BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343169
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15820.1 | Symbols: OTP51 | endonucleases | chr2:6888540-689... 3655 0.0
> AT2G15820.1 | Symbols: OTP51 | endonucleases | chr2:6888540-6891360
REVERSE LENGTH=2744
Length=2744
Score = 3655 bits (1979), Expect = 0.0
Identities = 2294/2446 (94%), Gaps = 21/2446 (1%)
Strand=Plus/Plus
Query 1 ATGATTGTTACCGGAGCTTGCGACTTCTCTTCATCACTCTCCGTCGCCACTTCCTCCTCC 60
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 31 ATGATTGTTACCGGAGCTTGCGACTTCTCTTCATCATTCTCCCTCGCCTCTTCCTCCTCC 90
Query 61 TCCGCCGTCTCCGTCACAACCTTCAACATTTCctctctctcctctctctcctctAACCCT 120
||| |||||||||||||||||||||||| | | || || |||| | |||||||||||
Sbjct 91 TCCACCGTCTCCGTCACAACCTTCAACA--T--T-TC-CT-CTCT-T-TCCTCTAACCC- 140
Query 121 AACATCATCATCAATTCCAGCTCAACTCTCTTCCGTTCCCTTTCCTTCTCCCTTATCCGC 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 --CAACATCATCAATTCCAGCTCAACTCTCTTCCGTTCCCTTTCCTTCTCCCTTATCCGC 198
Query 181 CATCGCAGCAGCTACTCTCGTCGCTCTCTCCGCCGTCTCTCTATCCACACAGTTCATGGA 240
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CACCGCAGCAGCTACTCACGTCGCTCTCTCCGCCGTCTCTCTATCCACACAGTTCATGGA 258
Query 241 AACAAAACCCAATTCTTCTCTCACTCTTCTACGCGAACTCCACCACTTTTCACGGCTAAT 300
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 259 AACAAAACCCAATTCTTCTCTCACTCGTCTACACGAACTCCACCACTTTTCACGGCTAAT 318
Query 301 TACGCTGCTCAACGATGCGGGACTTTCGTCGAACACCTTACAGGCATTACAGAATCGAAA 360
| | | || |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 319 TCCACAGCCCAACGAAGCGGGACTTTCGTCGAACACCTTACAGGCATTACAGAATCGGAA 378
Query 361 GAAGGAAGCAGCGAAGCCAACGATTTCGGTGATGTAGAGTCTGCTAGGAACGATATAAGG 420
||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 379 GAAGGAATCAGCGAAGCCAACGGTTTCGGTGATGTAGAGTCTGCTAGGAACGACATAAGA 438
Query 421 AATGTTACGACTCGTAGAGTAGAGACGGAGTTTGAAGTTAGAGAATTGGAAGAGTTGCCG 480
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 439 AACGTCGCGACTCGTAGAATAGAGACGGAGTTTGAAGTTAGAGAATTGGAAGAGTTGCCT 498
Query 481 GAGGAATGGCGACGGTCGAAGCTAGCGTGGCTGTGTAAAGAAGTTCCGACGCATAAGGCC 540
|||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 499 GAGGAATGGCGACGCTCGAAGCTAGCTTGGCTGTGTAAAGAGGTTCCAACGCATAAGGCC 558
Query 541 GTGACGCTTGTGAGGCTATTGAATGCTCAGAAGAAATGGGTTCGTCAAGAAGATGCTACT 600
|||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||
Sbjct 559 GTGACGCTTGTGAGACTCTTGAATGCTCAGAAGAAATGGGTTCGTCAAGAGGACGCTACT 618
Query 601 TACATCGCTGTTCATTGTATGCGGATTCGTGAGAACGAAACTGGATTCAGGGTGTATAGA 660
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 619 TACATCTCTGTTCATTGTATGCGAATTCGTGAGAACGAAACTGGATTCAGGGTGTATAGA 678
Query 661 TGGATGACACAGCAGAATTGGTACCGGTTTGATTTCGGGTTAGCGACGAAGCTAGCTGAT 720
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 679 TGGATGACACAACAGAATTGGTACCGGTTTGATTTCGGGTTAACGACGAAGCTAGCTGAA 738
Query 721 TACTTGGGCAAAGAACGGAAATTTACGAAATGCCGGGAGGTATTTGATGATATTTTGAAT 780
|||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 739 TACTTGGGGAAAGAACGGAAATTTACGAAATGTCGAGAGGTATTTGATGATGTTTTGAAT 798
Query 781 CAAGGGCGTGTTCCAAGTGAATCTACATTTCATATTCTTGTAGTTGCATATCTAAGTAGC 840
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 799 CAAGGACGTGTACCAAGTGAATCTACATTTCATATTCTTGTAGTTGCGTATCTAAGTAGC 858
Query 841 TTATCAGTCGAAGGCTGTCTCGAGGAAGCGTGTAGCGTTTACAATAGAATGATTCAACTT 900
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 859 TTATCAGTAGAAGGTTGTCTCGAGGAAGCGTGTAGTGTTTACAATAGAATGATTCAACTT 918
Query 901 GGAGGTTACAAGCCGCGTCTTAGTCTGCATAATTCTTTATTTAGAGCTTTGGTAAGCAAA 960
||||||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 919 GGAGGTTACAAACCGCGTCTTAGTCTGCATAACTCTTTGTTTAGAGCTTTGGTTAGTAAA 978
Query 961 CGAGGAGGGATTTTGAATGATCAGCTTAAGCAAGCCGAGTTTATCTTTCACAATGTTGTG 1020
| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 979 CAAGGAGGGATTCTGAATGATCAGCTTAAGCAAGCAGAGTTTATCTTTCACAATGTTGTG 1038
Query 1021 ACAACCGGGCTTGAGGTTCAGAAGGATATTTATAGCGGATTAATCTGGCTGCATAGTTGC 1080
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1039 ACAACCGGGCTTGAGGTTCAGAAGGATATTTATAGTGGATTGATCTGGCTGCATAGTTGT 1098
Query 1081 CAAGAAGAAGTTGACAAAGACAGGATTAACTCTCTAAGAGAAGAGATGAAGAAGGCGGGC 1140
||||| |||||||| | || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1099 CAAGATGAAGTTGATATAGGTAGGATAAACTCTCTAAGAGAAGAGATGAAGAAGGCCGGT 1158
Query 1141 TTTCAGGAGAGTAAAGAAGTTGTGGTGTCGTTACTGAGAGCATATGCAAAGGAGGGAGGT 1200
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1159 TTTCAGGAGAGTAAAGAAGTTGTGGTATCGTTACTTAGAGCTTATGCAAAGGAGGGAGGT 1218
Query 1201 GTGGAAGAAGTTGAGAGGACGTGGCTTGAATTGCTTGATTTAGATTGTGGTATACCTTCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GTGGAAGAAGTTGAGAGGACGTGGCTTGAATTGCTTGATTTAGATTGTGGTATACCTTCT 1278
Query 1261 CAGGCGTTTGTGTACAAAATGGAAGCTTATTCGAAAGTCGGTGATTTTGCGAAAGCTTTG 1320
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 1279 CAGGCGTTTGTGTACAAAATAGAAGCTTATTCGAAAGTCGGCGATTTTGCGAAAGCTATG 1338
Query 1321 GAGATATTCAGGGAGATGGAGAAGCATTTAGGTGGTGCAACTGTGTCTGGATACCACAAA 1380
|||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |||
Sbjct 1339 GAGATATTTAGGGAGATGGAGAAGCATATAGGTGGTGCAACTATGTCTGGATACCATAAA 1398
Query 1381 ATCATTGAGGTTCTATGTAAAGTCCAGCAAGTGGAATTTGCGGAATCTCTCTTGAAGGAG 1440
|||||||||||||||||||||||||| ||||||||| ||| |||| ||||| ||||||||
Sbjct 1399 ATCATTGAGGTTCTATGTAAAGTCCAACAAGTGGAACTTGTGGAAACTCTCATGAAGGAG 1458
Query 1441 TTTGAAGAAAGTGGGAAGAAGCCGCTTCTACCATCATACATCGAAATAGCCAAAATGTAC 1500
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1459 TTTGAAGAAAGCGGGAAGAAGCCGCTTCTACCATCATTCATCGAAATAGCCAAAATGTAC 1518
Query 1501 TTCGATTTGGGTTTACATGAGAAATTGGAGATGGCTTTTGTTGAGTGCTTGGAGAAATGC 1560
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1519 TTCGATTTGGGTTTACATGAGAAATTGGAGATGGCTTTTGTTCAGTGCTTGGAGAAATGC 1578
Query 1561 CAACCTAGCCAGACTATATATAACATATATCTGGATTCATTGGTTAAAATCAG-CAACCT 1619
|||||||||||| ||||||||||||||||| ||||||||||| |||||| || ||||||
Sbjct 1579 CAACCTAGCCAGCCTATATATAACATATATTTGGATTCATTGACTAAAAT-AGGCAACCT 1637
Query 1620 TGAGAAAGCAGGGGATGTCTTCAATAAAATGAAAAACAACGGGACAATCAATGTGAATGC 1679
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1638 TGAGAAAGCAGGGGATGTCTTCAATGAAATGAAAAACAACGGGACAATCAATGTGAGTGC 1697
Query 1680 TAGATCGTGCAACAACCTTTTAAAAGGATACCTAGATTCTGGAAAACAAGTTCAGGCAGA 1739
|||||| ||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||
Sbjct 1698 TAGATCCTGCAACAGCCTTTTAAAGGGATACCTAGATTGTGGAAAACAAGTGCAGGCAGA 1757
Query 1740 GAGAATATATGATCTGATGAGATTGAAGAAATACGAAATCGAACCACCGCTTATGGAAAA 1799
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1758 GAGAATATATGATCTGATGAGAATGAAGAAATACGAAATCGAACCACCGCTTATGGAAAA 1817
Query 1800 GCTTGATTACATCCTGAGCTTGAAGAAAAAAGAGCTGAAGAA-A--CCGTTAAGCATGAA 1856
|||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||
Sbjct 1818 GCTTGATTACATCCTGAGCTTGAAGAAAAAAGAGGTGAAGAAGAGACCGTTTAGCATGAA 1877
Query 1857 GCTAAGCAAAGACCAGCGTGAGGTATTGGTAGGTTTGCTGTTAGGTGGCTTGCAAATCGA 1916
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1878 GCTAAGCAAAGACCAGCGTGAGGTATTGGTAGGTTTGTTGTTAGGTGGCTTGCAAATCGA 1937
Query 1917 ATCTGACAAAGAGAAGAAGAGCCACATGATCAAATTTGAATTCAGAGAGAATTCTCAGAC 1976
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1938 ATCAGACAAAGAGAAGAAGAGCCACATGATCAAATTTGAATTTAGAGAAAATTCTCA-AG 1996
Query 1977 C-CATCTGATTCTTAAACAACACATACATGACCAGTTCCGCGAGTGGTTTCATCCTTTAA 2035
| |||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||| |
Sbjct 1997 CTCATCTGGTTCTTAAACAAAACATACATGACCAGTTCCGTGAGTGGTTGCATCCTTTGA 2056
Query 2036 GCGATTTTCAGGAGGATATAATACCGTTCGAATTCTACTCCGTTCCCCATTCATACTTCG 2095
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 GCAATTTTCAGGAGGATATTATACCGTTCGAATTCTACTCCGTTCCCCATTCATACTTCG 2116
Query 2096 GGTTTTACGCTGAACATTTCTGGCCCAAGGGTCAACCAGAGATTCCAAACCTGATCCATC 2155
|||||||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||||
Sbjct 2117 GGTTTTACGCTGAACATTACTGGCCAAAGGGTCAGCCAGAGATTCCAAAACTGATTCATC 2176
Query 2156 GGTGGCTCTCACCACACTCACTCGCATATTGGTACATGTACAGCGGCTTTAAAACATCAT 2215
||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2177 GGTGGCTATCGCCACACTCACTCGCGTATTGGTACATGTACAGCGGCGTTAAAACATCAT 2236
Query 2216 CAGGAGACATTATCTTGAGATTGAAGGGAAGTCTAGAAGGTGTTGAGAAGGTAGTAAAGG 2275
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2237 CAGGAGACATTATCTTGAGATTGAAGGGAAGTCTCGAAGGTGTTGAGAAAGTAGTAAAGG 2296
Query 2276 CTCTT-AGAGCCAAATCAATGGAATGTCGAGTTAAGAAGAAAGGAAAAGTCTTCTGGATC 2334
||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 CTCTTCA-AGCCAAATCTATGGAATGTCGAGTTAAGAAGAAAGGAAAAGTCTTCTGGATT 2355
Query 2335 GGACTTCAGGGAACAAACTCAGCTTTGTTCTGGAACCTAATAGAGCCTTACGTGTTAGAG 2394
||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 2356 GGACTTCAGGGAACAAACTCAGCTTTGTTCTGGAAACTAATAGAGCCTCATGTGTTAGAG 2415
Query 2395 GACTTGAAAGATCATTTGAAACCTCCTTCTGAATCAATGGGCAATG 2440
|||||||||| |||||||||||| ||||||||||| ||| |||||
Sbjct 2416 AACTTGAAAGAGCATTTGAAACCTGCTTCTGAATCACTGGACAATG 2461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125367190557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5