BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg343220
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19830.1 | Symbols: SNF7.2, VPS32 | SNF7 family protein | ch... 911 0.0
AT4G29160.1 | Symbols: SNF7.1 | SNF7 family protein | chr4:1438... 508 2e-143
> AT2G19830.1 | Symbols: SNF7.2, VPS32 | SNF7 family protein |
chr2:8557729-8559741 REVERSE LENGTH=1071
Length=1071
Score = 911 bits (493), Expect = 0.0
Identities = 539/561 (96%), Gaps = 3/561 (1%)
Strand=Plus/Plus
Query 1 ATGCTAGAGAAGAAGGAGAATGTTCTTCTCAAGAAAGCTGCTGGAGAGGTTGAGAAAGCT 60
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 ATGTTAGAGAAGAAGGAGAATGTTCTTCTCAAGAAAGCTACTGGAGAGGTTGAGAAAGCT 296
Query 61 AAGGAATTCTCCCGGGTGAAGAACAAACGAGCGGCTATACAATGTTTGAAAAGGAAGAGG 120
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 297 AAGGAATTCTCCCGGGCGAAGAACAAACGCGCGGCTATACAATGTTTGAAAAGGAAAAGG 356
Query 121 TTATATGAGCAACAAGTTGAACAGCTTGGGAATTTCCAGCTCCGTATTCATGATCAGATG 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 357 TTATATGAGCAACAAGTTGAACAGCTCGGGAATTTCCAGCTCCGTATTCATGATCAAATG 416
Query 181 ATTATGTTAGAAGGTGCGAAAGCAACAACAGAGACTGTAGATGCTTTGAGGACTGGAGCT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATTATGTTAGAAGGTGCTAAAGCAACAACAGAGACTGTAGATGCTTTGAGGACTGGAGCT 476
Query 241 TCTGCAATGAAAGCTATGCAGAAAGCAACAAACATTGATGATGTTGACAAGACAATGGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCTGCAATGAAAGCTATGCAGAAAGCAACAAACATTGATGATGTTGACAAGACAATGGAT 536
Query 301 GAGATCAACGAGCAAACTGAGAACATGAAACAGATCCAAGAAGCATTGTCGGCTCCATTT 360
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAGATCAATGAACAAACTGAGAACATGAAACAGATCCAAGAAGCATTGTCGGCTCCATTT 596
Query 361 GGAACAGCTGCTGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAACTAGAAGGC 420
|| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 597 GGG---GCTAATGATTTTGATGAGGATGAATTGGAAGCAGAACTTGACGAACTAGAAGGC 653
Query 421 GCCGAGCTAGAAGAGCAACTTCTTCAGCCTGTTCCAATCCATGTGCCTCAAGGAAACAAA 480
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GCTGAGCTAGAAGAGCAACTTCTTCAGCCTGTTCCAATCCATGTGCCTCAAGGAAACAAG 713
Query 481 CCTAATCGTGCTCCAGCTCAAAAGCAACCTACTGCTGAGGAAGATGAACTCGCTGCCTTA 540
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 714 CCTGCTCGTGCTCCAGCTCAGAAGCAACCTACTGCTGAGGAAGATGAACTCGCTGCCTTA 773
Query 541 CAAGCTGAGATGGCTCTCTAA 561
|||||||||||||||||||||
Sbjct 774 CAAGCTGAGATGGCTCTCTAA 794
> AT4G29160.1 | Symbols: SNF7.1 | SNF7 family protein | chr4:14380753-14382666
FORWARD LENGTH=1062
Length=1062
Score = 508 bits (275), Expect = 2e-143
Identities = 394/452 (87%), Gaps = 6/452 (1%)
Strand=Plus/Plus
Query 1 ATGCTAGAGAAGAAGGAGAATGTTCTTC-TCAAGAAAGCTGCTGGAGAGGTTGAGAAAGC 59
||||||||||| |||||||| || | || | |||||||||| || |||||||||||| ||
Sbjct 259 ATGCTAGAGAAAAAGGAGAAAGTAC-TCTTGAAGAAAGCTGGTGCAGAGGTTGAGAAGGC 317
Query 60 TAAGGAATTCTCCCGGG-TGAAGAACAAACGAGCGGCTATACAATGTTTGAAAAGGAAGA 118
|| |||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 318 AAAAGAATACTCCCGGGCT-AAGAACAAACGAGCGGCTATACAGTGTTTGAAAAGGAAGA 376
Query 119 GGTTATATGAGCAACAAGTTGAACAGCTTGGGAATTTCCAGCTCCGTATTCATGATCAGA 178
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 377 GGTTATATGAGGGACAAGTCGAACAGCTTGGGAATTTCCAGCTCCGTATTCATGATCAAA 436
Query 179 TGATTATGTTAGAAGGTGCGAAAGCAACAACAGAGACTGTAGATGCTTTGAGGACTGGAG 238
||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||| |||||
Sbjct 437 TGATTATGTTAGAAGGTGCAAAAGCAACAACCGAAACTGTTGATGCATTGAGGAGTGGAG 496
Query 239 CTTCTGCAATGAAAGCTATGCAGAAAGCAACAAACATTGATGATGTTGACAAGACAATGG 298
||||||||||||| || ||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 497 CTTCTGCAATGAAGGCAATGCAGAAAGCAACAAATATTGATGATGTGGATAAGACCATGG 556
Query 299 ATGAGATCAACGAGCAAACTGAGAACATGAAACAGATCCAAGAAGCATTGTCGGCTCCAT 358
| |||||||| |||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 557 ACGAGATCAATGAGCAAACCGAGAACATGAAACAGATCCAAGAAGCATTGGCGACTCCAA 616
Query 359 TTGGAACAGCTGCTGATTTTGATGAGGATGAA-TTGGAAGCAGAACTTGAAGAACTAGAA 417
| || |||| ||||| || || |||||||| ||| | ||||| ||||| |||||||||
Sbjct 617 TGGGGGCAGCGGCTGACTTCGACGAGGATGAGCTTGCA-GCAGAGCTTGATGAACTAGAA 675
Query 418 GGCGCCGAGCTAGAAGAGCAACTTCTTCAGCC 449
| | ||||| ||| ||||||||| |||||
Sbjct 676 AGTGAAGAGCTTGAATCGCAACTTCTACAGCC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5