BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343130
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15400.1 | Symbols: RBP36B, NRPE3B | DNA-directed RNA polyme... 1424 0.0
AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |... 1380 0.0
> AT2G15400.1 | Symbols: RBP36B, NRPE3B | DNA-directed RNA polymerase
family protein | chr2:6712936-6714586 FORWARD LENGTH=1246
Length=1246
Score = 1424 bits (771), Expect = 0.0
Identities = 898/961 (93%), Gaps = 2/961 (0%)
Strand=Plus/Plus
Query 1 ATGGACGGTACCACTTACCAAAGATTCCCAAAGATCAATATCCGTGAGCTTAAAGATGAC 60
||||||||| ||| |||||||||||||||| | | || |||||||||||||||||||||
Sbjct 87 ATGGACGGTGTCACCTACCAAAGATTCCCAACGGTGAAGATCCGTGAGCTTAAAGATGAC 146
Query 61 TACGCCAAGTTCGAGCTTCGCGAAACCGACGTTTCAATGGCCAACGCTCTCCGTCGCGTA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 147 TACGCCAAGTTCGAGCTTCGTGAAACCGACGTTTCAATGGCCAACGCTCTCCGTCGCGTA 206
Query 121 ATGATCTCCGAAGTCCCCACCATCGCAATAGATCTCGTCAACATCGAGGTTAATTCCTCT 180
||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 207 ATGATCTCCGAAGTCCCCACCATGGCAATCCATCTCGTCAAAATCGAGGTTAATTCCTCT 266
Query 181 GTTCTCAACGACGAGTTCATTGCTCAACGACTTGGTCTCATCCCTCTCACTAGCGAGCGT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 267 GTTCTCAACGACGAGTTCATTGCTCAACGACTTAGTCTCATCCCTCTCACTAGCGAGCGT 326
Query 241 GCTATGAGCATGCGGTTCTGTCAAGATTGTGATGCTTGTGATGGAGAAGGACAATGCGAG 300
|||||||||||||||||||||||||||||||| | |||| ||||||| | ||| ||||||
Sbjct 327 GCTATGAGCATGCGGTTCTGTCAAGATTGTGAAGATTGTAATGGAGATGAACATTGCGAG 386
Query 301 TTTTGCTCTGTTGAGTTTCGGCTTAGTGCTAAGTGTGTTACTGACCAAACCCTAGATGTT 360
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 387 TTCTGCTCTGTTGAGTTTCCCCTTAGTGCTAAGTGTGTTACTGACCAAACCCTAGATGTT 446
Query 361 ACTAGTAGAGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTATTGAC 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 447 ACTAGTAGGGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTAGTAAC 506
Query 421 TCGTCTGCTTCTGATTCAAGCGAGCAAAAGGGAATTACCATTGTGAAACTGCGCAGGGGA 480
|| ||| ||||||||||||||||||| |||||||||| ||||| |||||| |||||||||
Sbjct 507 TCATCTACTTCTGATTCAAGCGAGCACAAGGGAATTATCATTGCGAAACTACGCAGGGGA 566
Query 481 CAAGAGTTGAAGCTTAAGGCGAT-AGCGAGGAAAGGAATTGGGAAAGATCATGCAAAATG 539
||||||||||||||||| || || ||| |||||||||||||||||||||||||| |||||
Sbjct 567 CAAGAGTTGAAGCTTAAAGC-ATTAGCTAGGAAAGGAATTGGGAAAGATCATGCGAAATG 625
Query 540 GTCTCCTGCAGCTACTGTTACGTTTATGTATGAGCCTGACATTATTATCAATGAAGACTT 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 626 GTCTCCTGCAGCTACTGTTACGTATATGTATGAGCCTGACATTATTATCAATGAAGAGAT 685
Query 600 GATGGACACTTTGACAGACGAGGAGAAAATAGACTTGATTGAGAGCAGTCCAACCAAAGT 659
|||| ||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 686 GATGAACACTTTGACAGATGAGGAAAAAATTGACTTGATTGAGAGCAGTCCTACCAAAGT 745
Query 660 TTTTGGCATTGATCCAGTCACCAGACAGGTTGTGGTCGTTGATCCTGAAGCATACACTTA 719
||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 746 GTTTGGCATTGACCCAGTCACCGGACAGGTTGTGGTGGTTGATCCTGAAGCATACACTTA 805
Query 720 CGATGAAGAAGTGATCAAGAAAGCAGAAGCCATGGGAAAACCAGGACTCATTGAGATCTA 779
|||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||| |
Sbjct 806 CGATGAAGAAGTGATCAAGAAAGCTGAAGCAATGGGGAAACCGGGACTCATTGAGATCCA 865
Query 780 TCCGAAAGATGATAGTTTTGTATTCACTGTTGAGTCCACAGGTGCACTGAAGGCTTCCCA 839
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 866 TCCGAAACATGATAGTTTTGTATTCACTGTTGAGTCCACAGGTGCATTGAAGGCTTCTCA 925
Query 840 GCTGGTACTAAATGCCATAGACATCCTGAAGCAGAAGCTTGATGCAATCTGTCTCTCAGA 899
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct 926 GCTGGTACTAAATGCCATTGATATCCTGAAGCAGAAGCTTGATGCAATCCGTCTCTCAGA 985
Query 900 TGACACTGTAGAAGCTGATGATCAGTTTGGTGAACTCAGTGCCCATATGCGTGGAGGATG 959
| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 986 TAACACTGTAGAAGCCGATGATCAGTTTGGTGAACTCGGTGCCCATATGCGTGAAGGATG 1045
Query 960 A 960
|
Sbjct 1046 A 1046
> AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A
| DNA-directed RNA polymerase family protein | chr2:6733566-6735675
FORWARD LENGTH=1248
Length=1248
Score = 1380 bits (747), Expect = 0.0
Identities = 898/969 (93%), Gaps = 18/969 (2%)
Strand=Plus/Plus
Query 1 ATGGACGGTACCACTTACCAAAGATTCCCAAAGATCAATATCCGTGAGCTTAAAGATGAC 60
||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 96 ATGGACGGTGCCACATACCAAAGATTCCCAAAGATCAAGATCCGTGAGCTTAAAGATGAT 155
Query 61 TACGCCAAGTTCGAGCTTCGCGAAACCGACGTTTCAATGGCCAACGCTCTCCGTCGCGTA 120
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 156 TACGCCAAGTTCGAGCTTCGTGAAACCGACGTTTCTATGGCCAACGCTCTCCGTCGCGTA 215
Query 121 ATGATCTCCGAAGTCCCCACCATCGCAATAGATCTCGTC-AACATCGAGGTTAATTCCTC 179
||||||||||||||||| ||| ||||||||||||| ||| || |||||||||||||| ||
Sbjct 216 ATGATCTCCGAAGTCCCTACCGTCGCAATAGATCTAGTCGAA-ATCGAGGTTAATTCATC 274
Query 180 TGTTCTCAACGACGAGTTCATTGCTCAACGACTT-GGTCTCATCCCTCTCACTAGCGAGC 238
||| ||||||||||||||||||||||| ||| || |||||||| |||||||||||||| |
Sbjct 275 TGTACTCAACGACGAGTTCATTGCTCATCGA-TTAGGTCTCATTCCTCTCACTAGCGAAC 333
Query 239 GTGCTATGAGCATGCGGTTCTGTCAAGATTGTGATGCTTGTGATGGAGAAGGACAATGCG 298
|||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||
Sbjct 334 GTGCTATGAGCATGCGTTTCTCTCGAGATTGTGATGCTTGTGATGGAGATGGACAATGCG 393
Query 299 AGTTTTGCTCTGTTGAGTTTCGGCTTAGTGCTAAGTGTGTTACTGACCAAACCCTAGATG 358
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 394 AGTTTTGCTCTGTTGAGTTTCGGCTTAGTTCTAAGTGTGTTACTGATCAAACCCTAGATG 453
Query 359 TTACTAGTAGAGATCTCTACAGTGCTGATCCTACTGTTACTCCTGTTGATTTCACTATTG 418
|||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 454 TTACTAGTAGGGATTTGTACAGTGCTGATCCTACTGTTACTCCTGTGGATTTCACTATTG 513
Query 419 ACTCGTCTGCT-TCTGATTCAAGCGAGCAAAAGGGAATTACCATTGTGAAACTGCG-CAG 476
||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||| | |
Sbjct 514 ACTCGTCTG-TATCTGATTCAAGCGAGCACAAGGGAATTATCATTGTGAAACTGCGTC-G 571
Query 477 GGGACAAGAGTTGAAGCTTAAG-GCGATAGCGAGGAAAGGAATTGGGAAAGATCATGCAA 535
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 572 GGGACAAGAGTTGAAGCTT-AGAGCGATAGCGAGGAAAGGGATTGGGAAAGATCATGCGA 630
Query 536 AATGGTCTCCTGCAGCTACTGTTACGTTTATGTATGAGCCTGACATTATTATCAATGAAG 595
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 631 AATGGTCTCCTGCAGCTACTGTTACGTTTATGTATGAGCCTGACATAATTATTAATGAAG 690
Query 596 ACT-TGATGGACACTTTGACAGACGAGGAGAAA-ATAGACTTGATTGAGAGCAGTCCAAC 653
| | ||||||| |||||| |||||||||| ||| || |||||||||||||||||||| ||
Sbjct 691 A-TATGATGGATACTTTGTCAGACGAGGA-AAAGATCGACTTGATTGAGAGCAGTCCTAC 748
Query 654 CAAAGTTTTTGGCATTGATCCAGTCACCAGACAGGTTGTGGTCGTTGATCCTGAAGCATA 713
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 749 CAAAGTGTTTGGCATGGATCCAGTCACCAGACAGGTTGTAGTGGTTGATCCTGAAGCATA 808
Query 714 CACTTACGATGAAGAAGTGATCAAGAAAGCAGAAGCCATGGGAAAACCAGGACTCATTGA 773
|||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 809 CACTTACGATGAAGAAGTGATCAAGAAAGCTGAAGCAATGGGGAAACCGGGACTCATTGA 868
Query 774 GATCTA-TCCGAAAGATGATAGTTTTGTATTCACTGTTGAGTCCACAGGTGCACTGAAGG 832
|||| | |||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 869 GATC-AGTCCGAAAGATGACAGTTTTATATTCACTGTTGAGTCCACAGGTGCAGTGAAGG 927
Query 833 CTTCCCAGCTGGTACTAAATGCCATAGA-CATCCTGAAGCAGAAGCTTGATGCAATCTGT 891
||||||| ||||||||||||||||| || | || |||||||||||||||||||| || ||
Sbjct 928 CTTCCCAACTGGTACTAAATGCCATTGATCTTC-TGAAGCAGAAGCTTGATGCAGTCCGT 986
Query 892 CTCTCAGATGACACTGTAGAAGCTGATGATCAGTTTGGTGAACTCAGTGCCCATATGCGT 951
|||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 987 CTCTCAGATGACACCGTAGAAGCGGATGATCAGTTTGGTGAACTCGGTGCCCATATGCGT 1046
Query 952 GGAGGATGA 960
|||||||||
Sbjct 1047 GGAGGATGA 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5