BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg343169 Length=2526 Score E Sequences producing significant alignments: (Bits) Value AT2G15820.1 | Symbols: OTP51 | endonucleases | chr2:6888540-689... 3655 0.0 > AT2G15820.1 | Symbols: OTP51 | endonucleases | chr2:6888540-6891360 REVERSE LENGTH=2744 Length=2744 Score = 3655 bits (1979), Expect = 0.0 Identities = 2294/2446 (94%), Gaps = 21/2446 (1%) Strand=Plus/Plus Query 1 ATGATTGTTACCGGAGCTTGCGACTTCTCTTCATCACTCTCCGTCGCCACTTCCTCCTCC 60 |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 31 ATGATTGTTACCGGAGCTTGCGACTTCTCTTCATCATTCTCCCTCGCCTCTTCCTCCTCC 90 Query 61 TCCGCCGTCTCCGTCACAACCTTCAACATTTCctctctctcctctctctcctctAACCCT 120 ||| |||||||||||||||||||||||| | | || || |||| | ||||||||||| Sbjct 91 TCCACCGTCTCCGTCACAACCTTCAACA--T--T-TC-CT-CTCT-T-TCCTCTAACCC- 140 Query 121 AACATCATCATCAATTCCAGCTCAACTCTCTTCCGTTCCCTTTCCTTCTCCCTTATCCGC 180 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 --CAACATCATCAATTCCAGCTCAACTCTCTTCCGTTCCCTTTCCTTCTCCCTTATCCGC 198 Query 181 CATCGCAGCAGCTACTCTCGTCGCTCTCTCCGCCGTCTCTCTATCCACACAGTTCATGGA 240 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 199 CACCGCAGCAGCTACTCACGTCGCTCTCTCCGCCGTCTCTCTATCCACACAGTTCATGGA 258 Query 241 AACAAAACCCAATTCTTCTCTCACTCTTCTACGCGAACTCCACCACTTTTCACGGCTAAT 300 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 259 AACAAAACCCAATTCTTCTCTCACTCGTCTACACGAACTCCACCACTTTTCACGGCTAAT 318 Query 301 TACGCTGCTCAACGATGCGGGACTTTCGTCGAACACCTTACAGGCATTACAGAATCGAAA 360 | | | || |||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 319 TCCACAGCCCAACGAAGCGGGACTTTCGTCGAACACCTTACAGGCATTACAGAATCGGAA 378 Query 361 GAAGGAAGCAGCGAAGCCAACGATTTCGGTGATGTAGAGTCTGCTAGGAACGATATAAGG 420 ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 379 GAAGGAATCAGCGAAGCCAACGGTTTCGGTGATGTAGAGTCTGCTAGGAACGACATAAGA 438 Query 421 AATGTTACGACTCGTAGAGTAGAGACGGAGTTTGAAGTTAGAGAATTGGAAGAGTTGCCG 480 || || ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 439 AACGTCGCGACTCGTAGAATAGAGACGGAGTTTGAAGTTAGAGAATTGGAAGAGTTGCCT 498 Query 481 GAGGAATGGCGACGGTCGAAGCTAGCGTGGCTGTGTAAAGAAGTTCCGACGCATAAGGCC 540 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct 499 GAGGAATGGCGACGCTCGAAGCTAGCTTGGCTGTGTAAAGAGGTTCCAACGCATAAGGCC 558 Query 541 GTGACGCTTGTGAGGCTATTGAATGCTCAGAAGAAATGGGTTCGTCAAGAAGATGCTACT 600 |||||||||||||| || |||||||||||||||||||||||||||||||| || |||||| Sbjct 559 GTGACGCTTGTGAGACTCTTGAATGCTCAGAAGAAATGGGTTCGTCAAGAGGACGCTACT 618 Query 601 TACATCGCTGTTCATTGTATGCGGATTCGTGAGAACGAAACTGGATTCAGGGTGTATAGA 660 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 619 TACATCTCTGTTCATTGTATGCGAATTCGTGAGAACGAAACTGGATTCAGGGTGTATAGA 678 Query 661 TGGATGACACAGCAGAATTGGTACCGGTTTGATTTCGGGTTAGCGACGAAGCTAGCTGAT 720 ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 679 TGGATGACACAACAGAATTGGTACCGGTTTGATTTCGGGTTAACGACGAAGCTAGCTGAA 738 Query 721 TACTTGGGCAAAGAACGGAAATTTACGAAATGCCGGGAGGTATTTGATGATATTTTGAAT 780 |||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||| Sbjct 739 TACTTGGGGAAAGAACGGAAATTTACGAAATGTCGAGAGGTATTTGATGATGTTTTGAAT 798 Query 781 CAAGGGCGTGTTCCAAGTGAATCTACATTTCATATTCTTGTAGTTGCATATCTAAGTAGC 840 ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 799 CAAGGACGTGTACCAAGTGAATCTACATTTCATATTCTTGTAGTTGCGTATCTAAGTAGC 858 Query 841 TTATCAGTCGAAGGCTGTCTCGAGGAAGCGTGTAGCGTTTACAATAGAATGATTCAACTT 900 |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 859 TTATCAGTAGAAGGTTGTCTCGAGGAAGCGTGTAGTGTTTACAATAGAATGATTCAACTT 918 Query 901 GGAGGTTACAAGCCGCGTCTTAGTCTGCATAATTCTTTATTTAGAGCTTTGGTAAGCAAA 960 ||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct 919 GGAGGTTACAAACCGCGTCTTAGTCTGCATAACTCTTTGTTTAGAGCTTTGGTTAGTAAA 978 Query 961 CGAGGAGGGATTTTGAATGATCAGCTTAAGCAAGCCGAGTTTATCTTTCACAATGTTGTG 1020 | |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 979 CAAGGAGGGATTCTGAATGATCAGCTTAAGCAAGCAGAGTTTATCTTTCACAATGTTGTG 1038 Query 1021 ACAACCGGGCTTGAGGTTCAGAAGGATATTTATAGCGGATTAATCTGGCTGCATAGTTGC 1080 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1039 ACAACCGGGCTTGAGGTTCAGAAGGATATTTATAGTGGATTGATCTGGCTGCATAGTTGT 1098 Query 1081 CAAGAAGAAGTTGACAAAGACAGGATTAACTCTCTAAGAGAAGAGATGAAGAAGGCGGGC 1140 ||||| |||||||| | || ||||| ||||||||||||||||||||||||||||| || Sbjct 1099 CAAGATGAAGTTGATATAGGTAGGATAAACTCTCTAAGAGAAGAGATGAAGAAGGCCGGT 1158 Query 1141 TTTCAGGAGAGTAAAGAAGTTGTGGTGTCGTTACTGAGAGCATATGCAAAGGAGGGAGGT 1200 |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 1159 TTTCAGGAGAGTAAAGAAGTTGTGGTATCGTTACTTAGAGCTTATGCAAAGGAGGGAGGT 1218 Query 1201 GTGGAAGAAGTTGAGAGGACGTGGCTTGAATTGCTTGATTTAGATTGTGGTATACCTTCT 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1219 GTGGAAGAAGTTGAGAGGACGTGGCTTGAATTGCTTGATTTAGATTGTGGTATACCTTCT 1278 Query 1261 CAGGCGTTTGTGTACAAAATGGAAGCTTATTCGAAAGTCGGTGATTTTGCGAAAGCTTTG 1320 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| || Sbjct 1279 CAGGCGTTTGTGTACAAAATAGAAGCTTATTCGAAAGTCGGCGATTTTGCGAAAGCTATG 1338 Query 1321 GAGATATTCAGGGAGATGGAGAAGCATTTAGGTGGTGCAACTGTGTCTGGATACCACAAA 1380 |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| ||| Sbjct 1339 GAGATATTTAGGGAGATGGAGAAGCATATAGGTGGTGCAACTATGTCTGGATACCATAAA 1398 Query 1381 ATCATTGAGGTTCTATGTAAAGTCCAGCAAGTGGAATTTGCGGAATCTCTCTTGAAGGAG 1440 |||||||||||||||||||||||||| ||||||||| ||| |||| ||||| |||||||| Sbjct 1399 ATCATTGAGGTTCTATGTAAAGTCCAACAAGTGGAACTTGTGGAAACTCTCATGAAGGAG 1458 Query 1441 TTTGAAGAAAGTGGGAAGAAGCCGCTTCTACCATCATACATCGAAATAGCCAAAATGTAC 1500 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1459 TTTGAAGAAAGCGGGAAGAAGCCGCTTCTACCATCATTCATCGAAATAGCCAAAATGTAC 1518 Query 1501 TTCGATTTGGGTTTACATGAGAAATTGGAGATGGCTTTTGTTGAGTGCTTGGAGAAATGC 1560 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1519 TTCGATTTGGGTTTACATGAGAAATTGGAGATGGCTTTTGTTCAGTGCTTGGAGAAATGC 1578 Query 1561 CAACCTAGCCAGACTATATATAACATATATCTGGATTCATTGGTTAAAATCAG-CAACCT 1619 |||||||||||| ||||||||||||||||| ||||||||||| |||||| || |||||| Sbjct 1579 CAACCTAGCCAGCCTATATATAACATATATTTGGATTCATTGACTAAAAT-AGGCAACCT 1637 Query 1620 TGAGAAAGCAGGGGATGTCTTCAATAAAATGAAAAACAACGGGACAATCAATGTGAATGC 1679 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1638 TGAGAAAGCAGGGGATGTCTTCAATGAAATGAAAAACAACGGGACAATCAATGTGAGTGC 1697 Query 1680 TAGATCGTGCAACAACCTTTTAAAAGGATACCTAGATTCTGGAAAACAAGTTCAGGCAGA 1739 |||||| ||||||| ||||||||| ||||||||||||| |||||||||||| |||||||| Sbjct 1698 TAGATCCTGCAACAGCCTTTTAAAGGGATACCTAGATTGTGGAAAACAAGTGCAGGCAGA 1757 Query 1740 GAGAATATATGATCTGATGAGATTGAAGAAATACGAAATCGAACCACCGCTTATGGAAAA 1799 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1758 GAGAATATATGATCTGATGAGAATGAAGAAATACGAAATCGAACCACCGCTTATGGAAAA 1817 Query 1800 GCTTGATTACATCCTGAGCTTGAAGAAAAAAGAGCTGAAGAA-A--CCGTTAAGCATGAA 1856 |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||||| Sbjct 1818 GCTTGATTACATCCTGAGCTTGAAGAAAAAAGAGGTGAAGAAGAGACCGTTTAGCATGAA 1877 Query 1857 GCTAAGCAAAGACCAGCGTGAGGTATTGGTAGGTTTGCTGTTAGGTGGCTTGCAAATCGA 1916 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1878 GCTAAGCAAAGACCAGCGTGAGGTATTGGTAGGTTTGTTGTTAGGTGGCTTGCAAATCGA 1937 Query 1917 ATCTGACAAAGAGAAGAAGAGCCACATGATCAAATTTGAATTCAGAGAGAATTCTCAGAC 1976 ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 1938 ATCAGACAAAGAGAAGAAGAGCCACATGATCAAATTTGAATTTAGAGAAAATTCTCA-AG 1996 Query 1977 C-CATCTGATTCTTAAACAACACATACATGACCAGTTCCGCGAGTGGTTTCATCCTTTAA 2035 | |||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||| | Sbjct 1997 CTCATCTGGTTCTTAAACAAAACATACATGACCAGTTCCGTGAGTGGTTGCATCCTTTGA 2056 Query 2036 GCGATTTTCAGGAGGATATAATACCGTTCGAATTCTACTCCGTTCCCCATTCATACTTCG 2095 || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2057 GCAATTTTCAGGAGGATATTATACCGTTCGAATTCTACTCCGTTCCCCATTCATACTTCG 2116 Query 2096 GGTTTTACGCTGAACATTTCTGGCCCAAGGGTCAACCAGAGATTCCAAACCTGATCCATC 2155 |||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| |||| Sbjct 2117 GGTTTTACGCTGAACATTACTGGCCAAAGGGTCAGCCAGAGATTCCAAAACTGATTCATC 2176 Query 2156 GGTGGCTCTCACCACACTCACTCGCATATTGGTACATGTACAGCGGCTTTAAAACATCAT 2215 ||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2177 GGTGGCTATCGCCACACTCACTCGCGTATTGGTACATGTACAGCGGCGTTAAAACATCAT 2236 Query 2216 CAGGAGACATTATCTTGAGATTGAAGGGAAGTCTAGAAGGTGTTGAGAAGGTAGTAAAGG 2275 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 2237 CAGGAGACATTATCTTGAGATTGAAGGGAAGTCTCGAAGGTGTTGAGAAAGTAGTAAAGG 2296 Query 2276 CTCTT-AGAGCCAAATCAATGGAATGTCGAGTTAAGAAGAAAGGAAAAGTCTTCTGGATC 2334 ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2297 CTCTTCA-AGCCAAATCTATGGAATGTCGAGTTAAGAAGAAAGGAAAAGTCTTCTGGATT 2355 Query 2335 GGACTTCAGGGAACAAACTCAGCTTTGTTCTGGAACCTAATAGAGCCTTACGTGTTAGAG 2394 ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| Sbjct 2356 GGACTTCAGGGAACAAACTCAGCTTTGTTCTGGAAACTAATAGAGCCTCATGTGTTAGAG 2415 Query 2395 GACTTGAAAGATCATTTGAAACCTCCTTCTGAATCAATGGGCAATG 2440 |||||||||| |||||||||||| ||||||||||| ||| ||||| Sbjct 2416 AACTTGAAAGAGCATTTGAAACCTGCTTCTGAATCACTGGACAATG 2461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 125367190557 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5