BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343146
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15610.1 | Symbols: | Protein of unknown function (DUF1685)... 508 1e-143
AT2G15590.2 | Symbols: | Protein of unknown function (DUF1685)... 326 1e-88
> AT2G15610.1 | Symbols: | Protein of unknown function (DUF1685)
| chr2:6806033-6806764 FORWARD LENGTH=540
Length=540
Score = 508 bits (275), Expect = 1e-143
Identities = 335/364 (92%), Gaps = 3/364 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAACCACAACAAGCCACAGCCGCCAAAACCTCTGATGAAGCAACAGTCTTTGCCA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAACCAAAACAAGCCACAGCCGCCAAAACCTCTGATGAAGCAACAGTCTTTGCCA 60
Query 61 CTAGACGTAAACCGCGAAGAGGCTTGGCTGCGGATGAAGAAGAGGCATCCATCAGATCGT 120
| |||| ||||||||||||||||||||||||| |||||||| | ||||||||| | |||
Sbjct 61 CCAGACATAAACCGCGAAGAGGCTTGGCTGCGAATGAAGAAAAAGCATCCATCGGCCCGT 120
Query 121 CTTCGTCGCAGCAAGAGCTGCTTCACAAGCGACGATATCGAGGAGCTCAAAGGCTGCTTC 180
|||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||
Sbjct 121 CTTCATCGCAGCAAGAGCTGCGTCACAAACGACGATATCGAGGAGCTCAGAGGCTGCTTC 180
Query 181 GACCTAGGGTTTGGGTTTGAGCCAGATTCTCCTGACTTTAATCCAAGACTCTCCAAAACA 240
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 181 GACCTAGGGTTTGGGTTTGAGCCAGATTCTCTTGACTTTAATCCAAGTCTCTCCAAAACA 240
Query 241 ATCCCAGCTTTGGATTTATACAGCACCATTCAAAGACAGTACAGCAACTATTTGCCCCGG 300
||||||||||||||||| |||||| ||||||| ||||||||||||||| ||||| | |||
Sbjct 241 ATCCCAGCTTTGGATTTGTACAGCGCCATTCACAGACAGTACAGCAACCATTTGTCTCGG 300
Query 301 ACCTCATCGTCTGCGTCGGAAAGTGACGTCAGCAACTCTAGCACCACGACTATCGTCAAC 360
|| | |||||| |||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 301 ACATGGTCGTCTACGTCGGAACGTGACGTCA--A-CTCTAGCACCACGACTATCGTCAAC 357
Query 361 AAAG 364
||||
Sbjct 358 AAAG 361
> AT2G15590.2 | Symbols: | Protein of unknown function (DUF1685)
| chr2:6801943-6802618 FORWARD LENGTH=587
Length=587
Score = 326 bits (176), Expect = 1e-88
Identities = 375/468 (80%), Gaps = 26/468 (6%)
Strand=Plus/Plus
Query 1 ATGTCGAACCACAACAAGCCACAGCCGCCAAAACCTCTGATGAAGCAACAGTCTTTGCCA 60
|||||||||||| | ||||||||| |||| |||||||||||||||| | || | | ||
Sbjct 8 ATGTCGAACCAC-GC--GCCACAGCCTCCAAGACCTCTGATGAAGCAATACTCGTGGTCA 64
Query 61 CTAGACGTAAACCGCGAAGAGGCTTGGCTGCGGATGAAGAAGAGGCATCCATCAG-ATCG 119
| ||| | | |||||||||||||||||||| | ||| |||| | ||| | | |||
Sbjct 65 CCGGACATGAGTCGCGAAGAGGCTTGGCTGCGTAAGAAAAAGAAACGCCCA-CTGGATC- 122
Query 120 TC-TTCGTCGCAGCAAGAGCTGCTTCAC-AAGCGACGATATCGAGGAGCTCAAAGGCTGC 177
|| ||| |||||||||||| || | ||| || || |||||||||||||| ||||||||
Sbjct 123 TCCTTCCTCGCAGCAAGAG-TG-T-CACGAAT-GATGATATCGAGGAGCTTAAAGGCTGT 178
Query 178 TTCGACCTAGGGTTTGGGTTTGAGCCAGATTCTCCTGACTTT-AATCCAAGACTCTCCAA 236
||||| || || ||||||||||| |||| |||||||| ||| |||||||| |||||| |
Sbjct 179 TTCGAGCTTGGTTTTGGGTTTGAAACAGAATCTCCTGA-TTTGAATCCAAGGCTCTCCCA 237
Query 237 AACAATCCCAGCT-TTGGATTTATACAGCACCATTCAAAGACAGTACAGCAACTATTTGC 295
|||||||| ||| ||| || | ||| || | |||| ||||| ||||||||| |||||
Sbjct 238 TACAATCCCCGCTCTTG-ATCTGTACTGCGCGGTTCATAGACAATACAGCAACCATTTGT 296
Query 296 CCCGGACCTCATCGT-CTGCGTCGGAA-AGTGACGTCAGCAACTCTAGCA-C--CACGAC 350
| ||||| || || | | |||||||| | ||| ||||||||||| | || | ||||||
Sbjct 297 CTCGGACGTCTTCATTC-GCGTCGGATCA-TGAAGTCAGCAACTCCAACAACATCACGAC 354
Query 351 TATCGTCAACAAAGATGATGAT-GGAAAGACGATGAAGAAGAAGCTGAAACAATGGGCTA 409
|||||| |||||| ||||||| |||| |||||||||| |||||||||||||||||||||
Sbjct 355 CATCGTCGACAAAGGTGATGATCGGAA-GACGATGAAGCAGAAGCTGAAACAATGGGCTA 413
Query 410 AGGTGGTTGCGTGTTCTGCGAGGCACTCCTCCGGCAAACC-AAATTGA 456
||||||| | || ||| | | ||||||| ||||| ||||| |||||||
Sbjct 414 AGGTGGTAGGGTTTTCGGTGCGGCACTCTTCCGGAAAACCCAAATTGA 461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5