6405330 FORWARD LENGTH=649
Length=649

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 307/328 (94%), Gaps = 2/328 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAATAATAATCTCCATCTT-GTTTCTAGCCTCAGTTCTTCTAATCACTTCATCTCT  59
            |||||||||||| |||||||||| || | |||||||  |||||||||||| |||||||||
Sbjct  36   ATGAAAATAATAGTCTCCATCTTAGTGT-TAGCCTCTCTTCTTCTAATCAGTTCATCTCT  94

Query  60   TGCTTCCGCTACTGTCTCAGATGCTATTGGTAGTGGCGCGGTAGCTCCGGCGCCGGAGAT  119
            |||||| |||||| | ||||||||| ||||||||||||||||||||||||| ||| ||| 
Sbjct  95   TGCTTCGGCTACTATATCAGATGCTTTTGGTAGTGGCGCGGTAGCTCCGGCACCGCAGAG  154

Query  120  CAAATATGGACCGGCGTTAGAGAAATGGTGTGGACAGAAGTGTGAAGGGAGATGCAAAGC  179
            |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  155  CAAAGATGGACCGGCGTTAGAGAAATGGTGTGGACAGAAATGTGAAGGGAGATGCAAAGA  214

Query  180  AGCGGGGATGAAAGATCGGTGTTTGAAGTATTGTGTGATATGTTGCAAAGACTGTCAGTG  239
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  215  AGCGGGGATGAAAGATCGGTGTTTGAAGTATTGTGGGATATGTTGCAAAGACTGTCAGTG  274

Query  240  TGTTCCTTCAGGCACTTATGGGAACAAGCATGAATGTGCTTGCTACCGTGACAAGCTCAG  299
            |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  275  TGTTCCTTCAGGCACTTATGGGAATAAGCATGAATGTGCTTGCTATCGTGACAAGCTCAG  334

Query  300  TAGCAAAGGCACTCCCAAATGTCCTTGA  327
            ||||||||||||||| ||||||||||||
Sbjct  335  TAGCAAAGGCACTCCTAAATGTCCTTGA  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5