BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343166
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25550.1 | Symbols: | myb-like transcription factor family ... 300 9e-81
AT5G56000.1 | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN ... 193 2e-48
AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 |... 187 7e-47
AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5... 182 3e-45
AT1G68670.1 | Symbols: | myb-like transcription factor family ... 106 2e-22
AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor fam... 99.0 4e-20
> AT1G25550.1 | Symbols: | myb-like transcription factor family
protein | chr1:8976434-8978093 FORWARD LENGTH=1396
Length=1396
Score = 300 bits (162), Expect = 9e-81
Identities = 275/325 (85%), Gaps = 26/325 (8%)
Strand=Plus/Plus
Query 132 TGTTGCTACACCTAAACAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTAA 191
||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 909 TGTTGCTACGCCTAAGCAGATTAGAGATCT--T--A--TGAAGGTCGATGGTTTAACTAA 962
Query 192 TGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGCACACAAGAAGACCAGCTACTCC 251
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 963 TGACGAAGTTAAAAGTCATTTACAGAAATATAGATTGCATACAAGAAGACCAGCTACTCC 1022
Query 252 GGTAGTAACAAACGGTGGAGAAAATCCACAACAACTACAATTCATGGTGGTGGAAGGAAT 311
|||||||| | |||||| |||||||||||||||| || || |||||| ||||||| ||
Sbjct 1023 GGTAGTAAGGACCGGTGGTGAAAATCCACAACAACGGCAGTTTATGGTGATGGAAGGCAT 1082
Query 312 TTGGGTGC-TGTCGCACGATACAACGAATAATAGAGTTTACGCTC-TGGTGGCG------ 363
|||||| | | || ||||||||||| ||||||||||||||||||| || |||||
Sbjct 1083 TTGGGTACCT-TCACACGATACAACTAATAATAGAGTTTACGCTCCTG-TGGCGACACAA 1140
Query 364 --GTT-CAATCTTCACCGTCGGGAGAGAGAAGTAGA-CGGCGCTGCAAATCGCC-GACAA 418
| ||||||||| |||||||||||||||| | | ||| | |||||||| || | |||
Sbjct 1141 CCGCCGCAATCTTCAACGTCGGGAGAGAGAAGCA-ATCGGGGTTGCAAATCTCCCG-CAA 1198
Query 419 CATCTTCTAC-AC-ACAC-CACACC 440
|||||||||| || |||| ||||||
Sbjct 1199 CATCTTCTACTACTACACACACACC 1223
> AT5G56000.1 | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN
81.4 | chr5:22677451-22680152 REVERSE LENGTH=2336
Length=2336
Score = 193 bits (104), Expect = 2e-48
Identities = 122/131 (93%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 3 GATTAGGTTTGAGTCGTTGACGGACAAGAGCAAGCTCGATGGTCAGCCTGAGCTATTCCT 62
||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 220 GATTAGGTTCGAGTCCTTGACGGATAAGAGCAAGCTCGATGGTCAGCCTGAGCTTTTCAT 279
Query 63 TCATATCATTCCCGACAAGACTAACAACACCTTGAACATTATCGATAGTGGGATTGGGAT 122
|||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 280 TCATATCATTCCGGACAAGACTAACAACACCTTGACCATTATCGATAGTGGTATTGGGAT 339
Query 123 GACTAAGGCTG 133
||| |||||||
Sbjct 340 GACCAAGGCTG 350
> AT5G56010.1 | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3
| heat shock protein 81-3 | chr5:22681305-22684129 FORWARD
LENGTH=2423
Length=2423
Score = 187 bits (101), Expect = 7e-47
Identities = 122/132 (92%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 3 GATTAGGTTTGAGTCGTTGACGGACAAGAGCAAGCTCGATGGTCAGCCTGAGCTATTCCT 62
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||| |
Sbjct 240 GATTAGGTTTGAGTCCTTGACAGACAAGAGCAAGCTCGATGGTCAGCCAGAGCTCTTCAT 299
Query 63 TCATATCATTCCCGACAAGACTAACAACACCTTGAAC-ATTATCGATAGTGGGATTGGGA 121
||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 300 TCACATCATTCCCGACAAGACTAACAACACCTTGA-CGATTATCGATAGTGGTATTGGGA 358
Query 122 TGACTAAGGCTG 133
|||| |||||||
Sbjct 359 TGACCAAGGCTG 370
> AT5G56030.2 | Symbols: HSP81-2 | heat shock protein 81-2 | chr5:22686832-22689471
FORWARD LENGTH=2316
Length=2316
Score = 182 bits (98), Expect = 3e-45
Identities = 120/131 (92%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 3 GATTAGGTTTGAGTCGTTGACGGACAAGAGCAAGCTCGATGGTCAGCCTGAGCTATTCCT 62
|||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 313 GATTAGATTCGAGTCCTTGACGGACAAGAGCAAGCTCGATGGTCAGCCTGAGCTCTTCAT 372
Query 63 TCATATCATTCCCGACAAGACTAACAACACCTTGAACATTATCGATAGTGGGATTGGGAT 122
||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||
Sbjct 373 TCACATCATTCCCGACAAGACTAACAACACCTTGACCATTATTGATAGTGGTATTGGCAT 432
Query 123 GACTAAGGCTG 133
||| |||||||
Sbjct 433 GACCAAGGCTG 443
> AT1G68670.1 | Symbols: | myb-like transcription factor family
protein | chr1:25782029-25784076 FORWARD LENGTH=1583
Length=1583
Score = 106 bits (57), Expect = 2e-22
Identities = 98/116 (84%), Gaps = 10/116 (9%)
Strand=Plus/Plus
Query 132 TGTTGCTACACCTAAA-CAGATTAGAGATCTCATGAAGGTGAAGGTCGATGGTTTAACTA 190
|||||||||||| ||| || || || |||| ||||||||| | ||||| ||||| |
Sbjct 1032 TGTTGCTACACC-AAAGCAAATCAGGGATCACATGAAGGT-----T-GATGGATTAACAA 1084
Query 191 ATGACGAAGTTAAAAGCCATTTACAGAAATATAGA-TTGCACACAAGAAGACCAGC 245
| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 1085 ACGACGAAGTTAAAAGCCATTTACAGAAATATAGACTT-CACACAAGAAGGCCAGC 1139
> AT1G13300.1 | Symbols: HRS1 | myb-like transcription factor family
protein | chr1:4556892-4558708 FORWARD LENGTH=1237
Length=1237
Score = 99.0 bits (53), Expect = 4e-20
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 170 TGAAGGTCGATGGTTTAACTAATGACGAAGTTAAAAGCCATTTACAGAAATATAGATTGC 229
||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 732 TGAAGGTTGATGGGTTAACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGACTGC 791
Query 230 ACACAAGAAGACCA 243
| |||||||| |||
Sbjct 792 ATACAAGAAGGCCA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22705834444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5